genome.fa.s282.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold282
Parameters: 2 7 7 80 10 50 1000
Length:  1446459

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  7  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
938011--938067	21	2.7	21	97	0	105	33	10	19	36	1.86
938123--938190	19	3.9	19	78	21	85	35	11	14	38	1.83
938144--938168	13	1.9	13	100	0	50	36	16	16	32	1.90
938125--938187	32	2.0	32	96	0	117	34	12	15	36	1.86
938230--938255	13	2.0	13	100	0	52	30	15	15	38	1.88
938210--938276	33	2.0	33	88	0	98	25	14	16	43	1.86
940731--940803	27	2.7	27	87	6	94	23	34	21	20	1.97
940786--940956	51	3.3	51	79	4	198	29	26	11	32	1.92
940939--941020	28	2.9	28	82	7	96	24	31	17	26	1.97
940622--941049	212	2.0	211	82	4	524	28	27	12	31	1.93
947340--947379	13	3.0	13	81	3	53	55	2	0	42	1.13
948333--948371	20	2.0	20	84	0	51	17	25	7	48	1.74
948741--948776	16	2.2	17	90	5	56	72	0	0	27	0.85
948744--948802	26	2.3	25	85	8	75	66	0	1	32	1.02
948814--948846	17	2.0	16	94	5	57	57	0	0	42	0.98
949049--949110	20	3.1	20	79	9	56	48	1	1	48	1.21
949207--949231	13	1.9	13	100	0	50	88	4	8	0	0.64
949805--949842	14	2.8	13	88	7	58	76	2	0	21	0.91
950070--950127	30	1.9	30	96	0	107	34	8	10	46	1.69
950400--950454	9	5.5	10	81	14	60	29	0	1	69	0.99
950419--950457	12	3.5	11	83	10	53	28	0	2	69	1.02
950743--950781	18	2.1	19	85	4	53	25	0	5	69	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951266--951299	14	2.4	14	90	9	52	14	5	8	70	1.31
953661--953724	33	1.9	33	84	12	87	34	17	14	34	1.89
953754--953806	20	2.7	20	85	2	63	37	20	13	28	1.90
954350--954424	20	3.8	19	80	3	78	33	12	13	41	1.81
954350--954427	40	2.0	39	85	7	104	33	11	14	41	1.81
958329--958380	19	2.8	19	77	13	63	75	7	1	15	1.12
959380--959597	34	6.4	34	84	2	269	24	7	26	41	1.81
959380--959597	102	2.1	101	89	3	330	24	7	26	41	1.81
964003--964221	34	6.5	34	86	2	289	25	7	26	40	1.82
964003--964221	102	2.2	101	90	1	348	25	7	26	40	1.82
965453--965486	12	2.9	12	91	4	52	35	0	0	64	0.94
965471--965539	18	3.7	19	71	23	58	44	0	0	55	0.99
965459--965512	17	3.3	17	75	14	60	42	0	0	57	0.98
965474--965533	27	2.2	28	84	3	77	45	0	0	55	0.99
965502--965549	16	2.9	18	74	22	52	47	0	0	52	1.00
965886--965930	22	2.0	22	82	4	54	46	4	0	48	1.22
965984--966052	33	2.0	35	83	10	90	40	5	0	53	1.25
966235--966286	21	2.5	21	81	12	63	51	0	0	48	1.00
966258--966318	16	3.8	17	78	10	58	57	0	0	42	0.98
966783--966879	37	2.6	37	75	19	94	49	1	0	49	1.07
966895--966981	16	4.9	17	69	25	56	65	1	1	32	1.07
966909--966957	23	2.2	23	82	7	57	73	2	2	22	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
967230--967279	21	2.4	20	83	6	55	58	2	0	40	1.10
968730--968790	24	2.5	24	81	10	70	32	3	0	63	1.10
969470--969508	2	19.5	2	100	0	78	48	0	0	51	1.00
971192--971236	22	2.0	24	86	8	67	37	4	2	55	1.32
971870--971998	69	1.9	69	83	6	172	37	2	4	55	1.33
975402--975436	16	2.2	16	94	0	61	34	22	11	31	1.90
979522--980057	78	6.8	79	84	6	589	32	12	26	29	1.92
979549--980067	157	3.3	157	84	4	683	31	11	26	29	1.92
979543--980067	235	2.2	235	85	5	704	31	12	26	29	1.92
982503--982542	20	2.0	20	100	0	80	45	15	15	25	1.84
983949--984194	126	2.0	127	89	3	381	39	13	18	29	1.88
983953--984172	63	3.5	61	69	13	169	39	14	16	30	1.88
984808--984856	21	2.3	21	75	6	55	59	2	4	34	1.28
985670--985751	41	2.0	41	85	0	110	32	28	9	29	1.89
990196--990278	42	2.0	42	97	0	157	28	12	13	45	1.79
993579--993652	21	3.6	21	81	7	71	37	12	20	29	1.89
995990--996328	103	3.4	101	77	10	354	31	20	9	38	1.84
