genome.fa.s295.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold295
Parameters: 2 7 7 80 10 50 1000
Length:  1524207

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1350944--1351017	5	13.0	6	74	20	54	68	0	0	31	0.89
1351042--1351069	9	3.1	9	100	0	56	21	0	0	78	0.75
1355019--1355178	83	1.9	83	87	7	236	38	10	13	38	1.78
1364837--1364878	21	2.0	21	100	0	84	28	14	28	28	1.95
1364839--1364885	21	2.2	21	92	0	76	31	14	27	25	1.95
1370792--1370930	69	2.0	69	91	2	226	51	13	17	17	1.77
1375920--1376067	78	1.9	78	84	0	197	26	20	13	39	1.89
1382593--1382641	18	2.6	19	87	6	73	42	0	2	55	1.11
1382601--1382648	18	2.7	18	96	0	87	43	0	0	56	0.99
1385043--1385112	33	2.1	33	87	10	99	35	17	14	32	1.90
1385066--1385095	13	2.3	13	100	0	60	36	13	16	33	1.88
1385141--1385195	19	2.8	20	88	5	85	38	18	14	29	1.90
1385181--1385207	13	2.1	13	100	0	54	40	14	14	29	1.86
1392195--1392229	15	2.3	15	90	9	54	28	25	0	45	1.54
1393103--1393128	13	2.0	13	100	0	52	30	15	15	38	1.88
1395677--1395715	13	3.0	13	100	0	78	38	15	15	30	1.88
1397794--1397824	15	2.1	15	93	0	53	12	22	16	48	1.80
1399628--1399672	21	2.1	21	84	8	56	22	20	4	53	1.63
1401890--1401915	13	2.0	13	100	0	52	30	15	15	38	1.88
1403861--1403915	19	2.8	20	83	5	76	36	16	14	32	1.89
1404662--1404699	19	1.9	19	89	5	58	28	5	10	55	1.56
1408508--1408534	13	2.1	13	100	0	54	29	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1410942--1410968	13	2.1	13	100	0	54	29	14	14	40	1.86
1410954--1411009	19	2.9	19	84	5	67	32	12	16	39	1.85
1413647--1413686	18	2.2	18	100	0	80	32	10	5	52	1.56
1414538--1414573	19	1.9	18	88	5	54	50	0	2	47	1.15
1419463--1419501	5	8.0	5	83	16	55	43	0	0	56	0.99
1419465--1419501	19	1.9	19	89	10	58	43	0	0	56	0.99
1423966--1424024	32	1.9	31	83	13	77	59	8	10	22	1.56
1424303--1424328	13	2.0	13	100	0	52	30	15	15	38	1.88
1424283--1424346	32	2.0	33	90	3	103	28	14	18	39	1.90
1424283--1424353	19	4.0	18	72	25	62	26	12	21	39	1.89
1426867--1426930	13	4.9	13	94	0	110	31	15	18	34	1.93
1426867--1426930	26	2.5	26	100	0	128	31	15	18	34	1.93
1429013--1429044	15	2.1	15	94	0	55	15	21	15	46	1.83
1430845--1430892	21	2.3	21	79	10	55	20	20	4	54	1.61
1433097--1433161	32	2.0	33	87	3	96	27	13	16	41	1.87
1435386--1435416	2	15.5	2	100	0	62	48	0	0	51	1.00
1437943--1437996	20	2.7	20	80	8	65	38	16	14	29	1.89
1437984--1438120	53	2.6	53	96	0	247	36	18	16	28	1.93
1438712--1438778	37	1.9	35	88	11	102	32	11	25	29	1.92
1439478--1439515	6	6.3	6	84	9	51	65	2	2	28	1.19
1441108--1441171	32	2.0	32	87	0	92	42	10	31	15	1.82
1443997--1444051	26	2.3	23	87	12	83	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1444592--1444645	20	2.7	20	91	0	90	29	16	11	42	1.83
1448285--1448347	26	2.5	26	82	12	78	52	4	0	42	1.22
