genome.fa.s324.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold324
Parameters: 2 7 7 80 10 50 1000
Length:  2336777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  13  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1783482--1783522	17	2.4	18	76	12	50	41	2	4	51	1.36
1783675--1783738	21	3.0	21	86	4	85	39	4	0	56	1.20
1784646--1784905	50	5.2	50	92	1	396	32	18	18	30	1.95
1789264--1789417	50	3.1	49	82	5	193	40	15	10	33	1.81
1789265--1789453	50	3.8	50	80	4	148	43	12	9	34	1.75
1789265--1789453	100	1.9	100	80	0	225	43	12	9	34	1.75
1789804--1789881	36	2.2	36	82	8	90	47	0	2	50	1.15
1789861--1789905	22	2.0	22	82	8	54	53	0	4	42	1.21
1793334--1793373	12	3.3	12	85	0	53	45	5	2	47	1.38
1793334--1793363	2	15.0	2	92	0	51	50	3	0	46	1.18
1794951--1795006	25	2.2	26	80	6	69	46	1	1	50	1.22
1795488--1795542	13	4.1	14	73	17	53	61	0	3	34	1.13
1797550--1797580	2	15.5	2	93	0	53	45	0	3	51	1.17
1800802--1800833	16	1.9	17	93	6	57	56	6	6	31	1.49
1800952--1800988	19	2.0	19	89	5	58	48	0	5	45	1.25
1803571--1803604	12	2.8	12	100	0	68	50	8	8	32	1.64
1805125--1805198	32	2.4	32	78	13	84	43	1	2	52	1.23
1805183--1805229	16	3.1	16	77	20	55	31	0	2	65	1.04
1805814--1805853	20	2.0	20	95	0	71	55	2	0	42	1.13
1810373--1810457	21	4.4	21	71	14	76	43	12	1	42	1.50
1811202--1811256	28	2.0	27	82	10	67	56	0	1	41	1.10
1814249--1814278	2	15.0	2	92	0	51	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814964--1815002	13	3.0	13	80	0	51	76	2	20	0	0.90
1815035--1815098	32	2.0	31	85	8	85	34	0	1	64	1.03
1815081--1815144	25	2.5	26	78	16	71	46	0	0	53	1.00
1815158--1815219	23	2.7	23	80	5	72	32	1	1	64	1.13
1818754--1818790	2	18.5	2	88	0	56	45	2	2	48	1.30
1820738--1820787	27	1.9	26	84	8	66	64	2	0	34	1.05
1820893--1820937	21	2.1	21	87	0	63	4	15	0	80	0.87
1821256--1821322	28	2.5	27	83	7	82	29	2	2	64	1.23
1825693--1825727	17	2.0	17	88	5	52	20	5	2	71	1.19
1827182--1827383	97	2.1	97	81	3	237	40	11	20	28	1.87
1829885--1829938	20	2.7	20	85	8	65	33	14	9	42	1.78
1831496--1831545	12	3.8	12	80	19	55	62	2	0	36	1.07
1831731--1831769	20	1.9	21	89	5	62	61	0	2	35	1.10
1832836--1832886	15	3.5	14	78	7	57	56	0	0	43	0.99
1836104--1836139	14	2.6	14	95	0	63	86	0	8	5	0.72
1837819--1837864	22	2.0	22	88	12	67	52	0	8	39	1.33
1838711--1838752	14	2.8	15	78	10	50	54	0	0	45	0.99
1838738--1838784	14	3.4	14	78	0	58	53	2	0	44	1.12
1839434--1839624	39	4.9	39	72	7	129	36	6	18	38	1.77
1841743--1841838	30	3.2	30	72	11	88	37	12	5	44	1.65
1841715--1841849	60	2.3	60	78	1	146	36	13	5	45	1.66
1842940--1842985	23	2.0	23	95	0	83	10	8	30	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1844870--1844899	5	6.0	5	92	0	51	43	0	0	56	0.99
1844871--1844903	10	3.3	10	91	0	57	45	0	0	54	0.99
1847487--1847566	35	2.3	35	89	4	119	57	5	3	33	1.38
1847547--1847623	7	10.7	7	75	18	61	51	1	2	44	1.23
1847547--1847626	6	12.3	6	73	16	54	50	1	2	46	1.23
1847547--1847626	13	6.2	13	71	12	58	50	1	2	46	1.23
1849238--1849282	22	2.1	22	83	4	56	37	8	13	40	1.76
1849961--1850002	16	2.6	16	92	0	66	40	4	2	52	1.35
1850067--1850124	21	2.7	21	81	13	64	55	0	0	44	0.99
1850400--1850467	24	2.8	24	78	8	75	29	0	5	64	1.17
1852102--1852132	15	2.1	15	93	0	53	19	9	19	51	1.74
1854073--1854106	18	1.9	18	88	5	52	20	17	20	41	1.91
1862622--1862652	15	2.1	15	93	0	53	48	16	22	12	1.80
1864722--1864747	13	2.0	13	100	0	52	30	15	15	38	1.88
1864870--1864912	20	2.2	19	84	16	52	30	20	4	44	1.72
