genome.fa.s326.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold326
Parameters: 2 7 7 80 10 50 1000
Length:  1352760

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081161--1081214	20	2.7	19	88	11	74	31	14	18	35	1.91
1082623--1082788	83	2.0	83	97	1	316	36	13	10	40	1.78
1086602--1086655	20	2.7	20	91	5	83	35	14	16	33	1.90
1088246--1088278	15	2.2	15	94	0	57	42	0	27	30	1.56
1096836--1096880	15	3.0	15	76	0	54	42	42	0	15	1.47
1104004--1104076	26	2.8	26	70	15	69	38	17	10	32	1.85
1104087--1105363	28	45.5	28	82	4	1355	28	28	17	25	1.97
1104087--1105363	83	15.2	84	84	4	1371	28	28	17	25	1.97
1105323--1105450	31	4.1	32	80	8	131	31	28	18	21	1.97
1105320--1105450	63	2.1	61	81	5	147	30	27	18	23	1.98
1106473--1106548	31	2.5	30	91	2	116	27	13	11	47	1.77
1107494--1107518	12	2.1	12	100	0	50	32	16	8	44	1.76
1109197--1109308	51	2.2	51	83	3	136	33	12	24	30	1.92
1109465--1109596	52	2.5	53	81	6	162	37	10	24	28	1.88
1111890--1112034	20	6.8	19	72	17	92	40	14	18	26	1.89
1115359--1115789	35	12.3	36	68	11	164	37	9	18	33	1.84
1115344--1115583	105	2.3	105	78	9	240	36	8	18	36	1.82
1115359--1115626	36	7.6	35	72	13	133	36	9	19	35	1.84
1115597--1115770	70	2.5	69	75	7	181	40	10	17	31	1.84
1116332--1116376	16	2.8	16	82	0	54	46	11	15	26	1.79
1117788--1117823	19	1.9	18	88	5	54	0	2	11	86	0.68
1117830--1117876	24	2.0	24	83	8	60	6	12	14	65	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1121100--1121143	22	2.0	23	82	13	56	47	0	11	40	1.39
1121168--1121225	14	4.1	14	80	14	66	41	3	0	55	1.17
1122015--1122058	21	2.2	20	88	8	63	25	9	9	56	1.59
1123906--1123977	28	2.6	29	91	6	121	26	20	30	22	1.98
1123960--1124079	51	2.4	51	94	0	204	30	15	26	28	1.96
1123859--1124234	158	2.4	158	78	8	388	31	13	26	27	1.94
1124117--1124401	153	1.9	154	85	4	407	33	10	25	30	1.89
1124125--1124404	51	5.5	51	85	4	336	34	10	24	31	1.88
1126786--1126827	21	2.0	21	90	0	66	30	21	7	40	1.80
1126844--1126927	13	5.5	13	71	28	60	36	16	13	33	1.87
1126852--1126969	19	6.7	19	71	24	98	36	16	11	35	1.85
1126844--1126948	32	3.3	32	98	0	201	36	17	12	34	1.87
1127724--1127818	42	2.2	42	81	5	102	43	13	25	17	1.86
1127802--1128381	55	10.3	55	82	7	619	25	20	26	27	1.99
1128073--1128155	26	3.1	26	64	16	69	19	21	31	27	1.97
1127802--1128381	226	2.6	220	87	4	775	25	20	26	27	1.99
1141915--1141987	28	2.6	27	86	4	92	28	20	28	21	1.98
1141944--1142147	79	2.6	78	92	1	327	31	17	25	25	1.97
1141868--1142223	186	1.9	185	80	6	407	32	15	25	26	1.95
1142158--1142490	51	6.5	51	90	2	465	33	11	25	30	1.90
1142157--1142490	153	2.2	154	89	2	512	33	11	25	30	1.90
1144849--1144874	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1144861--1144902	21	2.0	21	90	0	66	28	19	9	42	1.82
1144927--1144980	21	2.7	20	77	8	65	35	14	12	37	1.85
1144926--1144987	19	3.2	19	76	13	63	30	12	14	41	1.83
1145018--1145073	21	2.7	21	100	0	112	35	14	14	35	1.86
1148629--1148677	16	3.1	15	82	14	55	85	6	6	2	0.80
1148642--1148668	10	2.7	10	100	0	54	92	7	0	0	0.38
1148994--1149023	11	2.6	12	94	5	53	90	3	6	0	0.56
1149296--1149518	111	2.0	112	89	0	340	31	13	15	39	1.86
1150003--1150194	88	2.2	88	78	4	206	24	16	13	46	1.82
1151053--1151234	64	2.8	63	73	9	159	18	23	12	45	1.83
1150966--1151234	130	2.1	131	80	4	294	19	23	13	44	1.86
1151630--1152262	107	5.9	104	72	7	331	18	21	14	45	1.84
1152058--1152545	213	2.3	212	75	8	479	20	22	14	42	1.88
1152965--1153238	107	2.6	106	81	3	280	18	25	14	41	1.89
1153188--1153487	106	2.8	106	80	4	293	21	21	12	44	1.85
