genome.fa.s323.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold323
Parameters: 2 7 7 80 10 50 1000
Length:  1512004

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 1052 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1062206--1062573	55	6.6	56	82	8	428	28	14	32	25	1.94
1061951--1062573	28	22.2	28	83	7	444	26	15	31	26	1.96
1064610--1064634	13	1.9	13	100	0	50	36	16	16	32	1.90
1064681--1064718	20	1.9	20	100	0	76	39	10	15	34	1.82
1072221--1072431	97	2.2	94	87	3	287	32	14	25	27	1.94
1073196--1073220	10	2.5	10	100	0	50	60	12	8	20	1.57
1074203--1074233	13	2.4	13	94	0	53	35	12	16	35	1.87
1074181--1074249	33	2.1	33	86	5	95	37	18	11	31	1.87
1074278--1074328	20	2.6	19	87	9	68	35	17	15	31	1.92
1074887--1074962	21	3.5	22	82	5	93	26	31	3	38	1.75
1076851--1076879	13	2.2	13	100	0	58	41	17	13	27	1.87
1086749--1086780	14	2.4	14	90	10	50	25	0	0	75	0.81
1091851--1091881	11	2.8	11	95	0	53	25	9	19	45	1.81
1092660--1092786	52	2.4	52	87	5	168	27	25	12	34	1.92
1092825--1092901	28	2.8	28	83	0	91	23	33	19	23	1.97
1092935--1093173	80	3.0	80	85	3	320	24	23	14	38	1.92
1093094--1093261	51	3.3	50	85	6	180	29	26	13	30	1.94
1093275--1093329	28	1.9	29	85	3	76	23	18	20	38	1.93
1105556--1105599	10	4.3	10	88	5	61	81	11	2	4	0.92
1105547--1105604	10	5.8	10	80	11	57	82	10	3	3	0.90
1106823--1106909	28	3.1	28	61	12	70	26	27	19	26	1.99
1106603--1107148	61	9.3	56	83	7	548	26	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1106598--1107148	122	4.7	120	81	10	642	26	27	20	26	1.99
1107131--1107268	41	3.2	45	75	17	141	18	26	14	41	1.88
1107173--1107388	120	1.8	116	81	11	269	20	24	12	42	1.87
1109499--1109679	51	3.4	53	82	8	208	28	24	12	34	1.92
1109662--1109738	28	2.8	28	84	7	95	24	33	18	23	1.96
1109721--1109839	51	2.3	51	80	0	139	31	25	10	33	1.89
1109772--1110009	80	3.0	81	89	3	347	25	23	13	36	1.92
1109792--1110004	79	2.7	79	91	2	320	24	23	14	37	1.92
1109932--1110098	51	3.3	50	86	5	185	29	27	11	31	1.92
1110081--1110136	28	2.0	28	92	0	94	23	30	16	30	1.96
1110086--1110146	28	2.2	28	88	5	88	22	26	21	29	1.99
1112917--1113390	166	2.9	165	87	4	663	30	10	8	50	1.67
1114005--1114045	11	3.8	11	84	12	50	78	0	19	2	0.87
1114017--1114049	11	3.1	11	86	4	50	81	0	12	6	0.85
1114095--1114121	12	2.2	12	100	0	54	0	22	11	66	1.22
1114968--1115439	162	2.9	161	81	7	535	37	11	12	38	1.80
1115960--1116335	155	2.4	153	86	4	493	24	17	20	37	1.94
1122970--1123022	21	2.6	21	84	3	72	39	15	15	30	1.87
1123052--1123119	33	2.1	32	84	13	86	35	17	14	32	1.91
1124694--1124770	32	2.4	32	77	0	82	24	23	25	25	2.00
1124724--1125294	28	20.0	28	81	5	565	21	16	29	31	1.96
1124720--1125297	56	10.1	56	83	4	622	22	16	29	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1124721--1125294	84	6.7	83	82	5	626	22	16	29	31	1.96
1124721--1125299	255	2.2	256	85	3	743	22	16	30	31	1.96
1133518--1133542	13	1.9	13	100	0	50	40	8	16	36	1.77
1134784--1134857	20	3.7	20	81	3	103	35	13	20	31	1.91
1134802--1134877	21	3.7	21	82	3	109	40	11	18	28	1.86
1134784--1134877	41	2.3	41	100	0	188	38	12	19	29	1.89
1134916--1134941	13	2.0	13	100	0	52	38	15	15	30	1.88
1135399--1135465	37	1.9	35	88	11	102	32	11	25	29	1.92
1136558--1136599	21	2.0	21	85	0	57	42	4	28	23	1.74
1136985--1137145	84	1.9	84	80	9	186	53	3	17	25	1.60
1138652--1138676	13	1.9	13	100	0	50	36	16	16	32	1.90
1139827--1139873	23	2.0	23	100	0	94	31	4	12	51	1.59
1140493--1140566	20	3.7	20	81	3	103	35	13	20	31	1.91
1140511--1140586	21	3.7	21	82	3	109	40	11	18	28	1.86
