genome.fa.s326.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold326
Parameters: 2 7 7 80 10 50 1000
Length:  1352760

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545862--546350	173	2.8	173	80	6	474	30	29	15	24	1.95
546548--546693	52	2.8	52	81	2	141	26	21	15	36	1.93
547246--547286	20	2.1	19	86	4	55	48	9	12	29	1.72
550726--550843	51	2.3	51	89	2	184	40	15	15	28	1.87
550879--550952	20	3.6	20	88	3	94	35	18	8	37	1.81
552574--552600	13	2.1	13	100	0	54	29	14	14	40	1.86
552586--552639	19	2.8	20	86	8	85	31	14	12	40	1.84
552684--552713	13	2.3	13	100	0	60	33	16	13	36	1.88
558116--558171	20	2.8	19	83	5	67	37	16	16	30	1.90
558230--558255	13	2.0	13	100	0	52	38	15	15	30	1.88
560483--560527	21	2.1	21	84	8	56	53	4	20	22	1.63
562331--562361	15	2.1	15	93	0	53	48	16	22	12	1.80
564371--564450	20	3.8	20	72	15	70	28	13	13	43	1.83
564436--564474	13	3.0	13	96	0	69	30	17	15	35	1.91
564595--564641	21	2.3	21	79	20	55	34	19	4	42	1.70
564597--564639	20	2.2	19	84	16	52	32	18	4	44	1.71
566897--566952	20	2.8	19	83	5	67	37	16	16	30	1.90
567011--567036	13	2.0	13	100	0	52	38	15	15	30	1.88
568088--568399	155	2.0	155	90	1	491	37	9	14	38	1.79
568373--568446	35	2.1	36	97	2	141	28	13	16	41	1.86
568907--568949	14	3.1	14	80	12	52	37	0	0	62	0.95
568936--568989	15	3.1	18	69	20	51	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572170--572325	8	18.4	8	66	23	63	38	0	1	58	1.14
572159--572328	6	29.3	6	68	20	80	38	0	1	59	1.12
572159--572289	27	4.6	27	75	14	102	38	0	0	60	1.02
572185--572274	11	8.6	11	74	16	50	42	0	1	56	1.06
573025--573092	15	4.3	16	69	14	52	47	0	2	50	1.16
573077--573123	11	4.5	11	76	10	53	31	0	0	68	0.90
577452--577476	2	12.5	2	100	0	50	48	0	0	52	1.00
579881--579911	15	2.1	15	93	0	53	45	12	16	25	1.83
588470--588701	87	2.7	88	80	6	258	37	12	18	32	1.88
591856--591890	13	2.7	13	100	0	70	28	8	0	62	1.24
592633--592704	36	2.0	36	83	5	92	34	11	9	44	1.73
594090--594143	20	2.7	20	88	11	76	35	18	12	33	1.89
594171--594228	19	3.1	18	83	11	80	32	13	17	36	1.89
601405--601435	12	2.6	12	94	0	53	29	25	0	45	1.54
602999--603052	20	2.7	20	88	11	76	33	18	14	33	1.92
603121--603147	13	2.1	13	100	0	54	40	7	14	37	1.74
604506--604556	25	2.0	25	96	0	93	41	13	21	23	1.89
610702--610764	19	3.7	18	76	24	73	42	15	12	28	1.84
610720--610745	13	2.0	13	100	0	52	38	15	15	30	1.88
610702--610764	32	2.0	32	93	6	110	42	15	12	28	1.84
617038--617063	13	2.0	13	100	0	52	30	15	15	38	1.88
617017--617085	34	2.1	33	88	2	102	33	11	20	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623236--623264	13	2.2	13	100	0	58	27	13	17	41	1.87
625089--625117	15	1.9	15	100	0	58	58	0	13	27	1.36
625147--625209	21	3.2	20	70	21	51	38	3	25	33	1.72
625652--625703	20	2.6	20	96	0	95	32	11	17	38	1.85
625762--625826	33	2.0	32	87	3	94	29	18	13	38	1.89
625792--625848	19	2.9	19	87	10	80	33	17	15	33	1.92
632821--632850	2	15.0	2	100	0	60	50	0	0	50	1.00
633085--633146	32	1.9	32	93	0	106	48	14	4	32	1.65
634858--634908	20	2.6	20	90	3	77	35	19	9	35	1.85
634856--634908	19	2.7	19	88	2	79	33	18	11	35	1.87
643974--643999	13	2.0	13	100	0	52	38	15	15	30	1.88
643952--644019	33	2.1	32	91	8	111	32	16	16	35	1.91
644060--644112	20	2.6	21	82	8	65	28	15	16	39	1.89
644100--644124	13	1.9	13	100	0	50	36	16	16	32	1.90
644914--644965	20	2.6	19	82	8	59	32	17	11	38	1.85