1867289--1867341	19	2.7	20	85	8	72	43	15	13	28	1.84
1871172--1871198	2	13.5	2	100	0	54	51	0	0	48	1.00
1872786--1872828	2	21.5	2	95	0	77	46	0	2	51	1.13
1873279--1873322	21	2.2	20	83	4	52	13	0	4	81	0.83
1877406--1877537	64	2.1	63	82	5	158	21	12	21	43	1.86
1878645--1878812	79	2.1	79	84	2	212	33	13	24	29	1.93
1878777--1878843	28	2.4	28	82	0	80	29	22	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1878819--1878969	79	1.9	79	86	2	214	32	11	27	29	1.91
1878908--1879088	51	3.6	50	88	4	247	34	11	23	30	1.90
1878904--1879088	102	1.8	102	88	2	282	34	11	24	30	1.90
1881469--1881520	21	2.6	21	87	6	72	34	15	11	38	1.83
1882348--1883561	55	21.3	55	82	7	1204	25	20	26	27	1.99
1882347--1883538	172	6.9	172	85	6	1375	25	20	26	27	1.99
1885460--1885557	47	2.1	46	96	1	178	52	8	24	15	1.70
1891727--1891776	19	2.6	19	87	9	75	30	8	18	44	1.78
1891831--1891855	13	1.9	13	100	0	50	32	16	16	36	1.90
1891864--1891989	52	2.4	52	95	0	234	36	19	18	26	1.94
1894156--1894202	24	2.0	24	100	0	94	42	23	4	29	1.73
1897518--1897572	2	27.5	2	100	0	110	49	0	0	50	1.00
1897846--1897928	28	2.9	28	68	12	71	27	7	6	59	1.48
1899431--1899464	15	2.3	15	100	0	68	35	11	14	38	1.83
1903678--1903722	2	22.0	2	95	4	81	48	0	2	48	1.13
1904362--1904586	75	3.0	75	96	0	405	38	23	16	22	1.93
1904926--1904987	28	2.2	28	82	5	72	53	0	1	45	1.10
1906035--1906092	12	4.8	12	76	17	57	20	1	5	72	1.13
1907455--1907505	21	2.4	21	90	0	75	52	11	5	29	1.61
1908788--1909005	34	6.5	34	83	5	264	41	26	6	25	1.80
1908786--1909005	101	2.2	101	90	4	345	41	26	6	25	1.80
1908786--1909005	67	3.3	67	83	2	298	41	26	6	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1913071--1913133	19	3.3	19	90	0	90	34	19	17	28	1.94
1913438--1913653	34	6.4	34	82	5	260	41	26	6	25	1.80
1913436--1913653	101	2.2	101	89	4	341	41	27	6	24	1.80
1913436--1913653	67	3.2	67	83	2	294	41	27	6	24	1.80
1914523--1914635	38	3.1	38	85	7	169	46	3	0	49	1.18
1914547--1914600	24	2.3	23	78	15	56	50	3	0	46	1.19
1914527--1914644	35	3.2	38	84	8	161	45	2	0	51	1.14
1915199--1915235	15	2.4	16	78	13	51	13	0	5	81	0.86
1915349--1915385	2	18.5	2	100	0	74	51	0	0	48	1.00
1915488--1915547	17	3.4	17	71	13	57	38	6	6	48	1.56
1916095--1916128	2	17.0	2	93	0	59	50	2	0	47	1.16
1918460--1918623	50	3.3	50	92	3	285	43	14	27	15	1.85
1920187--1920313	53	2.5	50	82	12	150	28	24	14	33	1.94
1920242--1920550	79	3.9	79	94	0	519	27	25	14	32	1.95
1920482--1920629	53	2.9	50	78	10	163	26	22	13	37	1.92
1927509--1927537	15	1.9	15	100	0	58	27	3	0	68	1.05
1927542--1927597	28	2.0	28	83	10	71	42	3	3	50	1.37
1930079--1930154	31	2.5	31	91	2	118	26	18	11	43	1.84
1933102--1933140	2	19.5	2	100	0	78	51	0	0	48	1.00
1933331--1933373	23	2.0	21	86	9	59	51	0	6	41	1.29
1934802--1934851	24	2.1	23	92	3	82	42	0	24	34	1.55
1935527--1935551	10	2.5	10	100	0	50	84	0	8	8	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1941845--1941918	20	3.9	19	86	11	100	39	12	16	32	1.85
1942769--1943682	28	32.8	28	80	6	875	23	15	29	31	1.96
1942769--1943682	83	10.9	83	80	6	886	23	15	29	31	1.96
1942769--1944064	55	23.3	56	79	8	819	25	15	29	29	1.96
1942840--1944364	28	55.2	28	78	7	781	27	14	29	28	1.95
1943644--1944361	55	13.1	54	83	4	713	31	13	29	25	1.94
1952746--1952822	20	3.9	19	85	8	109	40	12	15	31	1.85
1954922--1954955	17	2.0	17	94	0	59	55	0	0	44	0.99
1959473--1959539	35	1.9	35	90	0	107	23	11	7	56	1.60
1960629--1960677	2	24.5	2	100	0	98	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16