genome.fa.s324.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold324
Parameters: 2 7 7 80 10 50 1000
Length:  2336777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163776--163821	23	2.0	23	82	0	56	8	6	73	10	1.23
170526--170576	11	4.8	11	76	7	52	50	0	0	49	1.00
170528--170590	31	2.0	31	81	6	74	50	0	0	49	1.00
170601--170640	21	2.0	20	85	5	53	52	0	0	47	1.00
170971--170996	2	13.0	2	100	0	52	50	0	0	50	1.00
171682--171723	16	2.5	17	85	14	52	23	2	2	71	1.10
172149--172195	23	2.0	24	84	12	62	46	6	0	46	1.28
178670--178699	3	10.0	3	100	0	60	66	0	0	33	0.92
178853--178896	19	2.2	20	84	11	56	50	0	0	50	1.00
178970--179059	20	4.1	21	76	17	85	55	1	0	43	1.07
179285--179330	19	2.5	18	85	3	56	65	0	0	34	0.93
179680--179737	26	2.2	27	84	3	73	46	1	0	51	1.11
179791--179839	2	25.0	2	87	4	73	48	4	0	46	1.20
180718--180771	21	2.5	22	77	17	60	50	7	0	42	1.30
181875--181903	3	9.7	3	100	0	58	68	0	0	31	0.89
187602--187681	39	2.1	39	95	0	142	53	17	11	17	1.72
189167--189206	21	1.9	21	90	10	64	30	0	2	67	1.04
192151--192199	5	9.8	5	88	0	53	71	0	26	2	0.97
193532--193591	18	3.3	18	80	15	54	63	1	3	31	1.20
203367--203392	5	5.2	5	100	0	52	19	57	0	23	1.40
203561--203591	12	2.6	12	100	0	62	32	32	9	25	1.88
204473--204567	27	3.8	25	76	17	81	45	1	1	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204504--204564	31	1.9	32	90	3	97	45	0	0	54	1.00
204499--204567	17	4.0	18	73	21	67	46	0	0	53	1.00
206016--206044	2	14.5	2	100	0	58	48	0	0	51	1.00
206252--206276	2	12.5	2	100	0	50	52	0	0	48	1.00
206276--206304	2	14.5	2	100	0	58	51	0	48	0	1.00
206426--206458	2	16.5	2	93	0	57	54	0	0	45	0.99
207798--207845	23	2.1	23	88	7	71	41	2	4	52	1.32
209219--209251	2	16.5	2	100	0	66	51	0	0	48	1.00
210458--210544	21	4.2	21	83	2	115	58	3	1	36	1.22
211256--211345	25	3.5	26	71	18	82	50	1	1	47	1.15
216869--216908	19	2.0	20	90	4	64	50	0	0	50	1.00
219287--219314	2	14.0	2	100	0	56	50	0	0	50	1.00
220131--220164	3	11.7	3	93	6	61	67	0	0	32	0.91
220893--220946	2	27.0	2	100	0	108	50	0	0	50	1.00
221715--221741	1	27.0	1	100	0	54	0	0	0	100	0.00
222239--222273	17	2.1	18	89	10	56	71	0	0	28	0.86
222692--222716	3	8.3	3	100	0	50	68	0	0	32	0.90
223744--223781	2	19.0	2	100	0	76	50	0	0	50	1.00
223867--223921	16	3.5	16	80	14	53	40	0	1	58	1.09
223863--223921	5	11.6	5	77	15	59	38	0	1	59	1.08
223863--223925	21	3.1	21	82	15	71	41	0	1	57	1.08
223935--223983	18	2.8	17	84	9	62	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225083--225129	24	2.0	24	88	12	71	59	0	0	40	0.97
226497--226538	22	2.0	21	85	4	57	52	0	0	47	1.00
227286--227327	21	2.0	22	85	4	59	54	2	9	33	1.46
242787--242838	21	2.5	20	77	17	54	42	3	1	51	1.31
242903--242952	22	2.3	22	79	6	57	48	0	0	52	1.00
244004--244035	15	2.2	15	94	5	57	43	0	0	56	0.99
244089--244151	11	4.8	12	77	19	56	42	3	0	53	1.16
244143--244184	20	2.0	21	86	4	59	50	0	0	50	1.00
244806--244890	8	10.4	8	68	17	50	40	1	1	57	1.14
244778--244931	52	3.0	52	94	0	265	41	2	1	53	1.25
244823--244919	23	3.4	30	69	24	93	42	3	2	52	1.28
246139--246184	21	2.1	21	84	4	56	54	2	8	34	1.43
248148--248196	23	2.0	25	84	7	66	26	10	2	61	1.39
248440--248481	8	5.2	8	77	11	50	78	0	2	19	0.86
248428--248478	24	2.1	25	92	3	86	72	0	5	21	1.05
