genome.fa.s326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold326
Parameters: 2 7 7 80 10 50 1000
Length:  1352760

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3178--3235	29	2.0	29	86	0	80	46	1	3	48	1.29
5549--5791	134	1.8	134	80	7	296	24	22	15	37	1.93
6758--6785	2	14.0	2	100	0	56	50	0	0	50	1.00
7120--7151	3	10.7	3	100	0	64	31	0	0	68	0.90
8741--8772	15	2.2	15	94	5	57	18	3	31	46	1.65
15655--15724	10	6.8	10	75	12	70	22	25	10	41	1.85
15673--15785	22	5.1	22	75	12	115	25	20	12	41	1.87
15655--15746	42	2.2	42	98	0	175	23	23	10	41	1.86
16442--16495	20	2.7	20	88	2	81	31	12	11	44	1.78
19528--19618	28	3.3	28	72	17	91	27	16	34	21	1.95
19536--19653	26	4.5	26	70	17	91	29	14	34	21	1.93
19520--19652	54	2.5	53	89	4	205	27	14	36	22	1.93
19620--20008	80	4.9	79	74	10	303	32	8	29	29	1.87
19628--19814	79	2.4	79	80	2	196	31	8	31	29	1.86
24814--24885	20	3.5	20	88	3	90	34	16	9	38	1.82
24928--24978	21	2.4	21	86	0	75	39	15	21	23	1.92
30284--30337	20	2.7	20	76	2	54	35	14	9	40	1.78
31253--31338	19	4.7	19	72	20	76	62	1	1	34	1.10
31305--31373	18	3.9	19	75	21	69	56	0	0	43	0.99
31266--31373	8	12.5	8	70	26	53	59	0	0	38	1.10
37450--37493	16	2.8	16	78	0	52	29	0	11	59	1.32
40343--40373	15	2.1	15	93	0	53	16	3	0	80	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47014--47046	2	16.5	2	93	0	57	51	3	0	45	1.16
48215--48248	18	1.9	17	88	5	50	14	2	2	79	0.97
50406--50448	20	2.1	20	82	4	50	53	0	2	44	1.13
55029--55093	19	3.8	18	71	24	68	32	13	16	36	1.89
55031--55101	32	2.2	32	94	0	124	32	14	18	35	1.90
55146--55170	13	1.9	13	100	0	50	32	16	16	36	1.90
58529--58732	76	2.6	78	80	5	218	28	16	29	25	1.96
58684--58755	28	2.6	28	88	0	99	23	19	34	22	1.96
58744--58913	52	3.3	50	79	11	182	32	12	24	29	1.93
58887--58968	27	3.0	28	82	10	98	26	21	29	21	1.99
61330--61355	13	2.0	13	100	0	52	38	15	15	30	1.88
61309--61375	33	2.0	33	88	0	98	43	16	14	25	1.86
61395--61462	19	3.9	18	76	23	83	38	14	11	35	1.83
61417--61441	13	1.9	13	100	0	50	32	16	16	36	1.90
61398--61460	32	2.0	32	96	0	117	36	15	12	34	1.86
61518--61574	21	2.7	21	97	0	105	36	19	10	33	1.86
61582--61617	18	2.0	18	100	0	72	16	5	0	77	0.94
62180--64177	55	36.3	54	92	4	3076	20	20	30	28	1.97
63959--64100	28	5.1	28	61	19	73	23	19	27	28	1.99
64043--64130	26	3.3	26	66	19	72	21	18	30	29	1.97
65159--65224	1	66.0	1	80	0	69	0	4	6	89	0.59
65160--65225	26	2.5	26	85	0	87	0	4	7	87	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65159--65225	20	3.5	19	83	6	82	0	4	7	88	0.64
77641--77844	76	2.6	78	80	5	218	28	16	29	25	1.96
77796--77867	28	2.6	28	88	0	99	23	19	34	22	1.96
77856--78025	52	3.3	50	77	11	173	32	12	24	30	1.92
77999--78080	27	3.0	28	82	10	98	26	21	29	21	1.99
80442--80467	13	2.0	13	100	0	52	38	15	15	30	1.88
80421--80487	33	2.0	33	85	0	89	43	14	14	26	1.85
80507--80574	19	3.9	18	75	23	74	39	14	10	35	1.80
80529--80553	13	1.9	13	100	0	50	32	16	16	36	1.90
80510--80572	32	2.0	32	93	0	108	38	15	11	34	1.83
80630--80686	21	2.7	21	97	0	105	36	19	10	33	1.86
80688--80729	20	2.1	20	100	0	84	19	4	0	76	0.96
81956--82153	29	6.8	29	69	20	119	26	12	14	46	1.80
81900--82403	58	8.7	58	74	7	285	27	10	13	48	1.76
84220--84269	26	1.9	26	84	8	66	56	0	0	44	0.99
