genome.fa.s326.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold326
Parameters: 2 7 7 80 10 50 1000
Length:  1352760

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379768--379828	18	3.4	18	68	8	61	37	31	9	21	1.86
379786--379845	18	3.3	18	68	9	59	38	28	13	20	1.90
394465--394522	21	2.8	21	81	5	73	36	15	15	32	1.89
394558--394625	19	3.9	19	76	21	76	36	11	13	38	1.81
394579--394603	13	1.9	13	100	0	50	36	16	16	32	1.90
394560--394622	32	2.0	32	93	0	108	36	12	14	36	1.84
394665--394690	13	2.0	13	100	0	52	30	15	15	38	1.88
394645--394711	33	2.0	33	88	0	98	25	14	16	43	1.86
397166--397238	27	2.6	28	82	2	85	23	34	21	20	1.97
397221--397387	52	3.2	51	81	2	199	31	25	11	32	1.91
397046--397387	51	6.5	51	69	11	190	30	26	11	31	1.91
397373--397454	28	2.9	28	82	7	87	24	32	17	25	1.96
397054--397449	211	1.9	211	87	2	589	29	27	12	30	1.93
401185--401226	15	2.8	15	85	7	50	35	2	2	59	1.23
403920--403945	13	2.0	13	100	0	52	30	15	15	38	1.88
403984--404110	20	6.7	19	75	17	113	29	14	13	42	1.84
404001--404031	13	2.4	13	94	0	53	29	12	16	41	1.85
404012--404111	40	2.5	40	95	0	173	30	15	13	42	1.84
406391--406559	51	3.3	51	81	3	180	29	25	11	33	1.91
406495--406768	79	3.5	79	77	4	291	29	24	13	33	1.93
412917--413121	62	3.3	62	92	4	317	25	25	20	28	1.99
413137--413445	55	5.5	55	87	6	426	28	29	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413246--413331	26	3.2	26	67	15	75	26	30	19	23	1.98
413301--413595	157	1.9	155	86	7	427	26	28	18	26	1.98
413459--413661	61	3.5	60	81	10	242	26	28	20	25	1.99
413710--413953	60	4.0	60	84	6	305	25	27	18	28	1.98
413722--413952	121	1.9	122	85	3	315	26	27	19	25	1.99
413992--414218	61	3.8	61	86	5	318	24	27	18	29	1.98
415221--415266	20	2.3	20	96	0	83	26	13	13	47	1.78
415250--415313	13	5.4	13	77	21	77	28	15	15	40	1.88
415230--415328	33	3.0	33	92	2	164	27	15	15	42	1.86
415263--415352	20	4.8	20	74	20	88	30	15	13	41	1.85
423776--423826	22	2.3	22	89	0	75	9	25	9	54	1.63
424815--424841	13	2.1	13	100	0	54	14	11	37	37	1.82
426925--426957	14	2.3	15	94	5	59	54	0	6	39	1.25
427500--427556	16	3.4	16	72	9	51	54	1	1	42	1.21
433025--433083	15	3.9	15	78	12	66	37	1	3	57	1.25
433012--433083	31	2.3	31	80	4	92	40	1	2	55	1.23
433014--433063	25	2.0	25	84	7	66	40	2	0	58	1.10
436163--436215	20	2.6	21	84	3	72	28	16	15	39	1.89
444852--444876	13	1.9	13	100	0	50	36	16	16	32	1.90
444928--444980	20	2.6	21	84	3	72	28	16	15	39	1.89
444968--444992	13	1.9	13	100	0	50	36	16	16	32	1.90
445512--445546	17	2.1	17	89	10	54	51	14	11	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446413--446529	61	1.9	60	85	1	162	28	7	9	54	1.60
446803--446834	2	16.0	2	100	0	64	50	0	0	50	1.00
446827--447090	78	3.4	78	79	4	221	32	15	15	36	1.89
451696--451792	51	1.9	51	84	0	131	32	22	7	37	1.82
451728--451947	79	2.8	79	79	6	250	25	24	15	34	1.95
451467--451869	130	3.1	129	85	6	535	28	23	12	34	1.92
456158--456210	13	4.5	13	75	22	55	33	16	13	35	1.88
456158--456226	33	2.1	33	91	5	113	34	18	13	33	1.90
456255--456305	20	2.6	20	81	3	59	37	19	13	29	1.90
456834--456906	21	3.4	21	74	10	67	31	30	2	35	1.72
464969--465012	13	3.9	12	75	25	51	34	15	13	36	1.87
464967--465035	33	2.1	33	89	5	104	34	17	13	34	1.88
465064--465119	19	2.9	19	91	2	85	35	17	16	30	1.92
465104--465130	13	2.1	13	100	0	54	40	14	14	29	1.86
474148--474172	11	2.3	11	100	0	50	92	8	0	0	0.40
474148--474182	16	2.2	16	90	10	54	88	8	2	0	0.61