995987--996425	199	2.2	199	87	4	634	30	21	10	36	1.87
996093--996435	97	3.5	97	78	8	352	30	23	9	37	1.86
997865--997904	22	2.0	20	85	14	55	45	7	5	42	1.54
997987--998049	32	1.9	32	87	3	90	30	14	14	41	1.85
998118--998167	14	3.9	14	72	20	54	30	24	6	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998115--998167	24	2.2	24	89	0	79	28	24	5	41	1.77
1000314--1000408	20	4.8	20	88	2	120	30	14	14	40	1.87
1000424--1000454	16	1.9	16	100	0	62	38	12	12	35	1.82
1010586--1010656	32	2.2	32	94	0	124	30	12	19	36	1.89
1010605--1010629	13	1.9	13	100	0	50	36	16	16	32	1.90
1010584--1010648	19	3.7	19	73	23	70	30	12	18	38	1.88
1010701--1010725	13	1.9	13	100	0	50	32	16	16	36	1.90
1010734--1010862	52	2.5	52	96	0	240	34	17	18	28	1.94
1014811--1015523	60	11.9	60	87	5	953	25	27	19	26	1.99
1014813--1015523	117	5.9	118	84	7	850	26	27	19	26	1.99
1014811--1015519	302	2.4	299	88	3	1047	25	27	19	26	1.99
1015446--1015679	105	2.2	104	90	3	362	24	29	16	29	1.97
1015611--1016025	45	9.4	45	76	9	342	19	26	13	40	1.89
1015611--1016018	88	4.6	89	75	11	238	19	26	12	41	1.88
1015612--1015977	134	2.8	133	86	2	459	20	26	12	40	1.88
1016028--1016130	41	2.5	41	78	7	111	16	29	11	42	1.83
1016768--1016797	13	2.3	13	94	0	51	33	16	13	36	1.88
1016718--1016842	62	2.0	63	89	4	191	28	16	16	37	1.91
1018008--1018178	78	2.2	79	84	1	218	27	27	14	30	1.95
1018133--1018235	28	3.7	28	88	5	147	24	29	18	28	1.98
1018189--1018363	79	2.2	79	88	2	253	27	25	15	31	1.96
1018055--1018313	135	1.9	134	83	6	337	25	27	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1018299--1018412	51	2.3	50	90	1	174	32	25	11	30	1.91
1018007--1018568	213	2.7	208	82	7	561	27	26	14	31	1.95
1018392--1018614	80	2.8	79	82	5	270	26	28	16	29	1.97
1018349--1018657	79	3.9	79	76	7	277	26	27	14	30	1.95
1020142--1020301	86	1.9	86	82	5	207	31	20	11	36	1.88
1020242--1020405	90	1.8	91	86	5	244	32	18	8	39	1.81
1020438--1020605	94	1.8	94	86	7	247	30	23	9	36	1.87
1020405--1020633	94	2.5	88	76	14	232	27	24	12	35	1.91
1023080--1023118	21	1.9	20	85	15	53	41	0	7	51	1.31
1025230--1025383	78	2.0	77	82	3	184	22	11	18	47	1.81
1025453--1025794	154	2.2	153	85	2	445	25	15	19	39	1.91
1025453--1025837	154	2.5	154	81	5	417	23	15	19	41	1.89
1025453--1025894	154	2.9	154	78	7	377	24	14	19	40	1.89
1030741--1031077	79	4.2	79	78	2	332	31	15	26	26	1.96
1033624--1033672	19	2.5	20	93	3	82	30	16	12	40	1.85
1033710--1033765	21	2.7	21	100	0	112	35	17	10	35	1.85
1034459--1034702	61	4.0	60	82	6	278	27	20	27	23	1.99
1034582--1035078	135	3.8	135	82	8	558	28	19	27	24	1.99
1034851--1035104	61	4.4	58	81	6	254	26	21	25	26	1.99
1034829--1035368	270	2.0	269	87	2	780	26	20	27	24	1.99
1035107--1035423	55	5.5	60	84	5	353	23	21	29	25	1.99
1035121--1035752	110	5.7	112	68	15	339	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1034912--1036769	325	5.9	320	80	11	1799	24	20	29	24	1.99
1035443--1036344	55	16.5	55	69	13	429	24	21	29	24	1.99
1034829--1036493	590	2.8	586	89	4	2387	25	21	29	24	1.99
1035880--1035965	26	3.2	26	64	15	66	23	20	30	25	1.99
1036358--1036489	55	2.4	56	94	3	241	18	22	30	28	1.98
1036212--1036528	149	2.1	150	97	1	602	22	20	31	26	1.98
1036468--1036567	39	2.6	39	100	0	200	25	18	34	23	1.96
1036546--1036681	55	2.5	55	90	3	213	21	21	29	27	1.98
1036319--1036716	188	2.1	188	97	0	742	24	19	31	25	1.98
1039831--1040012	81	2.2	81	84	1	231	34	10	27	26	1.90

Tables:   1   2   3   4   5   6   7   8   9   10