genome.fa.s324.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold324
Parameters: 2 7 7 80 10 50 1000
Length:  2336777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359099--359181	34	2.4	35	89	4	123	59	8	3	28	1.44
359834--359866	15	2.2	15	89	10	50	66	0	0	33	0.92
360978--361024	22	2.2	20	85	11	58	57	2	0	40	1.11
361221--361273	23	2.4	23	79	14	58	52	3	0	43	1.19
361223--361273	24	2.2	23	82	3	57	54	3	0	41	1.19
361554--361634	26	3.2	26	75	15	71	49	0	1	49	1.08
361535--361639	32	3.2	32	78	15	83	46	0	0	52	1.07
362130--362180	23	2.1	25	85	7	70	47	0	0	52	1.00
362361--362400	20	2.0	21	95	5	73	55	0	0	45	0.99
362523--362576	16	3.1	17	82	12	65	38	0	0	61	0.96
363068--363095	2	14.0	2	100	0	56	50	0	0	50	1.00
363486--363565	25	3.2	25	71	12	65	41	0	2	56	1.13
363488--363544	23	2.5	23	80	5	62	40	0	3	56	1.17
364225--364250	3	8.7	3	100	0	52	69	0	0	30	0.89
364531--364598	21	3.1	22	74	16	70	47	0	0	52	1.00
364541--364606	22	3.0	21	85	10	89	45	0	0	54	0.99
364684--364739	23	2.4	24	81	3	69	51	0	0	48	1.00
364868--364903	2	18.0	2	94	0	63	0	52	0	47	1.00
365374--365431	3	19.7	3	96	3	109	68	0	31	0	0.89
369417--369446	14	2.1	15	93	6	53	53	0	0	46	1.00
369703--369738	2	18.0	2	100	0	72	50	0	0	50	1.00
374156--374271	22	5.4	20	73	18	65	58	0	0	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374168--374248	15	5.9	14	71	23	57	59	0	1	39	1.05
374181--374252	17	4.5	17	73	18	64	59	0	1	38	1.06
374169--374294	46	2.7	46	78	9	130	57	0	0	41	1.04
374186--374308	23	5.6	22	74	20	80	58	0	1	39	1.08
374451--374503	16	3.3	15	78	10	52	39	1	0	58	1.09
374487--374530	23	2.0	22	86	4	61	47	0	0	52	1.00
375249--375351	38	2.8	38	85	5	122	53	0	4	41	1.22
375610--375637	2	14.0	2	100	0	56	50	0	50	0	1.00
376554--376619	34	2.0	33	82	8	80	59	0	0	40	0.98
376878--376903	2	13.0	2	100	0	52	50	0	0	50	1.00
377519--377559	21	2.0	21	85	0	55	51	2	2	43	1.28
377613--377682	21	3.3	21	85	0	86	54	2	4	38	1.35
377613--377682	10	6.6	11	73	18	51	54	2	4	38	1.35
377645--377734	42	2.2	41	82	9	103	61	6	3	28	1.38
377988--378020	16	2.0	17	88	5	50	48	3	0	48	1.17
385848--385881	12	2.8	13	86	13	54	44	0	0	55	0.99
385867--385911	23	2.0	23	86	8	65	51	2	0	46	1.13
385851--385914	14	4.6	14	76	12	62	45	1	0	53	1.10
388636--388677	20	2.1	21	87	12	63	73	0	0	26	0.83
388636--388680	18	2.5	17	85	7	54	68	0	0	31	0.89
388999--389141	72	2.0	72	82	5	173	33	20	25	19	1.97
390560--390599	19	2.1	19	85	0	53	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390881--390970	27	3.4	26	72	18	87	58	1	0	40	1.05
391796--391830	2	17.5	2	100	0	70	48	0	51	0	1.00
395264--395498	109	2.2	109	96	1	436	26	13	13	47	1.79
401990--402039	27	1.9	27	88	8	77	40	0	0	60	0.97
406584--406621	2	19.0	2	100	0	76	50	0	0	50	1.00
410051--410092	7	6.1	7	88	8	52	2	9	2	85	0.77
415065--415094	6	5.0	6	100	0	60	0	16	33	50	1.46
415065--415103	18	2.2	18	90	0	60	0	17	33	48	1.48
425546--425578	2	17.0	2	93	6	59	48	0	0	51	1.00
427276--427329	23	2.3	24	78	9	58	51	0	1	46	1.11
428204--428234	15	2.1	14	94	5	53	54	0	0	45	0.99
428794--428827	12	2.8	12	90	0	50	0	47	2	50	1.16
430864--430909	21	2.3	22	85	14	64	43	2	6	47	1.41
433170--433213	22	2.0	22	86	8	63	52	2	0	45	1.13
433629--433679	2	25.5	2	100	0	102	49	0	50	0	1.00
