genome.fa.s323.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold323
Parameters: 2 7 7 80 10 50 1000
Length:  1512004

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 1052 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
892605--892680	21	3.7	21	80	3	100	42	11	17	28	1.84
892587--892680	41	2.3	41	98	0	179	39	12	18	29	1.88
892719--892744	13	2.0	13	100	0	52	38	15	15	30	1.88
896806--896836	15	2.1	15	93	0	53	48	16	22	12	1.80
898850--898928	20	3.7	21	75	15	72	26	13	15	44	1.84
898915--898953	13	3.0	13	96	0	69	30	17	15	35	1.91
900729--900795	17	4.3	17	76	21	83	41	0	16	41	1.48
900735--900790	28	2.0	28	100	0	112	39	0	14	46	1.44
901441--901513	20	3.6	20	81	3	101	35	13	19	31	1.91
901459--901534	21	3.7	21	80	3	100	42	11	17	28	1.84
901441--901534	41	2.3	41	98	0	179	39	12	18	29	1.88
901573--901598	13	2.0	13	100	0	52	38	15	15	30	1.88
904550--904595	22	2.1	22	83	0	56	41	4	32	21	1.73
905187--905213	13	2.1	13	100	0	54	29	14	14	40	1.86
905197--905253	19	2.9	19	84	2	78	33	17	15	33	1.92
905303--905351	13	4.2	13	75	24	63	32	12	18	36	1.88
905282--905351	33	2.1	34	89	7	108	32	12	20	34	1.90
910519--910595	20	3.8	20	84	6	102	41	12	14	31	1.83
912581--912622	15	2.8	16	78	10	52	28	16	2	52	1.56
913053--913084	15	2.1	15	94	0	55	28	28	0	43	1.55
914684--914713	13	2.3	13	100	0	60	36	6	16	40	1.75
915057--915496	106	4.2	106	83	3	478	34	23	7	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916708--916761	23	2.3	23	87	0	72	46	12	12	27	1.79
916712--916767	23	2.5	22	80	5	58	46	12	12	28	1.78
917211--917254	13	3.4	13	96	0	79	31	13	13	40	1.84
925962--926024	32	1.9	33	90	3	101	30	15	11	42	1.82
925942--926044	52	2.0	53	82	5	129	33	17	10	38	1.84
925990--926044	19	2.8	19	86	2	74	34	18	9	38	1.82
926088--926125	13	2.9	13	88	0	58	34	10	15	39	1.82
927216--927245	6	5.0	6	91	0	51	20	0	0	80	0.72
935714--935965	140	1.8	139	82	2	326	28	12	17	42	1.85
942370--942410	2	20.5	2	100	0	82	0	48	0	51	1.00
944326--944373	3	16.0	3	100	0	96	66	0	0	33	0.92
945510--945553	16	2.7	15	83	13	52	18	11	15	54	1.70
945516--945553	17	2.2	17	90	9	60	15	10	15	57	1.64
946742--946786	21	2.0	21	83	12	54	40	0	4	55	1.20
946913--946952	15	2.6	16	84	8	55	2	17	32	47	1.61
946901--946941	21	1.9	22	90	5	66	7	12	31	48	1.68
946928--946998	32	2.3	31	85	9	92	14	15	26	43	1.85
947089--947127	21	1.9	20	94	5	69	33	10	25	30	1.89
947269--947298	14	2.1	14	93	0	51	46	0	3	50	1.18
948977--949038	25	2.6	22	79	18	63	37	0	3	59	1.13
949054--949143	16	5.7	15	79	7	90	37	0	0	62	0.96
949054--949143	32	2.8	32	80	9	103	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949069--949115	22	2.1	22	88	7	69	34	0	0	65	0.93
949058--949141	26	3.4	23	72	20	64	35	0	0	64	0.94
951346--951403	2	30.5	2	76	10	59	46	1	5	46	1.35
951558--951591	16	2.2	15	89	5	50	26	5	8	58	1.51
951664--951706	22	2.0	22	85	0	59	37	2	0	60	1.10
952166--952230	21	3.2	20	82	8	78	41	0	1	56	1.08
953895--953939	18	2.6	18	85	3	56	46	17	15	20	1.84
959147--959721	28	19.4	30	85	7	598	20	17	31	30	1.96
959147--959719	60	9.7	58	87	5	606	20	17	31	30	1.96
969257--969301	23	2.0	23	86	0	63	75	6	6	11	1.18
973849--973874	13	2.0	13	100	0	52	38	15	15	30	1.88
973831--973894	33	2.0	32	87	9	94	39	18	14	28	1.90
974698--974840	51	2.8	51	90	2	225	40	11	20	27	1.87
980228--981020	310	2.6	308	79	6	861	39	18	17	24	1.92
980225--981020	155	5.1	156	78	5	720	39	18	17	24	1.92
983210--983235	13	2.0	13	100	0	52	30	15	15	38	1.88
