genome.fa.s323.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold323
Parameters: 2 7 7 80 10 50 1000
Length:  1512004

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1052 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328247--328303	14	3.9	14	76	6	51	38	10	22	28	1.87
328292--328347	21	2.6	22	94	5	105	37	10	25	26	1.88
328335--328365	10	3.1	10	90	0	53	41	6	29	22	1.78
328460--328513	20	2.7	20	80	8	65	29	14	16	38	1.89
328552--328592	21	2.0	21	85	9	57	39	9	12	39	1.76
329898--329935	13	2.9	13	88	0	58	36	15	13	34	1.87
330378--330421	20	2.1	22	87	8	65	20	47	27	4	1.69
331799--331847	24	2.1	24	82	14	59	44	0	24	30	1.54
332458--332525	33	2.1	32	88	2	100	36	19	13	30	1.90
333889--333941	21	2.6	21	85	8	65	33	7	18	39	1.79
333977--334115	52	2.7	52	80	5	149	31	15	11	41	1.82
335116--335188	36	2.1	35	94	2	128	27	15	16	41	1.88
336989--337045	19	2.9	19	86	2	78	36	14	19	29	1.91
345274--345329	19	2.9	19	89	2	85	35	12	19	32	1.89
345314--345340	13	2.1	13	100	0	54	40	14	14	29	1.86
346829--346879	21	2.5	21	83	3	68	43	15	13	27	1.85
346931--346955	13	1.9	13	100	0	50	32	16	16	36	1.90
346911--346978	33	2.1	33	88	2	102	35	17	14	32	1.91
347016--347054	20	1.9	21	94	5	71	43	20	10	25	1.83
350788--350830	18	2.4	18	96	0	77	48	13	6	30	1.69
351219--351244	13	2.0	13	100	0	52	30	15	15	38	1.88
351199--351262	32	2.0	33	87	3	94	28	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353838--353863	13	2.0	13	100	0	52	38	15	15	30	1.88
355940--355970	15	2.1	15	93	0	53	12	22	16	48	1.80
357775--357819	21	2.1	21	84	8	56	22	20	4	53	1.63
360016--360074	29	2.0	29	90	6	93	28	11	16	42	1.84
363348--363372	13	1.9	13	100	0	50	32	16	16	36	1.90
368933--369008	20	3.8	20	78	7	73	39	15	17	27	1.90
369060--369084	13	1.9	13	100	0	50	32	16	16	36	1.90
369040--369107	33	2.1	33	88	2	102	38	17	13	30	1.88
372059--372096	10	3.4	11	86	13	51	34	15	0	50	1.45
372060--372096	13	3.2	12	88	11	51	32	16	0	51	1.45
374193--374229	3	12.3	3	100	0	74	67	0	0	32	0.91
374701--374747	21	2.2	21	96	0	85	51	17	14	17	1.77
378705--378731	2	13.5	2	100	0	54	51	0	0	48	1.00
380043--380081	2	19.5	2	94	0	69	51	2	0	46	1.14
381084--381140	21	3.0	20	76	23	70	36	0	0	63	0.95
382965--383011	24	1.9	25	86	4	69	40	0	0	59	0.97
383718--383775	19	3.0	19	89	2	89	32	15	13	37	1.87
385937--386090	51	3.3	48	73	19	164	42	12	15	29	1.84
385987--386057	20	3.6	20	87	9	110	39	14	14	32	1.85
386532--386565	9	3.8	9	92	7	52	2	0	5	91	0.51
388412--388534	61	2.0	61	100	0	246	45	13	17	23	1.84
389948--390709	73	10.5	72	77	7	580	54	12	2	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389941--390709	146	5.3	145	77	8	651	54	12	2	31	1.50
389948--390709	219	3.5	217	78	8	705	54	12	2	31	1.50
390552--390662	30	3.1	38	67	26	107	53	11	2	32	1.51
391368--391399	15	2.1	15	94	5	55	59	6	0	34	1.23
391485--391538	8	6.9	8	83	12	67	37	3	14	44	1.63
391791--391873	38	2.2	36	77	12	85	59	2	4	33	1.32
394718--394770	20	2.6	20	87	3	70	41	9	15	33	1.79
394853--394902	20	2.5	20	86	3	64	28	14	12	46	1.79
395352--395399	13	4.1	13	70	25	52	33	16	16	33	1.92
395331--395399	34	2.1	32	86	10	95	34	15	17	31	1.92
402335--402380	21	2.2	21	84	7	58	65	4	0	30	1.12
402332--402388	29	2.0	29	82	0	69	64	5	1	28	1.25
405363--405539	79	2.2	79	86	4	232	27	23	13	35	1.92
406325--406359	13	2.7	13	90	0	61	34	17	17	31	1.93
406352--406453	34	3.0	33	78	14	109	36	7	23	32	1.84
