genome.fa.s326.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold326
Parameters: 2 7 7 80 10 50 1000
Length:  1352760

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1235395--1235978	156	3.8	153	78	10	518	26	14	17	42	1.87
1235395--1235978	310	1.9	307	78	8	639	26	14	17	42	1.87
1246671--1246720	21	2.3	21	80	10	57	56	4	18	22	1.58
1250569--1250607	13	3.0	13	100	0	78	30	15	15	38	1.88
1259308--1259370	32	2.0	32	90	0	99	50	0	0	49	1.00
1259318--1259425	18	5.9	19	70	18	70	60	0	0	39	0.97
1259346--1259397	22	2.3	24	75	21	58	63	0	0	36	0.95
1259361--1259409	22	2.2	22	78	7	55	65	0	0	34	0.93
1259319--1259423	54	1.9	55	81	12	128	60	0	0	40	0.97
1262165--1262368	79	2.6	79	81	3	214	28	16	30	25	1.96
1262326--1262399	28	2.6	28	84	0	85	24	17	32	25	1.97
1264870--1264895	13	2.0	13	100	0	52	38	15	15	30	1.88
1264849--1264915	33	2.0	33	88	0	98	43	16	14	25	1.86
1265533--1266506	55	17.5	55	90	4	1453	22	20	28	28	1.98
1266059--1266141	27	3.0	27	60	16	62	21	19	30	28	1.98
1266224--1266306	27	3.0	27	60	16	62	21	19	30	28	1.98
1272796--1272867	28	2.6	28	88	0	99	23	19	34	22	1.96
1275342--1275367	13	2.0	13	100	0	52	38	15	15	30	1.88
1275321--1275387	33	2.0	33	88	0	98	43	16	14	25	1.86
1275407--1275474	19	3.9	18	76	23	83	38	14	11	35	1.83
1275429--1275453	13	1.9	13	100	0	50	32	16	16	36	1.90
1275410--1275472	32	2.0	32	96	0	117	36	15	12	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1276532--1276587	19	2.9	19	89	2	76	35	14	17	32	1.90
1280539--1280563	13	1.9	13	100	0	50	48	12	8	32	1.69
1284309--1284360	25	2.1	25	82	7	61	42	11	9	36	1.74
1289079--1289515	76	5.6	77	76	10	334	29	24	10	35	1.89
1289079--1289479	77	5.1	77	76	10	316	29	24	10	35	1.88
1289076--1289515	156	2.8	153	75	9	395	29	24	10	35	1.89
1292566--1292590	13	1.9	13	100	0	50	32	16	16	36	1.90
1292601--1292724	52	2.4	52	88	0	194	36	19	16	27	1.93
1296744--1296835	22	4.3	22	80	13	75	38	15	15	31	1.88
1296754--1296791	20	1.9	20	100	0	76	44	10	18	26	1.82
1297223--1297262	21	1.9	21	85	10	55	15	27	15	42	1.86
1299464--1299534	28	2.6	29	86	8	87	22	25	16	35	1.95
1299305--1299691	182	2.1	187	84	6	493	27	20	14	37	1.91
1299489--1299709	81	2.7	81	90	2	329	29	19	12	38	1.89
1299230--1299739	263	2.0	259	83	7	649	28	20	12	37	1.90
1299724--1299926	79	2.6	79	82	5	250	27	21	12	38	1.89
1304606--1304798	62	3.1	61	90	3	287	23	18	19	38	1.93
1306246--1306292	16	2.8	17	81	18	55	82	14	0	2	0.75
1306247--1306300	17	3.2	16	80	15	56	79	16	1	1	0.91
1307254--1308080	63	12.9	63	75	10	447	27	22	15	33	1.95
1307339--1307693	67	5.4	66	80	9	368	26	23	14	35	1.93
1307842--1308031	69	2.7	70	75	7	190	27	23	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1308572--1308622	20	2.5	20	87	3	66	41	11	15	31	1.83
1308572--1308643	21	3.5	21	79	7	76	38	11	16	33	1.84
1308680--1308776	51	1.9	51	89	0	149	28	12	13	45	1.80
1309190--1309216	12	2.2	12	100	0	54	81	0	18	0	0.69
1322895--1322936	10	4.2	10	81	9	50	85	9	0	4	0.72
1322897--1322934	20	1.9	20	89	10	60	89	5	0	5	0.59
1323913--1324474	62	8.8	62	74	9	355	27	21	14	35	1.93
1323892--1324162	63	4.3	63	79	6	217	27	20	17	34	1.95
1323913--1324474	191	2.9	186	75	8	513	27	21	14	35	1.93
1323913--1324505	129	4.6	130	76	10	373	26	21	15	36	1.93
1325094--1325147	20	2.6	21	88	2	74	42	11	16	29	1.83
1325094--1325167	21	3.6	21	80	7	71	41	12	16	29	1.84
1327714--1327824	51	2.2	51	86	3	152	32	27	5	35	1.79
1327758--1328088	79	4.2	79	80	4	308	30	24	9	35	1.88
1332339--1332428	21	4.2	21	62	27	55	68	2	3	25	1.16
1336759--1336803	20	2.2	21	84	4	56	57	2	4	35	1.31
1340556--1340683	52	2.5	52	94	3	224	30	17	17	33	1.94
1340692--1340716	13	1.9	13	100	0	50	36	16	16	32	1.90
1340757--1340823	33	2.0	33	88	0	98	40	13	11	34	1.81
1340779--1340803	13	1.9	13	100	0	50	32	16	16	36	1.90
1341031--1341714	49	14.6	49	82	9	901	30	18	26	24	1.98
1341031--1341719	92	7.4	92	95	1	1094	30	18	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1341714--1341887	67	2.6	68	91	3	284	19	17	34	28	1.94
1341714--1341887	33	5.2	34	91	2	284	19	17	34	28	1.94
1341869--1342965	34	32.3	35	83	10	1215	32	12	34	20	1.90
1341869--1342965	71	16.1	69	84	9	1215	32	12	34	20	1.90
1341991--1342220	33	7.2	29	71	20	95	30	12	35	20	1.90
1341889--1342996	268	4.1	270	86	7	1338	32	12	34	20	1.90
1342945--1343156	63	3.4	60	79	10	219	29	16	28	25	1.97
1342501--1343156	132	5.0	126	81	12	368	31	13	32	22	1.92
1342844--1343153	31	9.9	30	84	8	230	29	15	31	24	1.95
1344699--1345534	49	17.8	49	82	9	1050	30	19	25	25	1.98
1344699--1345539	92	9.0	92	93	2	1267	30	18	26	24	1.98
1345534--1345707	67	2.6	68	91	3	284	19	17	34	28	1.94
1345534--1345707	33	5.2	34	91	2	284	19	17	34	28	1.94
1345689--1346608	34	27.3	35	82	10	954	32	12	34	21	1.90
1345811--1346040	33	7.2	29	71	19	104	30	12	36	20	1.90
1345714--1346624	268	3.4	273	87	6	1193	32	12	33	20	1.90
1346588--1346799	63	3.4	60	79	10	219	29	16	28	25	1.97
1346144--1346799	132	5.0	126	80	12	368	31	13	32	22	1.92
1346487--1346796	31	9.9	30	85	8	230	28	15	31	24	1.95
1348094--1348133	15	2.5	17	88	8	57	7	17	0	75	1.03

Tables:   1   2   3   4   5   6   7   8

The End!