1448427--1448451	13	1.9	13	100	0	50	52	0	0	48	1.00
1448945--1449021	25	3.2	22	63	19	55	55	1	6	36	1.34
1448941--1449037	50	1.9	50	100	0	194	54	2	6	37	1.37
1448962--1449037	22	3.2	22	66	20	62	55	2	6	35	1.40
1452065--1452117	14	3.7	14	80	5	61	58	0	0	41	0.98
1452045--1452132	29	3.0	29	73	6	81	54	0	0	45	0.99
1452436--1452474	3	13.0	3	100	0	78	33	0	0	66	0.92
1453289--1453335	16	3.0	16	90	3	78	44	0	0	55	0.99
1453307--1453362	21	2.7	20	86	8	85	44	0	0	55	0.99
1453286--1453424	15	8.8	16	70	20	64	46	0	0	52	1.11
1453292--1453423	21	6.3	20	72	20	76	46	0	0	51	1.11
1455248--1455286	20	2.0	20	84	0	51	51	2	0	46	1.14
1456525--1456579	14	3.9	14	73	4	56	25	20	21	32	1.97
1456526--1456693	88	1.9	88	81	4	205	28	19	19	32	1.96
1457560--1457609	25	2.0	25	100	0	100	60	12	20	8	1.57
1461241--1461376	48	2.8	48	89	2	184	28	15	26	29	1.96
1461249--1461405	72	2.2	72	79	2	172	27	14	27	30	1.95
1461241--1461381	24	5.9	24	77	3	131	28	15	26	29	1.96
1461359--1461415	24	2.4	24	78	0	60	28	12	28	31	1.93
1464235--1464306	32	2.2	33	82	2	83	34	19	16	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1465156--1465208	20	2.6	20	90	3	79	41	11	16	30	1.84
1465156--1465226	21	3.4	21	84	7	83	38	9	18	33	1.84
1469219--1469281	29	2.2	29	82	5	74	23	23	22	30	1.99
1469239--1469297	15	4.0	15	80	4	57	25	20	20	33	1.97
1469273--1469306	15	2.3	15	94	0	59	26	11	17	44	1.83
1469381--1469436	29	1.9	29	82	7	69	33	19	12	33	1.89
1482270--1482309	3	13.3	3	94	0	71	30	32	0	37	1.58
1483949--1484010	33	1.9	32	87	9	90	38	12	17	30	1.88
1488111--1488167	20	2.8	21	75	2	62	42	10	15	31	1.81
1488248--1488298	20	2.5	21	90	3	77	35	17	7	39	1.79
1491906--1491995	44	2.0	44	100	0	180	38	13	32	15	1.86
1496833--1496872	11	3.5	11	83	6	53	5	17	0	77	0.94
1496833--1496881	23	2.3	22	86	10	66	6	14	0	79	0.91
1497017--1497052	2	18.0	2	100	0	72	50	0	0	50	1.00
1500144--1500169	13	2.0	13	100	0	52	38	15	15	30	1.88
1500126--1500189	32	2.0	33	90	3	103	39	18	14	28	1.90
1505198--1505223	13	2.0	13	100	0	52	38	15	15	30	1.88
1505180--1505243	32	2.0	33	90	3	103	39	18	14	28	1.90
1508793--1508911	42	2.8	42	89	0	184	9	46	2	42	1.49
1508817--1508902	24	3.8	24	69	17	76	11	45	2	40	1.53
1508821--1508887	21	3.2	21	69	23	68	11	44	2	40	1.56
1511253--1511278	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1511230--1511296	32	2.1	33	91	2	109	28	14	14	41	1.86
1513848--1513877	13	2.3	13	94	0	51	30	16	20	33	1.94
1517798--1517845	21	2.3	22	85	10	73	25	18	4	52	1.63
1519352--1519390	19	2.1	19	95	0	69	30	10	15	43	1.80
1519441--1519478	19	2.1	19	85	5	51	34	15	13	36	1.87
1519411--1519478	33	2.1	33	88	5	102	29	14	14	41	1.86

Tables:   1   2   3   4   5   6   7   8   9   10

The End!