406487--406622	53	2.6	53	96	0	245	27	16	18	36	1.93
406540--406622	19	4.6	19	66	27	63	26	15	19	38	1.91
406593--406662	20	3.5	20	77	12	74	30	14	17	38	1.89
406702--406742	21	2.0	21	90	9	66	36	7	14	41	1.74
406964--407022	28	2.0	29	83	9	75	30	23	13	32	1.93
406950--407379	79	5.5	77	80	5	423	27	24	12	35	1.91
406946--407386	158	2.8	160	80	4	502	27	24	12	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409876--409914	20	1.9	21	89	5	62	33	12	10	43	1.77
414024--414077	27	2.0	27	81	0	63	24	16	33	25	1.96
416247--416300	20	2.7	20	91	5	83	38	12	14	33	1.85
416683--416712	13	2.3	13	100	0	60	30	16	13	40	1.87
416633--416762	63	2.1	63	86	2	181	30	17	13	39	1.88
419122--419277	79	2.0	79	85	2	215	27	25	13	33	1.93
421129--421163	4	8.8	4	93	0	61	22	2	0	74	0.95
431447--431492	8	5.4	8	87	12	65	86	0	13	0	0.56
431447--431497	7	7.6	7	78	12	54	86	0	13	0	0.58
431454--431500	10	5.0	10	82	10	55	85	0	14	0	0.61
431447--431485	18	2.2	18	100	0	78	89	0	10	0	0.48
431447--431500	26	2.0	26	92	3	90	85	0	14	0	0.61
433318--433532	31	6.9	30	83	6	216	24	30	15	30	1.95
433318--433519	61	3.2	61	84	6	237	25	30	14	29	1.95
433342--433627	31	9.0	32	76	11	198	20	30	15	33	1.94
433629--433682	27	2.0	27	88	0	81	24	31	14	29	1.95
433726--433883	43	3.4	49	82	11	213	25	22	18	33	1.96
434100--434162	19	3.6	19	70	24	66	34	9	17	38	1.82
434237--434365	52	2.5	52	97	0	249	34	17	19	28	1.95
437544--438479	61	15.4	61	85	3	1156	26	26	18	27	1.98
437544--438479	181	5.1	182	86	3	1197	26	26	18	27	1.98
439955--439994	20	2.0	20	85	0	53	35	12	10	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448553--448608	19	2.8	20	79	12	71	32	14	16	37	1.88
448594--448620	13	2.1	13	100	0	54	40	14	14	29	1.86
448925--448954	13	2.3	13	100	0	60	30	16	13	40	1.87
451366--451643	79	3.6	80	81	9	317	29	24	11	34	1.91
458476--458505	13	2.3	13	94	0	51	36	10	16	36	1.82
458551--458604	19	2.8	20	85	5	83	40	11	14	33	1.82
459615--459663	15	3.2	15	85	2	71	46	0	6	46	1.27
460152--460321	90	1.9	90	86	2	243	37	14	19	29	1.91
460845--460879	18	1.9	18	88	0	52	25	2	0	71	1.00
461400--461453	26	2.1	26	83	10	67	44	7	1	46	1.42
461658--461698	16	2.5	17	85	14	59	39	4	9	46	1.58
463905--464339	153	2.9	151	78	7	434	32	8	8	51	1.62
465525--466267	157	4.7	157	84	4	906	27	9	16	46	1.77
465529--466465	157	5.9	153	78	9	782	28	9	16	46	1.77
466287--466325	18	2.2	18	86	9	53	43	0	10	46	1.37
465525--466336	316	2.6	311	81	6	751	28	9	16	46	1.77
465525--466465	474	2.0	472	80	8	1070	28	9	16	46	1.77
466779--466825	23	2.0	23	100	0	94	40	12	8	38	1.74
467475--467518	23	1.9	23	85	0	61	47	9	4	38	1.56
467491--467533	18	2.4	19	78	21	56	53	11	2	32	1.50
468353--468382	2	15.0	2	100	0	60	50	0	0	50	1.00
468894--468973	16	5.0	16	84	0	79	17	11	30	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469198--469236	18	2.2	18	86	9	53	51	2	0	46	1.14
470460--470502	22	2.0	21	82	8	52	44	2	4	48	1.36
473833--473886	21	2.6	20	83	13	65	33	1	0	64	1.04
473853--473894	21	2.2	20	83	12	52	42	0	0	57	0.99
473877--474001	34	3.4	38	77	11	143	42	0	0	56	1.10
476810--476857	20	2.4	19	86	6	60	81	0	16	2	0.79
477622--477772	57	2.6	58	87	2	223	31	12	10	45	1.76
477697--477787	29	3.1	29	69	17	80	29	12	12	46	1.77
477622--477792	58	3.0	57	84	3	218	30	13	11	44	1.79
477697--477878	97	1.9	98	87	3	269	28	13	12	45	1.79

Tables:   1   2   3   4   5   6   7   8   9