84473--84538	34	1.9	35	81	9	82	43	3	0	53	1.16
84807--84833	2	13.5	2	100	0	54	51	0	0	48	1.00
85703--85759	20	2.8	20	81	5	71	52	0	8	38	1.33
86673--86707	12	2.8	12	91	4	52	57	8	0	34	1.29
87283--87311	3	9.7	3	100	0	58	0	34	0	65	0.93
87423--87467	14	2.9	16	78	18	58	33	0	0	66	0.92
87662--87703	2	22.0	2	85	9	61	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89162--89215	20	2.8	20	73	26	55	48	0	0	51	1.00
89162--89223	19	3.2	20	75	13	67	46	0	0	53	1.00
89254--89304	14	3.4	14	76	17	50	33	0	0	66	0.92
89254--89304	19	2.7	18	85	8	75	33	0	0	66	0.92
91500--91524	12	2.1	12	100	0	50	16	8	8	68	1.38
92428--92468	16	2.5	15	85	14	55	75	0	14	9	1.04
93025--93063	2	19.5	2	100	0	78	48	0	0	51	1.00
93580--93622	17	2.5	17	78	14	52	41	0	0	58	0.98
94942--94986	23	1.9	24	90	4	74	44	0	17	37	1.49
95019--95061	18	2.4	19	80	11	54	27	0	0	72	0.85
103174--103216	12	3.6	12	81	12	52	0	32	0	67	0.91
104949--104995	17	2.7	18	81	15	55	46	0	0	53	1.00
104949--104995	18	2.7	19	81	15	57	46	0	0	53	1.00
104965--105361	61	6.7	60	77	14	271	42	0	2	53	1.19
104954--105100	24	6.2	23	65	24	56	42	0	2	54	1.14
105071--105117	18	2.6	18	83	10	60	44	0	0	55	0.99
104949--105378	57	7.2	60	80	12	487	43	0	2	53	1.18
105078--105178	18	5.2	18	67	30	50	44	0	2	51	1.23
104946--105378	117	3.7	117	86	5	545	42	0	2	54	1.17
105027--105420	61	6.6	58	80	11	360	43	1	2	53	1.19
105585--105623	13	3.0	13	92	0	60	46	2	0	51	1.14
105587--105642	13	4.4	13	81	2	51	50	1	0	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105701--105742	16	2.6	16	71	14	50	42	7	0	50	1.30
105720--105777	24	2.6	22	76	10	57	46	1	0	51	1.11
107218--107263	16	2.8	17	83	6	60	52	2	0	45	1.13
108422--108489	22	3.1	22	78	15	63	51	0	0	48	1.00
108478--108519	21	2.0	22	90	4	68	52	2	0	45	1.13
111900--111934	2	18.0	2	94	5	63	0	48	0	51	1.00
112674--112745	25	2.9	24	80	13	83	62	0	4	33	1.14
112818--112858	18	2.2	20	86	8	59	65	2	0	31	1.05
114532--114572	2	20.5	2	100	0	82	48	0	0	51	1.00
114618--114644	3	9.0	3	100	0	54	33	0	0	66	0.92
115497--115534	2	19.0	2	100	0	76	0	50	0	50	1.00
115790--115827	2	19.0	2	100	0	76	50	0	50	0	1.00
123006--123033	14	2.0	14	100	0	56	28	0	35	35	1.58
124346--124456	34	3.3	34	90	0	186	36	39	1	21	1.64
140230--140256	13	2.1	13	100	0	54	29	14	14	40	1.86
140211--140313	38	3.0	32	80	16	116	31	15	15	37	1.89
140241--140335	19	4.9	19	94	5	165	32	16	15	34	1.91
145781--145820	13	3.1	13	100	0	80	30	15	15	40	1.87
148313--148364	20	2.7	19	87	3	68	30	15	15	38	1.88
148315--148365	19	2.6	20	87	3	68	31	15	15	37	1.89
148332--148404	20	3.7	19	81	5	76	34	13	16	35	1.88
157254--157279	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157939--158113	87	2.0	87	97	1	334	37	20	5	37	1.75
159422--159464	20	2.1	20	82	4	50	9	27	44	18	1.80
165012--165051	19	2.1	19	100	0	80	30	30	15	25	1.95
166123--166148	13	2.0	13	100	0	52	30	15	15	38	1.88
167818--167884	24	2.6	25	80	13	66	52	1	2	43	1.25
168014--168055	21	2.0	21	90	0	66	52	2	2	42	1.27
174698--174735	20	1.9	20	88	0	58	34	13	15	36	1.87
174591--174951	175	2.1	168	95	3	650	31	17	15	34	1.92
174958--174982	13	1.9	13	100	0	50	32	16	16	36	1.90
175525--175604	39	2.1	39	87	0	115	37	30	1	31	1.66

Tables:   1   2   3   4   5   6   7   8