genome.fa.s282.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold282
Parameters: 2 7 7 80 10 50 1000
Length:  1446459

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315312--315612	164	1.8	162	88	5	455	36	11	11	40	1.79
320208--320339	66	2.0	66	93	0	228	34	25	9	30	1.88
327346--327487	54	2.6	55	92	1	223	42	12	23	21	1.87
327336--327514	55	3.3	55	81	1	164	46	11	21	20	1.81
328839--329057	43	5.2	43	70	4	131	21	29	15	33	1.94
328839--329612	85	9.2	84	72	7	336	19	28	16	35	1.94
328839--329459	169	3.7	169	77	5	569	19	28	16	35	1.93
329287--329572	126	2.3	128	78	4	321	19	28	16	34	1.94
328855--329467	42	14.5	42	72	4	279	18	28	16	35	1.93
328855--329612	42	18.0	41	69	8	216	19	28	16	35	1.94
329555--329724	85	2.0	82	81	3	196	15	24	21	38	1.92
330682--331338	168	3.9	167	82	5	677	26	11	8	53	1.66
330692--331338	336	1.9	334	81	3	762	26	11	8	52	1.66
331987--332028	14	3.1	14	86	6	68	76	0	23	0	0.79
331991--332031	12	3.3	12	90	6	64	78	0	21	0	0.76
332005--332047	23	2.0	23	86	9	63	74	0	20	4	1.00
331987--332048	25	2.5	25	81	5	72	75	0	20	3	0.94
332820--333495	292	2.3	290	87	3	968	34	12	13	39	1.82
332972--333215	128	1.9	128	93	0	416	30	12	16	40	1.86
333100--333398	161	1.8	163	85	4	426	36	11	12	39	1.79
333262--333495	129	1.8	127	80	4	281	34	11	12	41	1.79
334477--334545	1	69.0	1	73	0	57	0	1	11	86	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334480--334545	5	13.8	5	81	15	77	0	1	12	86	0.64
334477--334545	14	4.9	14	87	8	95	0	1	11	86	0.62
334480--334545	19	3.5	19	85	6	89	0	1	12	86	0.64
340658--340739	36	2.3	36	85	8	114	14	19	14	51	1.77
340744--340877	42	3.4	40	71	17	127	23	26	12	38	1.90
340733--340877	77	1.9	77	91	0	236	21	26	11	40	1.87
341239--341344	31	3.4	31	66	7	81	27	28	25	18	1.98
341007--341290	118	2.4	118	85	3	419	30	24	22	21	1.99
340945--341535	298	2.0	298	85	4	807	30	24	23	21	1.99
342050--342116	35	1.9	35	85	11	93	38	14	13	32	1.86
342146--342197	20	2.6	20	84	0	59	38	15	13	32	1.86
346271--346993	61	11.8	60	77	8	467	23	24	11	40	1.88
346226--346460	121	2.0	120	84	2	310	26	23	10	39	1.87
346304--346516	30	7.0	30	70	12	139	25	25	10	38	1.88
346271--346533	30	8.7	30	68	10	124	24	23	11	39	1.89
346599--346712	30	3.8	30	77	6	122	24	22	12	40	1.88
346599--347002	30	13.4	30	67	7	111	23	23	11	41	1.87
346536--346986	121	3.7	120	76	5	381	23	23	11	40	1.88
346551--347052	61	8.3	60	82	2	425	23	23	11	41	1.87
347904--348619	61	11.7	60	77	9	552	23	24	11	40	1.87
347961--348596	30	20.7	30	66	14	179	24	25	10	40	1.87
348195--348596	182	2.2	181	82	4	443	23	24	10	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348195--348613	121	3.5	119	85	3	500	24	24	10	40	1.87
348195--348619	60	7.0	60	80	6	437	24	24	10	40	1.87
349525--349998	158	2.9	164	81	7	577	31	11	9	47	1.72
352050--352588	155	3.5	155	85	1	670	25	16	19	38	1.92
353847--353871	13	1.9	13	100	0	50	36	16	16	32	1.90
353939--353964	13	2.0	13	100	0	52	30	15	15	38	1.88
353919--353987	33	2.1	33	86	5	95	33	14	17	34	1.90
357157--357224	33	2.1	33	89	8	104	35	17	14	32	1.91
365200--365284	43	2.0	43	92	0	143	34	1	24	40	1.63
365865--365889	13	1.9	13	100	0	50	32	16	16	36	1.90
365844--365906	33	1.9	32	87	3	90	33	20	15	30	1.94
365980--366041	13	4.8	13	75	18	67	38	16	11	33	1.84
369936--369968	5	6.6	5	92	0	57	15	0	3	81	0.80
372528--372567	22	1.9	21	90	10	64	35	10	12	42	1.76
374180--374224	20	2.2	20	88	8	63	40	20	4	35	1.72
