genome.fa.s295.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold295
Parameters: 2 7 7 80 10 50 1000
Length:  1524207

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  8  of  10  ( 1174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968045--968382	85	4.0	83	79	12	332	42	13	23	20	1.88
968062--968566	41	12.4	41	76	10	341	39	14	24	21	1.90
968106--968379	129	2.1	127	84	8	344	41	14	24	19	1.89
968341--968450	34	3.2	34	84	2	141	36	15	25	22	1.94
968535--969256	62	11.7	62	86	2	891	31	18	24	24	1.98
968555--969574	186	5.4	186	81	7	1087	31	19	24	24	1.98
969238--969275	19	2.0	19	100	0	76	31	15	36	15	1.90
969114--969399	143	2.0	143	88	0	428	31	17	26	24	1.97
969176--969337	81	2.0	81	90	2	254	32	17	26	23	1.97
969257--969574	62	5.2	62	86	3	446	31	19	25	23	1.98
969257--969578	122	2.6	121	87	4	448	31	18	26	23	1.98
980508--980582	20	3.8	20	81	0	96	40	14	13	32	1.85
981017--981054	8	4.6	8	84	15	51	0	13	0	86	0.56
981018--981053	10	3.8	9	86	13	54	0	11	0	88	0.50
981017--981051	17	2.0	18	94	5	63	0	14	0	85	0.59
981018--981054	11	3.7	10	89	10	58	0	10	0	89	0.49
985567--985687	52	2.3	52	94	0	215	28	17	18	35	1.93
985567--985707	52	2.7	51	87	4	203	30	17	18	34	1.94
985696--985720	13	1.9	13	100	0	50	36	16	16	32	1.90
985785--985809	13	1.9	13	100	0	50	32	16	16	36	1.90
985763--985829	33	2.0	33	88	0	98	40	13	11	34	1.81
986510--986558	23	2.2	22	81	3	53	63	14	4	18	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986764--987054	80	3.7	79	81	7	293	33	12	25	29	1.92
986994--987105	51	2.2	51	88	0	161	32	14	25	27	1.95
986906--987182	130	2.1	131	84	2	351	32	12	26	28	1.93
987039--987404	80	4.6	79	84	2	446	33	13	24	27	1.93
986815--987264	210	2.2	211	85	4	599	33	13	24	28	1.93
987039--987404	159	2.3	159	85	0	480	33	13	24	27	1.93
990148--990349	80	2.5	79	87	0	296	38	11	21	28	1.89
990879--990917	18	2.2	18	100	0	78	46	17	23	12	1.83
992700--992877	42	4.4	40	75	11	148	35	15	29	19	1.92
993226--993674	36	12.3	36	69	13	235	36	14	25	22	1.93
993265--993333	32	2.2	31	87	10	95	26	14	31	27	1.95
993235--993368	33	3.9	33	76	14	119	28	15	29	26	1.96
993322--993520	111	1.8	108	78	12	226	39	15	24	21	1.91
993512--993709	43	5.0	41	74	12	137	41	13	24	20	1.88
993440--993709	117	2.4	111	81	10	312	39	14	24	21	1.91
993787--993848	30	2.1	30	81	6	72	32	9	25	32	1.88
996941--996973	17	2.0	17	88	5	50	75	3	0	21	0.93
997146--997493	79	4.4	79	79	8	334	31	24	11	33	1.91
999316--999816	156	3.2	157	83	1	535	39	17	14	27	1.89
1001982--1002417	151	2.9	149	79	10	440	48	9	8	33	1.65
1007473--1007525	20	2.6	21	84	6	72	43	11	15	30	1.81
1007473--1007546	21	3.6	20	83	3	76	40	10	16	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009061--1009447	167	2.3	168	81	6	421	30	11	8	49	1.69
1018284--1018309	3	8.7	3	100	0	52	30	0	0	69	0.89
1021069--1021110	21	2.0	21	85	0	57	47	2	9	40	1.49
1021106--1021179	24	3.2	24	84	5	107	50	13	0	36	1.42
1021105--1021188	22	3.7	23	78	9	91	52	11	1	34	1.46
1024332--1024433	12	8.4	12	70	21	61	33	0	1	63	1.12
1024399--1024439	20	2.0	20	86	9	57	29	0	0	70	0.87
1025450--1025489	20	2.1	19	85	4	53	12	15	5	67	1.38
1038024--1038097	33	2.2	33	80	11	78	39	1	0	59	1.06
1038091--1038164	26	2.9	26	76	13	82	58	2	0	39	1.13
1040691--1040717	13	2.1	13	100	0	54	29	14	14	40	1.86
1040702--1040757	19	2.9	19	91	2	85	32	14	12	41	1.83
1042605--1042670	32	2.1	32	100	0	132	31	34	9	24	1.87
1045144--1045195	20	2.4	21	81	12	61	3	25	50	21	1.65
1045628--1045665	13	2.9	13	96	0	67	34	18	15	31	1.92
