genome.fa.s295.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold295
Parameters: 2 7 7 80 10 50 1000
Length:  1524207

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273999--274427	152	2.8	151	85	4	510	32	9	9	48	1.67
276183--276220	18	2.1	18	90	0	58	31	18	2	47	1.62
277710--277768	19	3.1	19	82	2	73	37	11	15	35	1.84
277714--277768	20	2.8	19	83	2	65	36	10	16	36	1.84
277816--277840	13	1.9	13	100	0	50	36	16	16	32	1.90
277796--277860	33	2.0	33	90	6	105	36	15	16	30	1.90
283728--283754	13	2.1	13	100	0	54	29	14	14	40	1.86
283739--283795	19	2.9	19	82	5	69	31	14	17	36	1.89
283735--283800	20	3.4	19	77	8	71	33	12	18	36	1.88
283846--283891	13	4.0	13	69	30	50	32	13	17	36	1.88
283823--283891	33	2.1	33	86	5	95	33	13	17	36	1.88
289188--289230	21	2.1	21	83	12	54	53	6	11	27	1.63
293134--293173	13	3.1	13	92	0	71	35	15	10	40	1.80
295040--295081	22	1.9	22	95	0	75	38	4	35	21	1.75
295672--295698	13	2.1	13	100	0	54	29	14	14	40	1.86
295653--295716	32	2.0	32	87	9	94	28	15	15	40	1.88
295682--295738	19	2.9	19	84	2	78	31	17	17	33	1.93
295768--295836	33	2.1	33	86	5	95	30	13	20	36	1.90
299426--299494	33	2.1	33	83	0	84	23	17	21	37	1.94
300255--300304	21	2.3	22	80	10	59	28	8	16	48	1.74
300548--300572	13	1.9	13	100	0	50	36	16	16	32	1.90
302891--303334	222	2.0	222	99	0	879	38	12	11	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305823--305874	20	2.6	20	87	0	68	30	23	7	38	1.83
308207--308900	79	8.8	78	81	5	639	29	24	12	33	1.93
308198--308900	158	4.4	158	81	5	713	29	24	12	33	1.92
308198--308900	237	3.0	236	82	5	828	29	24	12	33	1.92
308771--309030	130	2.0	130	84	4	346	28	26	12	33	1.92
308891--309063	79	2.2	79	88	6	253	25	27	16	30	1.96
310401--310474	20	3.7	20	80	3	87	33	12	13	40	1.82
316112--316164	13	4.5	13	69	26	55	35	16	13	33	1.88
316115--316179	33	2.0	33	90	6	105	33	18	13	33	1.90
316209--316264	19	2.9	19	91	2	85	35	19	16	28	1.93
316249--316275	13	2.1	13	100	0	54	40	14	14	29	1.86
318622--318665	22	2.0	23	82	13	56	50	0	20	29	1.49
320148--320173	13	2.0	13	100	0	52	30	15	15	38	1.88
320128--320191	33	2.0	32	90	3	101	26	14	20	39	1.90
320273--320297	13	1.9	13	100	0	50	36	16	16	32	1.90
324135--324189	19	2.8	20	86	5	76	30	14	18	36	1.91
324218--324266	13	4.2	13	71	28	56	30	12	18	38	1.87
330003--330028	13	2.0	13	100	0	52	30	15	15	38	1.88
331915--331975	29	2.1	29	90	0	95	34	3	24	37	1.72
332465--332531	20	3.3	20	75	6	64	38	14	11	34	1.84
332476--332549	20	3.7	20	76	7	87	33	13	13	39	1.84
332717--332769	13	4.5	13	73	26	64	32	13	16	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332701--332769	33	2.1	33	89	5	104	28	13	20	37	1.90
333538--333564	12	2.2	12	100	0	54	33	25	0	40	1.56
334248--334273	13	2.0	13	100	0	52	30	15	15	38	1.88
334228--334293	33	2.0	33	87	0	96	25	16	15	42	1.87
336770--336844	28	2.7	28	78	17	77	22	28	20	29	1.98
336829--337016	51	3.7	51	83	5	238	31	26	11	31	1.91
336829--337014	102	1.8	102	87	6	279	31	26	11	31	1.91
342280--342379	49	2.0	50	88	1	148	29	26	21	24	1.99
342329--342584	61	4.4	60	77	15	277	27	28	19	24	1.98
342349--342574	54	4.0	55	78	11	251	28	28	19	23	1.98
342349--342574	109	2.0	112	83	7	289	28	28	19	23	1.98
342493--342770	100	2.8	95	83	11	357	25	30	19	25	1.98
342693--342877	54	3.3	54	85	9	228	28	27	21	23	1.99
342593--343050	211	2.1	212	89	5	701	25	31	19	24	1.98
342714--342895	61	3.1	59	78	15	214	24	28	20	25	1.99