379968--380022	20	2.8	20	83	5	67	41	12	14	30	1.83
385787--385886	20	5.7	20	65	31	68	35	17	16	32	1.91
385796--385885	33	2.7	33	94	0	153	34	17	15	32	1.92
385915--385967	19	2.7	20	85	2	72	35	16	15	32	1.90
390886--390937	25	2.0	27	81	7	63	25	0	5	69	1.10
391544--391586	19	2.3	19	83	0	50	62	2	13	20	1.42
391237--391813	165	3.5	164	79	7	569	48	8	11	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392643--393264	42	14.7	43	70	9	264	45	13	22	18	1.84
392620--393281	170	3.9	169	82	5	759	45	13	23	18	1.84
392643--393295	85	7.7	84	82	5	667	45	13	22	18	1.85
393299--393699	41	9.9	40	72	7	238	44	15	21	17	1.86
393281--393783	81	6.2	81	80	4	471	45	16	20	17	1.85
393281--393783	162	3.1	161	83	1	560	45	16	20	17	1.85
393281--393652	40	9.2	39	74	8	221	44	16	21	17	1.87
393820--394002	44	4.2	44	85	1	215	42	16	22	18	1.89
394441--394637	92	2.1	92	91	0	313	30	13	27	28	1.94
395122--395274	69	2.2	69	86	1	225	27	17	15	39	1.89
395172--395225	20	2.7	20	82	0	72	27	18	14	38	1.90
397633--397748	51	2.3	51	76	7	128	32	25	9	32	1.88
397764--397982	79	2.8	79	81	6	239	27	24	14	33	1.94
397843--398089	79	3.1	78	80	6	232	29	23	12	34	1.91
409949--409989	11	3.5	11	87	9	55	87	7	2	2	0.70
409949--409990	18	2.3	19	88	12	61	88	7	2	2	0.69
410960--411148	94	1.9	97	84	12	255	26	30	15	27	1.96
411096--411519	60	7.0	61	81	6	492	25	26	18	29	1.98
411096--411519	121	3.5	121	84	5	535	25	26	18	29	1.98
411491--411719	42	5.5	41	71	12	148	19	27	14	38	1.90
411489--411741	83	3.0	81	76	9	222	18	28	13	40	1.87
415089--415153	21	3.6	19	69	26	61	46	15	10	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415089--415153	34	2.0	33	90	6	105	46	15	10	27	1.79
417353--417402	21	2.3	21	80	10	57	56	4	18	22	1.58
419195--419225	15	2.1	15	93	0	53	48	16	22	12	1.80
421307--421344	13	2.9	13	96	0	67	34	18	15	31	1.92
421456--421501	21	2.2	20	81	11	58	32	19	4	43	1.71
423867--423963	13	5.6	19	71	28	92	44	15	12	27	1.82
423867--423963	32	3.0	32	96	3	176	44	15	12	27	1.82
427912--428026	51	2.3	51	84	0	158	33	26	7	31	1.85
428014--428084	28	2.6	25	82	17	72	23	30	16	28	1.97
428068--428187	51	2.4	51	81	2	134	24	25	15	34	1.95
427879--428213	158	2.1	157	81	4	370	27	26	13	31	1.94
428166--428345	78	2.3	78	83	5	238	28	25	13	32	1.94
428206--428362	78	2.0	77	81	7	183	29	25	10	34	1.89
428337--428456	62	1.9	62	91	0	195	26	25	15	33	1.95
433376--433418	3	14.3	3	95	0	77	34	0	34	30	1.58
435479--435620	51	2.8	51	89	2	205	27	19	11	41	1.86
449479--449550	25	2.9	23	77	20	74	79	12	5	2	1.02
450771--451267	28	17.5	28	84	5	615	29	30	16	23	1.96
450771--451267	113	4.4	114	87	3	648	29	30	16	23	1.96
455253--455307	20	2.8	19	86	8	74	32	16	14	36	1.89
455202--455357	71	2.2	71	88	2	224	26	19	13	40	1.88
465208--465257	21	2.4	22	83	9	61	32	20	0	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466024--466049	13	2.0	13	100	0	52	30	15	15	38	1.88
466747--466790	21	2.1	21	83	8	54	25	31	4	38	1.76
468596--468621	13	2.0	13	100	0	52	38	15	15	30	1.88
470699--470729	15	2.1	15	93	0	53	12	22	16	48	1.80
472534--472578	21	2.1	21	84	8	56	22	20	4	53	1.63
474805--474830	13	2.0	13	100	0	52	30	15	15	38	1.88
474869--474941	20	3.6	20	81	9	76	30	16	13	39	1.87
474889--474944	20	2.8	20	89	5	78	30	16	14	39	1.88
476944--476984	22	1.9	22	90	5	66	43	2	17	36	1.62
477376--477423	21	2.2	22	82	10	55	31	6	14	47	1.69

Tables:   1   2   3   4   5   6   7   8   9   10