1051836--1051886	20	2.5	20	83	0	66	31	15	11	41	1.83
1052680--1052724	22	2.0	22	95	0	81	33	20	4	42	1.72
1053319--1053359	21	2.0	21	86	13	59	43	12	0	43	1.41
1054798--1054848	22	2.3	22	89	0	75	33	13	9	43	1.77
1057025--1057059	2	17.5	2	100	0	70	51	0	0	48	1.00
1057982--1058740	155	4.9	154	76	7	571	28	12	18	40	1.87
1057982--1058792	310	2.6	309	78	8	722	28	13	17	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063981--1064015	14	2.5	14	90	9	54	54	22	8	14	1.67
1064672--1064706	18	1.9	18	100	0	70	17	17	20	45	1.85
1066178--1066460	79	3.6	78	78	9	238	30	23	11	35	1.90
1066801--1066827	13	2.1	13	100	0	54	29	14	14	40	1.86
1066811--1066863	19	2.7	19	88	2	79	32	15	16	35	1.90
1066912--1066975	13	5.4	13	77	21	77	34	14	15	35	1.88
1066896--1066995	33	3.0	33	94	2	166	33	13	18	36	1.89
1066928--1067015	20	4.8	20	81	18	127	34	11	18	36	1.86
1068285--1068864	34	17.8	33	80	9	604	19	32	12	35	1.90
1068509--1068797	91	3.1	90	75	18	291	19	32	13	35	1.90
1068861--1069506	49	13.8	49	75	11	577	24	25	18	31	1.97
1068924--1069166	39	5.7	39	70	21	166	24	25	20	29	1.99
1068889--1069511	88	6.7	90	86	7	557	25	25	18	31	1.97
1069129--1069561	195	2.2	198	85	3	570	24	25	17	32	1.97
1069877--1070120	122	2.0	122	99	0	479	35	24	12	27	1.92
1075760--1075808	20	2.5	20	93	0	80	71	2	10	16	1.22
1078221--1078300	22	3.6	22	77	12	83	50	10	7	32	1.64
1078588--1078651	33	2.0	32	81	9	76	31	14	14	40	1.85
1079621--1079667	22	2.0	24	88	8	71	46	14	6	31	1.70
1079623--1079675	22	2.4	21	81	12	54	45	13	7	33	1.71
1079820--1079861	22	1.9	22	95	0	75	40	11	11	35	1.79
1079824--1079889	22	3.0	22	81	0	69	39	16	13	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1080425--1080471	22	2.1	22	88	0	67	44	12	12	29	1.80
1080434--1080479	22	2.1	22	87	0	65	43	8	10	36	1.71
1081009--1081033	13	1.9	13	100	0	50	32	16	16	36	1.90
1084326--1084386	22	2.8	22	76	0	68	47	14	8	29	1.73
1087833--1087869	19	2.0	18	94	5	65	40	10	16	32	1.83
1087895--1087948	20	2.7	20	91	5	83	31	12	18	37	1.89
1094731--1094758	13	2.2	13	100	0	56	28	14	14	42	1.84
1094712--1094809	20	5.7	20	64	32	73	28	15	15	40	1.87
1094708--1094804	32	3.0	32	89	3	158	28	15	16	39	1.89
1094860--1094912	20	2.7	20	88	5	72	33	13	18	33	1.90
1097434--1097640	111	1.9	111	95	1	380	48	12	15	23	1.79
1101172--1101198	13	2.1	13	100	0	54	29	14	14	40	1.86
1103685--1103743	13	4.1	13	76	23	64	30	13	15	40	1.86
1103774--1103811	20	1.9	20	94	0	67	31	10	18	39	1.85
1103773--1103841	33	2.1	33	86	10	97	31	10	18	39	1.84
1104751--1104797	13	3.4	13	83	16	67	38	0	0	61	0.96
1104754--1104819	29	2.3	29	83	0	78	50	1	0	48	1.10
1113624--1113657	17	2.0	17	94	0	59	32	5	5	55	1.48
1114385--1114437	17	3.0	17	78	13	54	49	5	1	43	1.37
1115875--1115912	20	1.9	20	88	0	58	42	10	15	31	1.81
1125473--1125588	20	5.8	20	84	0	151	41	13	12	32	1.82
1125474--1125588	40	2.9	40	94	0	203	40	13	12	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126377--1126431	20	2.7	21	84	13	71	40	20	9	30	1.83
1126459--1126513	20	2.8	19	88	5	74	36	20	10	32	1.87
1126377--1126595	83	2.7	83	93	3	363	33	19	16	31	1.94
1126541--1126602	19	3.2	19	88	11	90	33	17	14	33	1.90
1126563--1126627	33	2.0	32	87	3	94	41	15	13	29	1.86
1129846--1129903	18	3.3	17	75	15	55	50	8	0	41	1.33
1137899--1138058	63	2.5	63	88	2	232	31	21	16	30	1.95
1138948--1138987	12	3.3	12	85	0	53	2	17	2	77	0.99
1142214--1142271	20	2.7	22	84	7	84	24	13	12	50	1.76
1144623--1145144	79	6.6	79	82	6	540	28	23	12	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10