342924--343050	61	2.1	61	95	0	227	24	33	17	24	1.96
342433--343185	155	4.9	153	77	12	763	25	30	19	24	1.98
342390--343185	311	2.6	301	85	8	927	25	30	19	24	1.98
343054--343137	25	3.2	25	63	18	62	26	28	21	23	1.99
343054--343249	54	3.5	55	82	11	263	26	28	21	23	1.99
342899--343409	209	2.4	209	91	1	837	25	30	19	24	1.98
342593--343430	364	2.3	365	92	3	1376	25	30	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343108--343430	155	2.1	149	87	7	447	24	29	19	26	1.98
343263--343402	55	2.6	55	89	1	210	27	29	20	22	1.99
343407--343610	45	4.6	45	77	9	179	19	28	12	39	1.88
343456--343610	42	3.6	42	78	13	163	20	25	14	40	1.90
343383--343655	85	3.2	89	78	11	234	19	27	13	39	1.89
347029--347102	28	2.7	26	80	14	78	22	27	21	28	1.99
347088--347204	51	2.3	52	86	7	168	29	25	12	31	1.93
347138--347288	79	1.9	79	86	2	214	28	26	13	31	1.94
347057--347301	130	1.9	130	84	6	327	28	25	13	32	1.93
347523--347567	22	2.0	22	100	0	90	13	8	8	68	1.38
349552--349614	33	1.9	33	83	6	83	36	12	11	39	1.79
349667--349693	13	2.1	13	100	0	54	40	14	14	29	1.86
352486--352558	20	3.6	21	76	9	62	35	15	20	28	1.93
352583--352639	20	2.8	21	81	2	62	43	10	12	33	1.76
353754--353843	13	6.0	13	69	26	54	34	13	16	35	1.88
353767--353829	19	3.7	18	76	24	73	33	11	17	38	1.85
353753--353842	32	2.8	32	93	0	153	33	13	16	36	1.88
356106--356176	27	2.6	27	97	0	133	22	43	19	14	1.87
358657--358733	28	2.7	27	80	11	84	31	24	9	35	1.87
358712--358934	79	2.8	78	85	6	297	30	20	8	39	1.83
358614--358812	107	1.9	105	86	4	283	31	21	7	39	1.81
360370--360478	20	5.8	19	76	18	104	31	14	12	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360402--360478	40	1.9	40	94	0	136	28	16	12	41	1.86
362770--362938	51	3.3	51	83	1	178	29	26	11	31	1.92
364500--364554	19	2.9	19	97	0	101	34	10	14	40	1.81
366963--367304	52	6.5	53	70	14	199	29	25	12	32	1.92
367026--367443	107	3.9	106	72	11	323	27	27	14	30	1.95
366968--367303	104	3.2	103	71	13	288	30	25	12	32	1.92
367288--367364	28	2.8	28	87	0	100	23	33	19	23	1.97
366966--367371	212	1.9	212	87	3	602	28	26	13	31	1.94
367318--367519	78	2.6	79	82	3	230	24	30	16	28	1.96
369852--369898	16	2.9	16	79	14	60	63	4	4	27	1.31
369912--369953	14	2.9	14	82	10	50	64	4	0	30	1.14
370176--370232	23	2.5	23	78	18	66	42	3	1	52	1.28
370190--370248	13	4.6	12	76	17	57	45	1	1	50	1.21
370213--370247	16	2.2	16	94	0	61	45	0	2	51	1.16
371389--371433	20	2.2	20	84	7	56	35	24	11	28	1.90
374501--374528	3	9.3	3	100	0	56	32	0	0	67	0.91
374778--374830	16	3.4	16	80	15	65	32	0	5	62	1.19
374796--374836	10	4.5	10	77	22	54	29	0	7	63	1.21
376226--376269	23	1.9	23	81	9	54	50	2	2	45	1.27
377995--378049	24	2.3	24	93	3	94	38	5	3	52	1.42
393853--395735	42	44.7	42	75	6	1255	14	29	19	36	1.92
395819--395850	17	2.0	17	88	11	50	3	21	12	62	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396192--396277	33	2.6	33	90	5	129	68	3	2	25	1.17
396259--396315	20	2.8	20	78	14	64	75	7	3	14	1.14
397590--397644	14	3.6	14	77	18	56	20	3	5	70	1.22
397583--397675	33	2.7	34	88	8	136	24	2	5	67	1.22
400909--400942	3	11.3	3	100	0	68	67	0	32	0	0.91
402399--402451	20	2.7	21	85	11	76	30	13	20	35	1.91
402492--402544	20	2.6	21	82	8	65	28	15	16	39	1.89
402532--402556	13	1.9	13	100	0	50	36	16	16	32	1.90
402566--402606	20	2.0	20	95	0	73	31	9	21	36	1.86
405024--405055	13	2.5	13	94	0	55	31	18	15	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10