475286--476202	61	15.1	61	83	5	1034	25	25	18	29	1.98
476198--476427	44	5.5	42	73	17	144	20	26	10	42	1.85
476167--476409	81	2.9	82	80	7	256	21	25	11	41	1.87
476278--476427	45	3.5	43	78	10	132	20	25	10	43	1.84
476194--476517	41	7.8	41	71	16	186	20	25	12	42	1.86
476278--476494	82	2.5	85	80	9	237	19	23	11	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477108--477135	13	2.2	13	100	0	56	28	14	14	42	1.84
477056--477183	62	2.0	63	84	1	168	26	16	14	42	1.87
479736--479885	79	1.9	79	86	5	214	27	25	14	33	1.94
479478--479877	130	3.1	130	82	5	477	29	23	12	35	1.91
493215--493254	20	2.0	20	85	0	53	37	10	10	42	1.72
493215--493334	51	2.3	51	81	9	136	31	15	11	41	1.82
495681--495751	27	2.6	27	95	0	133	22	30	19	26	1.98
498707--499062	79	4.5	79	80	5	346	35	12	23	28	1.92
498690--499062	158	2.4	156	79	6	403	35	12	23	27	1.91
501535--501581	21	2.3	21	85	3	60	31	17	10	40	1.83
502273--502670	42	9.5	41	74	13	226	42	10	26	20	1.84
502381--502501	44	2.8	44	81	6	115	40	9	24	24	1.86
502395--502670	44	6.5	43	79	5	222	43	10	25	20	1.83
502450--502696	42	5.9	42	79	8	213	40	12	25	21	1.88
502430--502670	87	2.8	86	79	8	265	43	10	26	20	1.84
502673--503530	62	14.4	62	75	10	632	31	18	24	25	1.98
502705--503051	172	2.0	171	87	3	500	30	18	25	25	1.98
502878--503530	62	10.9	61	81	7	662	32	18	24	24	1.97
502677--503502	238	3.5	232	81	8	890	31	18	24	24	1.98
503161--503329	55	3.0	55	83	8	198	35	18	24	21	1.95
503552--503667	30	3.8	30	76	4	108	36	14	22	26	1.93
503547--503666	61	2.0	60	85	1	159	36	15	22	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504863--504897	10	3.4	10	92	7	61	0	8	11	80	0.92
509040--509112	20	3.6	20	81	3	101	35	13	19	31	1.91
509058--509133	21	3.7	21	80	3	100	42	11	17	28	1.84
509040--509133	41	2.3	41	98	0	179	39	12	18	29	1.88
509172--509197	13	2.0	13	100	0	52	38	15	15	30	1.88
509154--509216	32	2.0	32	87	6	92	41	14	15	28	1.87
509656--509722	37	1.9	35	88	11	102	32	11	25	29	1.92
512725--512749	13	1.9	13	100	0	50	36	16	16	32	1.90
514435--514507	20	3.6	20	81	3	101	35	13	19	31	1.91
514453--514528	21	3.7	21	80	3	100	42	11	17	28	1.84
514435--514528	41	2.3	41	98	0	179	39	12	18	29	1.88
514567--514592	13	2.0	13	100	0	52	38	15	15	30	1.88
514549--514611	32	2.0	32	87	6	92	41	14	15	28	1.87
515051--515117	37	1.9	35	88	11	102	32	11	25	29	1.92
515986--516067	39	2.0	40	88	4	121	58	19	4	17	1.56
516316--516494	98	1.8	99	83	6	238	34	13	25	26	1.94
516415--516774	78	4.6	78	77	8	313	36	11	23	28	1.90
516415--516774	156	2.3	157	79	8	358	36	11	23	28	1.90
519252--519305	20	2.7	20	85	2	72	31	18	11	38	1.86
522419--522745	80	4.1	79	77	11	251	34	13	24	28	1.93
522418--522831	78	5.2	80	78	8	350	33	13	25	28	1.93
524682--525432	377	2.0	378	98	0	1441	26	19	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525579--525688	50	2.2	50	88	0	157	40	19	17	23	1.91
529379--529431	20	2.6	21	84	3	72	28	16	15	39	1.89
529419--529443	13	1.9	13	100	0	50	36	16	16	32	1.90
538162--538214	20	2.6	21	84	3	72	28	16	15	39	1.89
538202--538226	13	1.9	13	100	0	50	36	16	16	32	1.90
545670--545847	28	6.3	28	74	8	119	33	27	15	24	1.95
545670--546385	56	12.7	56	70	11	199	31	29	15	24	1.96
545849--545876	13	2.2	13	100	0	56	25	32	35	7	1.83
545869--546417	28	18.9	28	74	9	368	31	29	15	24	1.95
545901--546417	145	3.6	145	80	5	534	31	29	15	24	1.95

Tables:   1   2   3   4   5   6   7   8