1153004--1153409	107	3.8	106	81	4	388	19	23	13	43	1.87
1153141--1153487	106	3.3	106	79	6	283	21	22	12	43	1.85
1153509--1153619	41	2.7	41	83	2	125	22	21	13	42	1.88
1153706--1153863	81	1.9	82	82	6	196	25	24	12	37	1.90
1153677--1153895	41	5.4	41	73	10	173	23	24	11	40	1.88
1155179--1155221	22	1.9	23	85	4	61	48	2	6	41	1.43
1155399--1155438	8	5.0	8	81	0	53	70	5	0	25	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1157633--1157713	39	2.0	40	85	2	110	35	7	24	32	1.83
1158338--1158363	13	2.0	13	100	0	52	38	15	15	30	1.88
1158320--1158383	32	2.0	33	87	3	94	42	14	14	29	1.84
1159609--1159643	15	2.3	15	95	0	61	42	0	28	28	1.56
1160962--1161045	40	2.1	40	100	0	168	35	9	15	39	1.80
1166749--1166801	20	2.7	20	91	2	81	32	13	15	39	1.85
1166830--1166883	20	2.7	19	88	11	74	37	14	14	33	1.88
1167715--1167872	51	3.1	49	83	5	183	30	15	12	41	1.84
1167788--1167905	51	2.3	52	82	7	143	33	18	11	37	1.86
1174200--1174275	16	4.8	16	83	0	89	43	34	13	9	1.75
1174203--1174275	32	2.3	32	88	4	103	45	32	12	9	1.74
1174784--1174850	16	4.2	16	88	0	71	50	32	7	8	1.62
1174773--1174846	32	2.3	32	76	0	76	44	35	9	10	1.72
1174965--1175308	152	2.3	152	80	4	376	40	11	10	37	1.76
1176958--1177016	31	1.9	31	89	3	93	38	18	16	25	1.92
1183311--1183466	78	2.0	77	92	3	260	57	1	12	28	1.43
1191384--1191412	2	14.5	2	100	0	58	51	0	0	48	1.00
1193184--1193230	3	16.3	3	91	8	80	34	0	0	65	0.93
1194862--1194898	18	2.1	18	100	0	74	5	37	5	51	1.48
1196022--1196092	29	2.5	28	75	6	70	69	5	7	18	1.32
1196027--1196082	29	2.0	29	85	3	78	67	7	7	17	1.37
1197230--1197652	50	8.4	51	77	16	384	53	4	2	39	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197230--1197652	102	4.2	102	79	12	414	53	4	2	39	1.38
1197548--1197768	42	5.1	42	70	19	134	52	6	3	37	1.44
1197533--1197783	128	2.0	126	81	8	294	54	5	3	36	1.40
1197384--1197648	95	2.7	93	83	11	259	53	4	2	38	1.36
1197710--1197833	49	2.5	51	83	10	141	55	4	2	37	1.32
1198384--1198454	37	1.9	37	85	5	99	21	4	4	70	1.22
1201608--1201687	25	3.2	25	82	3	90	33	0	1	65	1.01
1201608--1201688	10	7.5	11	75	14	62	34	0	1	64	1.02
1201608--1201686	5	15.8	5	72	15	56	34	0	1	64	1.02
1202987--1203046	26	2.3	27	82	5	79	46	1	1	50	1.21
1203041--1203087	19	2.5	20	86	10	64	46	0	2	51	1.13
1203041--1203096	18	3.3	17	81	16	55	44	0	1	53	1.11
1203697--1203747	25	1.9	28	84	11	72	68	13	0	17	1.21
1203853--1203935	23	3.7	23	71	12	73	66	6	4	22	1.34
1203848--1203901	22	2.4	22	81	9	65	66	7	3	22	1.33
1203853--1203935	11	7.3	12	67	15	52	66	6	4	22	1.34
1204250--1204340	42	2.2	41	82	2	119	28	16	15	39	1.89
1205172--1205201	16	1.9	15	93	6	51	53	0	16	30	1.44
1205389--1205430	8	5.0	8	83	13	50	83	2	2	11	0.84
1211105--1211181	20	3.8	20	81	6	84	44	12	11	31	1.79
1212512--1212577	22	3.1	21	69	22	57	40	1	0	57	1.08
1212521--1212558	16	2.3	17	81	9	51	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1213463--1213509	6	8.0	6	88	2	51	38	17	0	44	1.48
1215222--1215274	20	2.7	20	94	5	90	32	18	13	35	1.90
1215324--1215396	20	3.7	20	100	0	146	43	15	15	26	1.85
1215304--1215415	40	2.8	39	80	10	136	38	14	18	28	1.90
1217696--1217743	21	2.4	19	80	19	53	45	4	16	33	1.67
1224113--1224168	19	2.9	19	84	7	69	35	12	17	33	1.88
1224153--1224184	13	2.5	13	100	0	64	37	12	15	34	1.85
1224134--1224198	32	2.0	33	87	3	96	38	13	15	32	1.87
1230518--1230560	15	2.9	15	75	0	50	74	2	18	4	1.10
1233571--1233797	113	2.0	114	87	0	330	47	9	9	33	1.68

Tables:   1   2   3   4   5   6   7   8