1140493--1140586	41	2.3	41	100	0	188	38	12	19	29	1.89
1140625--1140650	13	2.0	13	100	0	52	38	15	15	30	1.88
1141108--1141174	37	1.9	35	88	11	102	32	11	25	29	1.92
1146561--1146597	13	2.8	13	91	0	65	35	16	13	35	1.88
1149102--1149155	20	2.7	19	77	11	56	29	16	18	35	1.93
1155814--1155864	20	2.6	20	87	3	68	27	13	19	39	1.90
1158195--1158235	22	2.0	21	86	13	59	41	4	21	31	1.74
1164581--1164605	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1164558--1164625	33	2.1	33	88	2	102	32	14	17	35	1.91
1164676--1164728	20	2.7	20	87	0	70	37	16	15	30	1.90
1166960--1167131	90	1.9	91	87	1	256	42	10	18	29	1.83
1167010--1167135	20	5.8	20	72	17	99	42	10	15	30	1.81
1169648--1169714	33	2.0	33	88	0	98	34	11	13	40	1.81
1169668--1169692	13	1.9	13	100	0	50	36	16	16	32	1.90
1169761--1169785	13	1.9	13	100	0	50	32	16	16	36	1.90
1169774--1169914	52	2.7	52	91	0	228	34	18	17	30	1.94
1187580--1187621	13	3.2	13	82	0	57	42	14	9	33	1.78
1193835--1193890	19	2.9	19	86	7	78	35	14	17	32	1.90
1193875--1193901	13	2.1	13	100	0	54	40	14	14	29	1.86
1194622--1194647	13	2.0	13	100	0	52	30	15	15	38	1.88
1200647--1200685	13	3.0	13	88	0	60	28	20	15	35	1.93
1200817--1200857	22	2.0	20	86	13	57	31	21	4	41	1.74
1203168--1203192	13	1.9	13	100	0	50	32	16	16	36	1.90
1203148--1203215	33	2.1	33	88	2	102	35	17	14	32	1.91
1204596--1204666	8	8.8	8	84	7	90	85	12	1	0	0.65
1204593--1204666	11	6.9	11	79	11	75	86	12	1	0	0.63
1204594--1204659	19	3.4	19	84	12	89	86	13	0	0	0.57
1204595--1204659	9	6.8	9	83	16	78	86	13	0	0	0.58
1204593--1204666	1	74.0	1	72	0	58	86	12	1	0	0.63
1205777--1206131	117	3.0	116	82	6	403	27	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1205750--1206345	178	3.5	171	74	14	457	26	26	19	27	1.99
1205776--1206135	61	6.1	60	76	11	336	27	26	19	26	1.99
1206164--1206399	61	3.9	61	84	4	282	25	27	20	27	1.99
1205930--1206340	215	1.9	216	84	7	550	26	27	20	25	1.99
1206147--1206399	123	2.1	121	84	7	331	25	27	20	26	1.99
1206384--1206485	43	2.4	43	80	8	111	21	27	14	36	1.93
1207163--1207352	20	8.8	20	75	16	132	27	15	14	42	1.86
1207201--1207239	13	3.0	13	92	0	69	28	15	17	38	1.91
1209655--1209761	51	2.1	51	91	3	171	29	22	13	34	1.92
1209764--1210034	108	2.5	107	85	5	350	26	25	14	32	1.95
1210003--1210119	51	2.3	51	80	2	146	31	25	10	32	1.89
1209969--1210216	130	1.9	129	81	6	295	29	25	11	33	1.91
1212212--1212503	48	6.1	48	77	6	297	27	20	15	37	1.92
1212151--1212482	95	3.5	95	81	0	396	25	20	15	37	1.92
1212505--1212602	47	2.1	47	88	1	144	22	26	12	38	1.89
1212686--1212745	29	2.1	29	100	0	120	16	30	20	33	1.94
1212734--1213096	93	3.9	92	84	3	460	14	27	17	40	1.88
1212734--1213096	186	2.0	185	87	1	530	14	27	17	40	1.88
1213192--1213514	84	3.9	84	76	6	298	18	25	13	43	1.86
1214343--1214402	20	3.0	20	73	4	59	31	15	18	35	1.91
1214388--1214480	43	2.2	43	92	0	150	30	23	16	30	1.96
1220787--1220836	21	2.4	22	87	9	70	30	20	0	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223738--1223766	10	2.7	11	94	5	51	51	0	13	34	1.42
1225414--1225510	51	1.9	51	95	0	176	42	12	19	25	1.86
1225465--1225542	32	2.5	32	91	2	122	42	11	19	26	1.85
1225530--1225582	20	2.7	20	90	0	79	37	15	13	33	1.86
1226513--1226705	28	6.7	28	83	7	208	21	16	32	30	1.95
1226498--1226701	86	2.3	90	83	9	260	22	17	30	29	1.96
1226513--1226705	56	3.3	58	82	5	230	21	16	32	30	1.95
1227065--1227111	24	2.0	24	86	0	67	31	29	19	19	1.96
1226815--1227201	28	14.0	28	83	4	471	29	28	17	23	1.97
1227340--1227566	48	4.7	48	91	0	337	20	27	16	34	1.95

Tables:   1   2   3   4   5   6   7   8   9