genome.fa.s324.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold324
Parameters: 2 7 7 80 10 50 1000
Length:  2336777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  1  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444--483	3	14.0	3	89	10	66	65	35	0	0	0.93
444--483	17	2.4	17	91	8	64	65	35	0	0	0.93
444--483	20	2.0	20	100	0	80	65	35	0	0	0.93
957--985	14	2.0	15	93	6	51	65	0	0	34	0.93
1757--1802	25	1.9	25	86	8	69	58	2	2	36	1.22
1815--1846	13	2.3	15	89	10	50	56	0	0	43	0.99
6205--6275	30	2.4	30	100	0	142	25	21	28	25	1.99
7862--7952	45	2.0	45	93	0	155	25	25	14	35	1.93
8839--8960	61	2.0	61	100	0	244	42	16	9	31	1.81
14023--14379	50	7.2	50	90	2	560	31	19	20	29	1.97
14023--14379	99	3.6	100	91	1	558	31	19	20	29	1.97
14023--14379	149	2.4	148	93	1	608	31	19	20	29	1.97
18731--18840	46	2.3	50	79	6	129	33	18	17	30	1.94
26387--26412	3	8.7	3	100	0	52	69	0	0	30	0.89
28483--28515	2	16.5	2	100	0	66	48	0	0	51	1.00
29879--29919	2	20.5	2	100	0	82	0	48	0	51	1.00
29919--29960	2	21.0	2	100	0	84	50	0	0	50	1.00
36775--36810	18	2.0	18	88	0	54	25	25	33	16	1.96
38843--38904	2	31.0	2	96	0	115	48	0	0	51	1.00
40513--40563	21	2.4	21	76	0	57	33	0	1	64	1.05
40566--40598	13	2.5	13	95	0	57	63	3	0	33	1.10
42365--42446	37	2.3	37	81	6	98	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42390--42439	19	2.7	18	84	6	73	58	0	0	42	0.98
44716--44751	2	18.0	2	94	0	63	47	0	2	50	1.15
45198--45251	26	2.0	27	85	3	74	61	0	0	38	0.96
47457--47494	2	19.5	2	94	5	69	47	0	0	52	1.00
48343--48381	2	19.5	2	94	0	69	48	2	0	48	1.15
50084--50140	29	2.0	29	96	0	105	31	21	10	36	1.87
50842--50879	2	19.0	2	94	0	67	50	0	2	47	1.15
51881--51926	21	2.2	21	88	3	67	34	0	0	65	0.93
51880--51928	20	2.3	21	82	10	64	34	0	0	65	0.93
52055--52096	18	2.3	18	83	0	57	69	2	0	28	1.01
52973--53185	107	2.0	107	88	0	318	18	25	25	30	1.98
53609--53646	2	19.5	2	94	5	69	50	0	0	50	1.00
54110--54144	3	11.7	3	100	0	70	68	0	0	31	0.90
55406--55442	3	12.3	3	100	0	74	32	0	0	67	0.91
58422--58470	21	2.3	21	85	0	62	55	0	0	44	0.99
58629--58672	17	2.5	17	85	7	52	50	4	0	45	1.22
60163--60204	23	2.0	22	86	13	61	50	0	0	50	1.00
60171--60203	17	1.9	17	88	11	50	48	0	0	51	1.00
61694--61740	20	2.2	22	77	7	53	55	2	0	42	1.12
62089--62148	2	30.0	2	100	0	120	50	0	0	50	1.00
62892--62962	32	2.2	32	100	0	142	35	14	19	30	1.91
63688--63763	37	2.1	37	89	0	116	39	5	13	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64277--64305	11	2.5	12	88	11	51	62	0	0	37	0.96
65154--65204	14	3.7	15	77	17	56	60	1	0	37	1.08
65492--65528	18	2.1	18	90	10	58	43	2	0	54	1.14
65544--65582	12	3.1	13	85	14	55	56	5	0	38	1.22
65850--65901	17	2.9	18	84	15	65	59	1	1	36	1.19
66062--66112	25	2.0	25	100	0	102	56	3	0	39	1.18
66066--66129	25	2.5	25	87	7	85	53	4	3	39	1.38
66617--66648	7	4.6	7	96	0	55	53	0	0	46	1.00
67296--67339	19	2.2	20	88	4	63	61	0	0	38	0.96
68558--68600	22	2.0	22	86	9	61	69	2	2	25	1.12
70313--70356	19	2.2	20	84	4	54	38	2	0	59	1.10
70882--70910	3	9.7	3	100	0	58	65	0	0	34	0.93
73400--73436	3	12.3	3	100	0	74	32	0	0	67	0.91
74309--74350	4	10.5	4	89	0	57	50	7	0	42	1.30
74309--74350	10	4.2	10	90	0	57	50	7	0	42	1.30
74309--74350	6	7.0	6	88	0	57	50	7	0	42	1.30
