genome.fa.s324.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold324
Parameters: 2 7 7 80 10 50 1000
Length:  2336777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  6  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
825757--825992	120	2.0	120	86	1	330	22	17	36	24	1.95
828063--828113	20	2.6	20	79	14	61	52	3	1	41	1.31
829785--829834	25	1.9	27	92	8	86	62	0	2	36	1.07
830622--830690	34	2.0	34	82	2	84	55	0	0	44	0.99
834171--834223	10	5.4	10	82	17	67	41	0	0	58	0.98
834171--834227	19	3.0	19	76	19	57	42	0	0	57	0.98
835880--835953	37	2.0	37	89	2	114	41	14	20	22	1.89
846350--846383	2	17.0	2	100	0	68	0	50	0	50	1.00
850809--850867	29	2.0	31	86	6	86	25	10	13	50	1.72
852877--852903	2	13.5	2	100	0	54	48	0	0	51	1.00
858720--858753	2	17.0	2	100	0	68	50	50	0	0	1.00
860044--860099	22	2.7	22	76	15	57	39	3	1	55	1.28
862831--862855	3	8.3	3	100	0	50	32	0	0	68	0.90
863151--863217	24	2.7	23	78	19	57	47	5	8	37	1.59
863163--863221	24	2.4	24	83	8	75	49	5	11	33	1.62
864095--864135	18	2.3	17	87	8	55	58	0	0	41	0.98
864095--864140	17	2.6	18	86	6	58	54	0	2	43	1.12
866769--866811	21	2.0	21	82	8	52	72	0	2	25	0.97
867604--867651	19	2.5	19	86	10	62	50	2	2	45	1.25
868680--868748	23	2.8	26	72	14	65	40	0	0	59	0.97
869420--869459	20	2.1	19	85	4	53	42	0	5	52	1.23
869449--869488	16	2.5	16	84	8	55	65	2	0	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
879277--879334	19	3.1	19	78	11	66	44	0	5	50	1.24
879844--879868	2	12.5	2	100	0	50	52	0	0	48	1.00
881817--881851	2	17.5	2	100	0	70	51	0	0	48	1.00
886187--886249	28	2.2	28	97	0	117	60	4	0	34	1.18
886188--886240	17	3.5	17	69	28	55	62	5	0	32	1.19
886494--886536	14	3.2	14	74	12	54	58	0	0	41	0.98
888279--888341	31	2.0	31	81	0	72	36	1	3	58	1.23
888298--888343	24	2.0	23	87	12	67	36	2	0	60	1.09
888623--888656	2	16.5	2	87	6	50	47	0	2	50	1.16
888704--888754	19	2.7	19	82	14	54	49	0	0	50	1.00
888685--888779	30	3.4	27	73	16	86	54	0	0	45	0.99
893130--893283	76	2.0	76	96	2	283	40	14	15	29	1.87
895302--895360	14	5.0	13	79	20	60	50	0	0	49	1.00
896022--896065	22	2.0	22	90	0	70	29	2	22	45	1.65
896213--896241	3	9.7	3	100	0	58	65	0	0	34	0.93
899009--899074	33	2.0	33	93	0	114	48	9	0	42	1.35
899097--899140	11	3.9	11	77	16	54	68	2	0	29	1.02
899533--899574	18	2.4	17	77	14	50	42	0	0	57	0.99
899747--899795	9	5.7	9	81	15	59	71	0	0	28	0.86
899750--899795	16	2.6	18	83	10	60	73	0	0	26	0.83
900113--900151	20	1.9	20	84	5	51	58	0	5	35	1.20
900572--900596	7	3.6	7	100	0	50	88	0	0	12	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901456--901480	3	8.3	3	100	0	50	68	0	0	32	0.90
902390--902435	23	2.1	21	84	15	58	34	0	10	54	1.36
902907--902945	20	2.0	21	90	10	64	48	0	0	51	1.00
904916--904955	21	1.9	21	89	0	62	60	0	0	40	0.97
905689--905715	14	1.9	14	100	0	54	29	0	0	70	0.88
907229--907321	22	4.1	24	69	24	67	51	1	0	47	1.07
908227--908290	31	2.1	31	100	0	128	46	12	9	31	1.73
909547--909572	5	5.2	5	100	0	52	61	0	38	0	0.96
909795--909824	2	15.0	2	100	0	60	50	0	0	50	1.00
911740--911780	17	2.4	17	87	0	55	39	2	0	58	1.11
915256--915285	13	2.4	12	94	5	51	63	0	0	36	0.95
916100--916143	16	2.7	16	83	13	54	31	0	0	68	0.90
916100--916145	17	2.8	18	81	15	55	32	0	0	67	0.91
917679--917740	26	2.6	24	77	10	65	43	1	0	54	1.09
917995--918056	19	3.2	19	68	17	54	37	0	3	59	1.13