248871--248928	25	2.3	26	78	3	73	65	1	0	32	1.03
248871--248928	18	3.5	15	78	17	53	65	1	0	32	1.03
248999--249056	27	2.1	29	87	6	84	77	1	20	0	0.86
248999--249056	20	2.9	19	85	12	66	77	1	20	0	0.86
249072--249134	22	2.8	23	81	13	78	31	0	3	65	1.09
249096--249162	33	2.2	34	77	20	76	29	0	2	67	1.06
249120--249163	16	3.0	16	71	25	51	29	0	2	68	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250302--250335	18	1.9	17	88	5	50	61	0	5	32	1.20
250382--250422	20	2.0	20	85	4	55	46	7	0	46	1.30
250378--250428	22	2.3	23	74	16	54	50	5	0	43	1.26
250475--250561	42	2.1	42	97	0	165	37	11	1	49	1.47
254740--254787	2	24.0	2	95	0	78	50	4	0	45	1.21
266320--266367	25	1.9	25	95	0	87	56	10	0	33	1.34
274938--275006	22	3.0	23	70	12	70	55	0	1	43	1.08
275773--275844	19	3.8	19	78	10	58	36	0	2	61	1.11
277727--277759	17	2.0	17	88	5	50	42	0	6	51	1.26
277763--277818	29	1.9	29	92	0	94	50	1	3	44	1.29
277763--277847	29	2.8	29	84	10	82	52	2	3	41	1.31
284201--284233	2	16.5	2	100	0	66	48	0	0	51	1.00
286805--286835	15	2.1	15	100	0	62	32	25	22	19	1.97
288389--288465	34	2.2	34	84	6	102	45	0	0	54	0.99
288763--288793	12	2.7	12	95	5	55	67	0	0	32	0.91
293562--293607	2	24.0	2	78	8	51	50	2	0	47	1.13
295428--295465	3	12.7	3	94	0	67	34	2	0	63	1.09
299197--299241	14	2.9	16	83	9	58	48	4	2	44	1.35
299533--299572	21	2.0	21	85	5	55	47	2	0	50	1.14
300126--300178	24	2.1	27	83	16	69	58	0	7	33	1.26
301372--301556	34	5.5	34	85	0	246	27	7	25	40	1.82
301863--301925	19	3.3	19	90	0	90	28	17	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305991--306175	34	5.5	34	88	0	264	25	7	26	40	1.82
306735--306771	3	12.3	3	100	0	74	0	32	0	67	0.91
306909--306941	2	16.5	2	93	0	57	48	3	0	48	1.17
311798--311836	20	2.0	20	85	10	53	46	0	0	53	1.00
312544--312593	23	2.2	23	85	0	64	52	0	0	48	1.00
315206--315230	2	12.5	2	100	0	50	52	0	48	0	1.00
317278--317326	22	2.2	23	78	10	57	32	0	0	67	0.91
317384--317421	13	3.0	13	81	18	53	52	5	0	42	1.24
318572--318608	18	2.1	18	90	10	58	43	0	2	54	1.14
318849--318873	12	2.1	12	100	0	50	16	0	0	84	0.63
319300--319349	24	2.1	24	81	7	57	54	0	4	42	1.19
319307--319354	25	2.0	24	84	12	62	54	0	0	45	0.99
319389--319413	11	2.3	11	100	0	50	52	0	0	48	1.00
319740--319781	5	8.8	5	84	10	52	57	0	42	0	0.99
319822--319847	2	13.0	2	100	0	52	50	0	0	50	1.00
328355--328400	20	2.4	19	82	10	58	43	0	0	56	0.99
333618--333648	16	1.9	16	93	0	53	54	0	0	45	0.99
340125--340224	8	12.2	8	70	19	55	46	1	0	53	1.07
340130--340225	44	2.3	38	79	12	102	44	1	0	54	1.07
340300--340328	5	5.8	5	100	0	58	79	0	0	20	0.74
340749--340812	23	2.8	22	74	9	65	65	7	0	26	1.19
341803--341839	18	2.0	20	89	10	60	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345539--345570	9	3.4	10	83	16	50	62	0	0	37	0.95
346917--346960	22	2.0	22	82	8	54	70	4	4	20	1.23
347162--347204	21	2.0	21	86	4	59	27	2	2	67	1.15
348761--348812	21	2.5	20	75	3	50	51	0	1	46	1.12
354824--354888	23	2.9	23	80	11	64	43	1	1	53	1.19
354790--354901	49	2.3	49	79	4	127	48	0	0	50	1.13
354794--354903	27	4.2	26	71	20	86	46	0	0	51	1.13
354957--354987	16	1.9	16	100	0	62	35	0	0	64	0.94
354953--355074	61	1.9	64	87	9	180	38	1	0	59	1.13
355475--355507	2	16.5	2	100	0	66	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16