75483--75523	19	2.2	19	95	0	73	39	9	19	31	1.84
75808--75888	40	2.0	40	100	0	162	29	14	17	38	1.90
79881--79910	1	30.0	1	100	0	60	0	100	0	0	0.00
81689--81732	16	2.6	18	78	10	56	54	2	0	43	1.12
81723--81817	49	1.9	50	82	6	122	43	1	1	54	1.14
82191--82216	1	26.0	1	100	0	52	0	100	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88636--88693	23	2.4	25	80	8	75	39	0	3	56	1.16
89413--89442	11	2.9	10	90	9	51	60	0	3	36	1.14
89524--89559	15	2.4	15	86	13	56	0	11	0	88	0.50
90303--90330	14	2.0	14	100	0	56	57	0	0	42	0.99
91075--91099	3	8.3	3	100	0	50	32	0	68	0	0.90
96942--96991	19	2.9	17	77	19	50	38	0	2	60	1.09
97547--97595	16	3.4	16	73	23	54	51	0	0	48	1.00
97746--97829	31	3.0	27	71	19	71	44	2	1	52	1.21
98428--98497	28	2.5	28	80	15	83	50	0	1	48	1.09
98811--98853	18	2.3	19	80	15	54	18	4	4	72	1.20
99022--99487	158	2.9	159	83	9	523	26	13	16	43	1.85
101050--101076	6	4.5	6	100	0	54	14	33	0	51	1.43
106851--106883	15	2.3	15	89	5	50	54	0	0	45	0.99
113979--114015	16	2.3	16	90	0	56	18	13	13	54	1.71
114256--114305	16	3.1	16	75	11	57	28	6	2	64	1.28
116240--116281	3	14.3	3	95	5	77	30	0	0	69	0.89
116279--116305	2	13.5	2	100	0	54	48	0	0	51	1.00
117766--117815	26	2.0	25	88	11	75	36	2	0	62	1.07
117766--117815	20	2.5	21	84	9	61	36	2	0	62	1.07
117839--117872	18	1.9	18	88	5	52	52	0	0	47	1.00
119830--119874	18	2.6	16	80	13	54	64	2	22	11	1.36
120272--120390	60	2.0	60	83	8	152	38	2	2	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120309--120402	30	3.1	30	86	6	113	40	4	1	54	1.27
120403--120455	22	2.4	21	87	6	70	60	1	0	37	1.08
120423--120499	25	3.3	22	75	21	59	62	2	1	33	1.17
121177--121224	19	2.6	18	76	6	51	58	0	0	41	0.98
122854--122902	17	2.8	18	81	12	57	67	2	2	28	1.13
123129--123167	14	2.7	15	88	4	53	15	0	7	76	0.99
123136--123168	15	2.1	16	88	5	50	15	0	9	75	1.03
123127--123168	22	1.9	22	85	0	57	16	0	7	76	1.00
123516--123573	24	2.4	24	88	0	80	17	13	39	29	1.88
123921--123968	23	2.0	23	84	4	60	43	0	0	56	0.99
123956--124007	18	2.7	20	80	17	65	42	0	0	57	0.98
123958--124007	19	2.7	19	79	14	68	42	0	0	58	0.98
123939--124007	27	2.6	26	75	6	75	44	0	0	55	0.99
123975--124066	32	2.8	32	80	8	87	43	2	0	54	1.12
123975--124024	17	2.9	18	74	11	52	44	0	0	56	0.99
124169--124217	21	2.3	22	89	3	73	36	0	0	63	0.95
124181--124229	21	2.2	21	82	7	53	44	0	0	55	0.99
124915--124954	21	1.9	21	90	10	64	60	0	0	40	0.97
124893--125004	51	2.3	48	77	10	111	58	1	2	37	1.23
125522--125549	3	9.3	3	100	0	56	67	0	0	32	0.91
126631--126692	20	3.2	20	80	11	74	53	1	0	45	1.10
126662--126703	11	3.7	11	79	14	50	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126645--126703	17	3.5	17	75	6	59	55	0	0	44	0.99
133290--133338	2	25.0	2	83	4	64	51	6	0	42	1.27
133421--133448	2	14.0	2	100	0	56	50	0	0	50	1.00
139195--139227	10	3.4	10	95	4	59	81	0	9	9	0.87
148494--149082	232	2.5	232	91	1	959	38	6	11	42	1.68
155018--155048	2	16.0	2	93	6	55	51	0	0	48	1.00
161820--161925	29	3.4	29	74	18	106	42	5	3	48	1.45
161800--161929	64	2.0	64	98	0	251	40	5	6	47	1.53
161800--161897	29	3.0	34	72	22	118	39	5	7	47	1.53
162970--163006	19	2.1	19	90	10	60	45	0	0	54	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16