983189--983258	34	2.1	33	89	7	106	34	12	20	32	1.90
983694--983719	13	2.0	13	100	0	52	38	15	15	30	1.88
985938--985982	21	2.1	21	84	8	56	53	4	20	22	1.63
989893--989931	13	3.0	13	100	0	78	30	15	15	38	1.88
992485--992510	13	2.0	13	100	0	52	38	15	15	30	1.88
994793--994822	3	10.0	3	92	0	51	30	0	36	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001191--1001301	56	1.9	57	94	3	197	37	5	26	30	1.79
1001260--1001287	14	2.0	14	100	0	56	42	7	50	0	1.30
1001915--1002010	19	4.9	19	83	3	129	31	20	16	31	1.95
1001917--1002010	39	2.4	39	98	0	179	30	20	17	31	1.95
1002060--1002108	13	4.2	13	70	24	54	32	12	20	34	1.90
1002039--1002108	34	2.1	33	92	7	115	32	12	21	32	1.91
1003934--1003999	9	7.4	9	79	3	53	77	3	1	18	0.98
1003993--1004181	63	3.0	63	85	0	272	36	19	19	24	1.95
1006293--1006641	97	3.6	97	86	1	468	28	27	11	31	1.92
1007592--1007638	22	2.1	22	84	0	58	12	21	21	44	1.85
1010445--1010510	31	2.1	31	91	5	107	27	40	7	24	1.82
1011770--1011802	12	2.6	13	95	4	59	84	6	9	0	0.76
1012847--1012964	63	1.9	61	88	8	177	25	22	21	31	1.98
1012937--1013039	32	3.4	31	85	5	102	30	29	18	22	1.97
1013028--1013596	28	20.0	28	79	6	448	27	28	20	23	1.99
1013021--1013574	57	9.7	56	77	8	341	27	28	20	24	1.99
1012958--1013597	56	11.1	56	76	8	448	27	28	20	23	1.99
1013392--1014155	32	24.7	31	74	8	327	30	26	17	26	1.97
1012937--1014155	56	20.3	61	72	10	364	29	26	18	25	1.98
1013356--1013958	61	9.9	61	70	9	234	29	25	17	27	1.98
1014009--1014166	63	2.5	61	77	8	147	30	29	18	21	1.97
1014187--1014376	60	3.2	60	67	15	151	24	25	12	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014199--1014433	116	2.0	120	86	5	334	23	24	13	38	1.91
1015387--1015434	3	16.0	3	100	0	96	66	0	0	33	0.92
1015436--1015560	62	2.0	62	92	0	205	38	16	18	27	1.91
1015952--1015989	18	2.2	18	90	4	60	73	5	15	5	1.19
1017867--1018182	97	3.3	97	85	3	422	30	27	11	30	1.91
1019850--1020638	398	2.0	400	90	2	1237	23	22	17	35	1.95
1021110--1021201	48	1.9	48	88	0	139	29	21	11	36	1.89
1026713--1026939	111	2.0	111	99	0	445	44	14	12	28	1.82
1028883--1028909	13	2.1	13	100	0	54	40	7	14	37	1.74
1029821--1029888	33	2.1	33	88	5	102	29	17	29	23	1.97
1035580--1035614	6	5.8	6	96	0	52	40	0	8	51	1.33
1041620--1041666	16	3.1	16	79	17	55	70	10	14	4	1.31
1041934--1041972	1	39.0	1	84	0	51	92	5	2	0	0.46
1041942--1041972	12	2.6	12	100	0	62	93	6	0	0	0.35
1043007--1044036	28	36.3	28	86	3	953	27	31	15	25	1.95
1043713--1044111	28	13.5	31	83	8	328	30	30	18	20	1.96
1043730--1044014	64	4.7	64	87	6	318	31	32	17	18	1.94
1044222--1044353	48	2.8	48	81	4	167	21	25	16	36	1.94
1045818--1045852	6	5.8	6	96	0	52	40	0	8	51	1.33
1055640--1055668	14	2.1	14	93	6	51	20	0	0	79	0.74
1056488--1056524	10	3.8	10	89	7	58	10	10	0	78	0.97
1056514--1056547	17	1.9	18	88	5	52	2	17	0	79	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1056520--1056551	12	2.6	12	95	5	55	0	15	0	84	0.63
1057465--1057858	87	4.4	88	81	7	363	28	14	25	31	1.95
1057465--1057803	87	3.8	89	84	5	384	28	13	26	31	1.94
1059401--1059449	11	4.4	11	74	5	53	0	8	8	83	0.81
1059423--1059463	20	2.0	20	86	9	57	4	0	12	82	0.81
1060976--1061017	17	2.5	17	92	0	66	0	14	2	83	0.75
1061624--1061658	7	5.3	7	93	6	56	54	14	0	31	1.40
1061856--1062375	28	18.5	28	83	8	429	24	16	30	28	1.96
1061853--1062234	85	4.5	84	83	6	441	23	17	30	29	1.96
1062221--1062566	27	12.4	27	84	6	395	28	13	32	25	1.94

Tables:   1   2   3   4   5   6   7   8   9