919351--919384	15	2.3	15	94	0	59	70	0	0	29	0.87
920081--920130	3	16.7	3	100	0	100	68	0	0	32	0.90
920617--920681	3	21.7	3	100	0	130	66	0	0	33	0.92
920979--921121	67	2.1	67	83	6	173	40	3	7	48	1.49
922135--922205	32	2.1	34	85	10	94	50	0	0	49	1.00
922495--922525	16	1.9	16	93	0	53	58	0	0	41	0.98
922907--922984	21	3.6	22	67	18	56	42	1	0	56	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922948--923031	26	3.0	27	77	17	84	45	0	0	54	0.99
922943--923030	29	3.0	29	76	15	85	46	0	0	53	1.00
923056--923088	17	1.9	17	93	0	57	51	3	6	39	1.42
924061--924097	19	1.9	19	94	0	65	48	0	0	51	1.00
925863--925913	20	2.5	21	84	9	70	41	7	17	33	1.79
925959--925996	20	1.9	20	100	0	76	42	10	15	31	1.81
928496--928653	73	2.2	72	87	3	219	32	19	6	41	1.78
932467--932528	24	2.5	25	72	17	58	51	1	0	46	1.10
934090--934136	19	2.5	20	83	13	55	21	0	4	74	0.99
938596--938642	19	2.3	21	82	10	62	42	0	6	51	1.27
939629--939849	34	6.5	33	80	6	237	41	25	7	25	1.81
939629--939849	102	2.2	101	85	3	309	41	25	7	25	1.81
944256--944505	34	7.4	34	83	6	276	40	25	8	26	1.83
944257--944505	102	2.4	101	84	2	318	40	25	8	26	1.83
945168--945210	16	2.6	16	82	13	52	34	0	0	65	0.93
946418--946502	22	3.7	22	73	17	75	60	0	3	36	1.14
946416--946470	19	3.1	19	75	19	55	56	0	1	41	1.10
946813--946860	13	3.7	12	84	15	60	45	0	0	54	0.99
946815--946862	14	3.5	14	78	13	55	43	0	0	56	0.99
947070--947109	17	2.3	18	86	4	55	40	0	2	57	1.12
947533--947578	22	2.1	22	100	0	92	30	0	8	60	1.26
947701--947763	19	3.2	19	76	20	67	31	3	4	60	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948169--948216	16	2.9	16	78	12	53	58	8	0	33	1.28
948190--948254	27	2.3	28	79	15	71	61	3	0	35	1.12
948208--948294	27	3.3	27	74	18	76	63	3	0	33	1.11
948192--948277	27	3.4	25	76	17	65	61	2	0	36	1.09
948356--948407	1	52.0	1	80	0	50	0	11	0	88	0.52
948357--948405	7	6.9	7	88	6	64	0	12	0	87	0.54
948356--948408	8	7.0	8	87	8	76	0	13	0	86	0.56
948356--948406	22	2.3	22	93	0	84	0	11	0	88	0.52
948356--948408	15	3.5	16	85	10	76	0	13	0	86	0.56
951036--951080	17	2.7	18	80	16	53	33	0	0	66	0.92
952068--952595	280	1.9	280	85	3	731	31	15	19	33	1.93
954272--954329	25	2.3	26	82	17	77	55	0	0	44	0.99
954303--954364	16	3.8	16	78	20	65	58	3	0	38	1.15
954272--954330	13	4.6	13	72	17	52	55	0	0	44	0.99
956447--956471	13	1.9	13	100	0	50	36	0	0	64	0.94
956929--956972	22	2.1	20	87	8	61	54	4	0	40	1.21
957412--957455	13	3.3	12	82	17	52	47	0	0	52	1.00
957386--957506	58	2.1	58	80	6	129	47	0	2	48	1.20
957589--957628	16	2.5	17	80	12	57	47	2	0	50	1.14
957850--957889	4	10.8	4	84	15	59	27	0	0	72	0.85
957848--957889	14	2.9	14	92	3	66	28	0	0	71	0.86
957845--957889	18	2.4	18	92	3	72	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957873--957969	23	4.2	23	72	15	74	39	0	4	56	1.18
961815--961853	13	3.1	12	82	13	51	43	2	0	53	1.14
961869--961938	33	2.1	33	94	0	122	48	2	0	48	1.16
962833--962873	21	1.9	22	85	5	57	39	0	2	58	1.11
963419--963450	2	16.0	2	93	0	55	46	0	3	50	1.17
963592--963621	2	15.0	2	100	0	60	50	0	0	50	1.00
965330--965461	66	2.0	67	83	3	167	44	3	5	46	1.41
965594--965621	2	14.0	2	100	0	56	50	0	0	50	1.00
966166--966401	128	1.9	126	93	1	409	32	16	24	26	1.96
966968--967007	21	2.0	20	90	5	62	72	2	0	25	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16