644952--645005	19	2.8	19	77	2	63	31	14	11	42	1.81
653491--653548	20	2.9	20	79	5	64	32	10	17	39	1.83
661632--661704	22	3.6	20	77	19	80	38	0	34	27	1.57
662259--662315	19	2.9	19	81	2	69	31	17	17	33	1.93
662360--662410	13	4.3	13	78	19	58	41	11	15	31	1.83
662449--662503	20	2.8	20	97	0	101	38	10	14	36	1.81
663351--663500	77	1.9	78	81	6	180	30	12	17	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663911--663984	20	3.8	19	85	8	87	32	14	16	36	1.89
667688--667767	33	2.4	33	82	0	115	33	18	15	32	1.92
667928--667952	13	1.9	13	100	0	50	36	16	16	32	1.90
669819--669844	13	2.0	13	100	0	52	46	7	7	38	1.61
671186--671238	21	2.5	21	84	0	61	18	20	0	60	1.36
671199--671242	21	2.1	21	91	0	70	20	18	0	61	1.35
673138--673162	13	1.9	13	100	0	50	32	20	16	32	1.94
673255--673289	10	3.5	10	92	0	52	42	5	25	25	1.77
673323--673347	13	1.9	13	100	0	50	36	16	16	32	1.90
675552--675576	13	1.9	13	100	0	50	32	16	16	36	1.90
675529--675594	33	2.0	33	93	0	114	28	16	18	36	1.93
675667--675692	13	2.0	13	100	0	52	38	15	15	30	1.88
675649--675712	33	2.0	32	87	9	94	40	17	14	28	1.88
681893--681931	13	3.0	13	96	0	69	30	17	15	35	1.91
682431--682474	22	2.0	22	90	0	70	15	38	15	29	1.89
684380--684404	13	1.9	13	100	0	50	32	16	16	36	1.90
684495--684520	13	2.0	13	100	0	52	38	15	15	30	1.88
684477--684540	33	2.0	32	87	9	94	40	17	14	28	1.88
684663--684699	14	2.6	14	100	0	74	43	43	0	13	1.44
686268--686314	23	2.0	23	100	0	94	27	29	17	25	1.97
688301--688346	22	2.1	22	91	0	74	80	6	10	2	0.98
694535--694569	18	2.0	18	88	5	54	57	8	0	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695847--695912	32	2.1	32	88	0	96	28	24	7	39	1.82
697992--698076	21	4.0	21	76	13	68	55	1	23	20	1.50
701299--701385	10	8.3	10	69	18	52	25	24	10	40	1.86
701275--701397	32	3.8	32	95	0	219	26	22	11	39	1.88
702230--702285	20	2.7	21	83	5	78	39	10	17	32	1.84
703138--703163	13	2.0	13	100	0	52	30	15	15	38	1.88
703118--703181	32	2.0	33	90	3	103	28	14	15	42	1.86
705724--705762	13	3.0	13	96	0	69	35	15	17	30	1.91
709676--709720	21	2.1	21	84	8	56	22	20	4	53	1.63
711953--711978	13	2.0	13	100	0	52	30	15	15	38	1.88
711932--711996	32	2.0	34	90	6	107	27	12	15	44	1.82
713208--713273	27	2.4	27	92	0	105	27	37	12	22	1.90
720200--720477	139	2.0	139	97	0	529	37	18	17	26	1.93
721608--721718	51	2.2	51	80	3	125	33	15	22	28	1.94
721761--721893	52	2.6	51	81	3	167	31	9	27	31	1.89
724258--724285	13	2.2	13	100	0	56	39	17	14	28	1.89
724338--724400	19	3.6	19	72	24	66	36	15	12	34	1.86
724330--724402	32	2.3	32	92	0	128	35	16	12	35	1.86
724460--724515	21	2.7	21	97	0	103	35	16	12	35	1.86
730443--730571	52	2.5	52	94	0	240	27	17	18	35	1.94
730649--730734	32	2.7	32	88	0	136	38	16	10	34	1.83
730657--730717	19	3.5	19	70	25	62	37	16	9	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732490--732530	20	2.0	21	90	9	66	41	24	17	17	1.89
747639--747699	21	3.0	21	76	11	63	34	13	14	37	1.85
751484--751541	3	19.3	3	85	7	82	65	1	0	32	1.03
754671--754741	37	1.9	37	97	0	133	45	9	22	22	1.82
760423--760464	5	8.6	5	94	2	50	90	9	0	0	0.45
760423--760464	15	3.0	14	89	6	59	90	9	0	0	0.45
760423--760460	9	4.0	10	93	3	53	92	7	0	0	0.40
763884--763938	5	11.0	5	79	11	51	54	1	1	41	1.21
763884--763931	21	2.3	21	86	10	64	52	2	2	43	1.24
765844--765907	19	3.7	18	76	23	75	32	12	17	37	1.87

Tables:   1   2   3   4   5   6   7   8