434724--434758	2	17.5	2	93	0	61	48	0	51	0	1.00
438651--438679	2	14.5	2	100	0	58	51	0	0	48	1.00
438983--439029	14	3.3	14	75	24	53	36	6	6	51	1.53
439124--439253	31	4.3	31	71	20	96	50	0	1	46	1.16
439274--439341	22	2.9	23	74	10	66	58	5	2	32	1.37
439278--439354	23	3.4	22	72	12	66	59	6	2	31	1.36
440026--440063	20	1.9	20	88	0	58	34	0	10	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440294--440340	21	2.3	21	82	14	62	36	0	2	61	1.08
440294--440346	20	2.6	21	80	14	65	37	0	1	60	1.08
440323--440390	29	2.3	29	80	12	77	47	0	0	52	1.00
440756--440814	21	2.7	22	78	17	68	67	5	0	27	1.11
440761--440821	23	2.5	24	82	12	72	68	4	0	26	1.09
440761--440822	24	2.6	23	82	10	72	67	4	0	27	1.10
440808--440998	10	20.6	10	66	22	64	63	2	0	34	1.10
440808--440998	19	10.3	19	68	20	68	63	2	0	34	1.10
440815--440847	17	1.9	17	93	0	57	63	0	0	36	0.95
440810--440995	27	6.8	27	67	20	84	63	2	0	33	1.11
440760--440986	121	1.9	121	81	9	284	64	3	0	32	1.13
441029--441080	19	2.8	18	75	19	54	26	1	9	61	1.38
441073--441142	17	4.4	16	70	12	63	34	0	4	61	1.16
441127--441178	12	4.6	11	77	11	52	36	1	1	59	1.19
441731--441801	20	3.3	21	70	20	58	40	2	2	53	1.30
447262--447300	2	19.5	2	89	0	60	46	0	5	48	1.24
447417--447465	2	24.0	2	95	4	89	48	0	2	48	1.12
447977--448035	26	2.3	25	85	11	75	57	0	0	42	0.98
448390--448439	26	1.9	26	84	8	66	14	6	0	80	0.90
449531--449563	16	2.0	17	88	5	50	42	12	6	39	1.67
450202--450233	2	16.0	2	93	0	55	46	0	3	50	1.17
450711--450758	17	2.8	17	81	12	53	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453378--453447	34	2.1	34	86	5	97	37	11	8	42	1.72
462327--462371	2	24.5	2	78	17	53	55	0	0	44	0.99
468218--468296	27	2.8	28	86	7	99	39	2	1	56	1.21
468726--468758	16	1.9	18	88	11	52	39	3	0	57	1.14
471806--471891	43	2.0	43	93	0	145	24	16	12	46	1.82
473862--473886	13	1.9	13	100	0	50	0	8	0	92	0.40
473862--473890	14	2.0	15	93	6	51	0	10	0	89	0.48
474520--474575	16	3.5	15	78	9	58	41	0	3	55	1.17
474506--474566	15	4.0	15	77	8	52	36	0	3	60	1.13
474982--475073	11	8.7	11	78	13	88	64	0	0	35	0.94
474983--475076	32	2.9	32	68	24	81	63	0	0	36	0.94
474986--475078	24	3.8	24	79	11	91	62	0	0	37	0.96
479059--479093	2	17.5	2	93	0	61	51	2	45	0	1.16
480630--480660	2	15.5	2	100	0	62	48	0	51	0	1.00
488030--488069	20	1.9	20	90	10	62	50	0	0	50	1.00
488650--488699	16	2.9	18	77	19	61	38	0	0	62	0.96
488677--488747	35	1.9	34	83	13	88	53	4	1	40	1.29
488678--488747	36	2.0	35	86	8	97	54	4	1	40	1.29
488859--488909	21	2.5	20	72	12	50	52	3	0	43	1.19
489339--489372	8	4.4	8	88	7	52	55	0	0	44	0.99
489340--489371	15	2.1	15	94	0	55	59	0	0	40	0.97
489825--489902	31	2.4	34	79	16	94	55	1	0	43	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489885--489934	17	2.9	17	75	0	55	64	0	0	36	0.94
489849--489939	30	3.0	29	73	12	76	58	0	0	41	0.98
489849--489944	31	3.1	30	72	14	79	56	0	0	43	0.99
490775--490827	23	2.3	24	77	9	65	45	0	0	54	0.99
491130--491164	16	2.1	17	89	5	54	91	2	5	0	0.50
495012--495040	2	14.5	2	100	0	58	51	0	48	0	1.00
495562--495604	21	2.1	21	87	8	63	46	0	0	53	1.00
495759--495801	21	2.0	21	100	0	86	48	9	9	32	1.67
499122--499163	15	2.7	15	82	17	59	35	0	0	64	0.94
499589--499623	18	1.9	18	88	0	52	42	2	0	54	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16