genome.fa.s324.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold324
Parameters: 2 7 7 80 10 50 1000
Length:  2336777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2264241--2264279	19	2.1	18	95	4	69	69	5	0	25	1.09
2266287--2266328	11	3.9	11	81	6	59	30	2	0	66	1.04
2266288--2266328	21	1.9	22	90	5	66	31	2	0	65	1.05
2266457--2266534	41	1.9	40	87	7	113	28	6	24	41	1.79
2267785--2267829	11	4.3	10	86	8	54	11	8	0	80	0.92
2267787--2267828	21	2.0	22	85	4	59	11	9	0	78	0.96
2267966--2268003	16	2.4	16	90	0	58	50	0	2	47	1.15
2267962--2268014	26	2.0	27	85	10	74	52	0	1	45	1.11
2268584--2268610	14	1.9	14	100	0	54	40	0	0	59	0.98
2268954--2269003	20	2.5	20	74	9	57	44	0	0	56	0.99
2272930--2272963	16	2.1	16	88	0	50	61	11	5	20	1.50
2275104--2275172	33	2.1	34	83	2	86	46	7	5	40	1.55
2276841--2276885	22	2.0	22	83	8	56	64	0	0	35	0.94
2276829--2276890	18	3.5	18	80	8	74	58	0	1	40	1.08
2276847--2276890	22	2.0	22	86	8	63	56	0	2	40	1.11
2277332--2277373	21	2.0	21	100	0	84	33	28	4	33	1.78
2277723--2277807	25	3.4	24	76	15	75	37	0	1	61	1.04
2277772--2277815	23	1.9	23	86	9	63	45	2	0	52	1.13
2280458--2280540	37	2.2	37	97	2	157	48	6	4	40	1.49
2280724--2280767	3	14.7	3	100	0	88	65	0	0	34	0.93
2281399--2281428	15	2.1	15	93	6	53	80	0	13	6	0.91
2281598--2281653	23	2.4	24	82	14	64	41	1	1	55	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2282543--2282581	20	2.0	20	85	10	53	69	2	0	28	1.02
2282539--2282598	18	3.3	17	78	15	50	70	5	0	25	1.08
2282975--2283031	17	3.5	17	79	16	57	42	0	1	56	1.10
2283720--2283756	15	2.4	16	82	13	51	75	0	0	24	0.80
2283948--2284000	23	2.3	23	87	6	72	67	0	0	32	0.91
2283948--2283999	11	4.5	11	83	13	61	69	0	0	30	0.89
2285753--2285785	9	3.7	9	91	0	57	45	33	9	12	1.73
2287056--2287094	14	2.8	14	88	7	53	0	12	2	84	0.72
2287054--2287096	13	3.2	13	86	3	59	0	11	6	81	0.87
2289112--2289154	19	2.3	19	84	8	52	51	4	0	44	1.22
2289151--2289235	17	4.8	17	72	18	59	47	2	0	50	1.14
2290779--2290848	22	2.9	25	77	18	76	37	0	2	60	1.12
2290794--2290849	23	2.5	22	83	16	71	41	0	1	57	1.09
2290814--2290867	26	2.0	28	85	7	76	42	0	5	51	1.25
2291106--2291147	19	2.2	20	87	12	61	45	0	0	54	0.99
2292421--2292460	16	2.5	16	87	0	53	30	2	17	50	1.59
2292466--2292500	17	2.1	17	89	5	54	31	5	8	54	1.54
2294398--2294484	12	7.2	11	74	17	52	67	4	1	26	1.17
2294245--2294562	156	2.0	157	85	7	423	60	6	4	28	1.41
2294725--2294749	13	1.9	13	100	0	50	16	32	4	48	1.64
2297940--2297968	2	14.5	2	100	0	58	51	0	0	48	1.00
2299196--2299258	28	2.2	31	83	11	80	68	0	1	30	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2299209--2299258	15	3.3	15	82	2	64	66	0	0	34	0.92
2299216--2299275	16	3.8	16	82	8	61	56	3	0	40	1.16
2299385--2299425	14	2.6	17	78	21	54	51	0	7	41	1.30
2299962--2300060	5	19.4	5	68	13	51	70	0	25	4	1.04
2300039--2300097	29	2.0	29	100	0	118	66	3	20	10	1.36
2300859--2300884	13	2.0	13	100	0	52	53	7	0	38	1.30
2301093--2301123	16	1.9	16	93	0	53	45	3	3	48	1.34
2301191--2301227	18	2.1	18	89	0	56	48	2	10	37	1.52
2301497--2301542	23	2.0	24	91	4	76	32	2	4	60	1.28
2302500--2302574	20	3.8	20	67	19	50	46	0	0	53	1.00
2307576--2307650	20	3.8	20	78	0	87	34	13	12	40	1.81
2307576--2307653	40	2.0	39	87	2	111	34	12	12	39	1.82
2308561--2308617	23	2.5	23	97	0	105	19	10	7	63	1.49
2316122--2316349	27	8.2	27	87	5	242	23	33	13	30	1.92
2316160--2317871	28	59.9	28	90	2	2230	28	32	16	22	1.96
2316094--2317871	57	31.1	57	88	3	2254	27	32	16	22	1.96
2318385--2318464	20	4.0	20	75	1	88	33	13	11	41	1.80
2319370--2319424	22	2.5	22	100	0	110	18	10	9	61	1.54
2319370--2319431	22	2.9	21	90	4	63	20	11	9	58	1.61
2322101--2322144	19	2.4	19	80	3	54	40	2	0	56	1.11
2322365--2322396	17	1.9	16	93	6	55	43	0	0	56	0.99
2322721--2322753	17	1.9	17	93	0	57	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2326465--2326493	12	2.3	13	94	5	51	48	0	6	44	1.29
2328613--2328649	14	2.5	15	91	4	58	24	2	0	72	0.97
2329063--2329092	15	2.0	15	93	0	51	43	0	0	56	0.99
2329063--2329100	20	1.9	20	88	0	58	47	0	0	52	1.00
2331861--2331915	22	2.5	22	100	0	110	61	9	10	18	1.54
2332829--2332903	20	3.8	20	80	3	80	40	12	13	34	1.81
2332826--2332903	40	2.0	39	87	2	111	39	12	12	34	1.82
2333511--2334154	57	11.2	57	88	3	929	21	16	32	29	1.96
2333465--2334156	29	24.0	29	87	5	924	21	17	31	28	1.96
2333511--2334157	257	2.5	254	90	3	685	21	16	32	29	1.95
2336676--2336725	13	3.8	13	94	5	84	94	4	2	0	0.38
2336676--2336726	1	51.0	1	88	0	75	94	3	1	0	0.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!