genome.fa.s326.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold326
Parameters: 2 7 7 80 10 50 1000
Length:  1352760

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900076--900112	18	2.1	18	94	0	65	70	2	0	27	1.01
900388--900443	28	1.9	30	85	7	80	46	3	0	50	1.19
900418--900464	21	2.1	23	88	7	71	59	2	0	38	1.09
900557--900597	19	2.2	19	86	8	57	41	0	0	58	0.98
900979--901008	2	15.0	2	100	0	60	50	0	0	50	1.00
901253--901295	16	2.8	16	82	3	52	25	9	11	53	1.67
902820--902863	16	2.9	15	79	3	52	6	9	22	61	1.50
902818--902863	15	3.0	15	75	6	56	8	8	21	60	1.53
903647--903703	20	2.8	20	82	17	82	33	21	15	29	1.94
910193--910236	20	2.2	20	83	4	52	20	11	0	68	1.20
912415--912444	13	2.3	13	94	0	51	36	10	20	33	1.86
912395--912461	33	2.0	33	86	11	93	35	16	16	31	1.91
912490--912544	19	2.8	20	77	5	67	36	12	16	34	1.87
912530--912556	13	2.1	13	100	0	54	40	14	14	29	1.86
912681--912733	22	2.4	21	79	14	63	39	9	7	43	1.65
913118--913168	20	2.5	21	90	3	77	35	9	21	33	1.86
916265--916305	22	1.9	21	90	5	64	4	12	2	80	0.97
916341--916384	22	2.0	22	95	0	79	38	4	6	50	1.50
916561--916611	26	2.0	26	84	3	68	11	15	17	54	1.70
916583--916633	16	3.2	16	77	0	57	3	13	23	58	1.52
919438--919493	26	2.2	26	87	3	78	33	7	7	51	1.56
920817--920869	17	3.2	16	81	10	63	49	1	0	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920833--920873	10	4.3	10	79	20	52	46	0	0	53	1.00
920888--920927	14	3.1	14	73	26	52	60	0	0	40	0.97
920824--920959	42	3.3	40	83	9	148	51	1	0	46	1.15
920908--920945	17	2.2	17	95	0	67	50	0	0	50	1.00
920816--920963	41	3.5	40	79	9	154	52	2	0	45	1.17
921966--922127	54	2.9	57	93	5	294	43	17	15	23	1.87
927817--927861	21	2.1	21	84	15	58	44	0	4	51	1.21
930155--930382	115	2.0	113	83	5	289	38	6	10	44	1.64
931275--931311	19	1.9	19	100	0	74	37	13	0	48	1.43
933603--933664	31	2.0	31	87	0	88	33	14	29	22	1.94
935458--935511	20	2.7	20	85	8	65	31	12	18	37	1.89
935492--935780	146	2.0	146	93	0	488	35	13	15	35	1.87
935881--935923	22	2.0	22	90	9	70	39	9	6	44	1.64
937600--937642	18	2.4	18	88	3	61	41	2	2	53	1.26
937749--937782	13	2.8	12	86	8	50	47	2	0	50	1.16
937881--937922	19	2.2	19	86	4	57	42	14	0	42	1.45
942015--942046	2	16.0	2	100	0	64	0	0	50	50	1.00
942314--942345	2	16.0	2	100	0	64	0	50	0	50	1.00
944541--944580	2	20.0	2	100	0	80	50	0	0	50	1.00
945122--945150	2	14.5	2	100	0	58	51	0	0	48	1.00
945502--945540	19	2.1	19	85	9	53	38	0	0	61	0.96
945497--945553	21	2.5	23	77	11	64	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
945547--945583	18	2.1	18	90	5	58	40	0	2	56	1.13
945530--945586	14	3.6	16	73	19	57	47	0	1	50	1.11
945654--945844	94	2.0	95	92	1	321	43	10	3	41	1.57
959133--959209	13	5.8	13	76	14	59	50	5	6	37	1.51
959349--959452	28	3.7	27	74	3	82	45	2	9	42	1.52
959946--959979	17	1.9	18	88	5	52	29	2	23	44	1.68
964201--964339	51	2.7	51	84	5	172	43	11	13	31	1.80
964398--964435	20	1.9	20	94	0	67	26	18	13	42	1.87
966042--966089	22	2.1	22	84	3	60	35	4	0	60	1.16
969762--969937	92	1.9	92	82	0	217	34	15	10	40	1.81
969793--970105	164	1.9	164	86	2	441	32	16	9	41	1.80
969954--970354	91	4.4	92	85	3	521	33	14	7	43	1.75
975281--975316	19	1.9	18	88	5	54	41	0	8	50	1.33
975413--975476	20	3.3	19	77	10	67	40	0	6	53	1.26
975433--975477	21	2.1	21	88	8	65	46	0	2	51	1.13
975444--975492	25	1.9	26	87	4	73	46	2	4	46	1.33
979573--979652	30	2.7	29	76	16	76	32	2	6	58	1.36
980390--980561	37	4.6	38	77	13	162	27	10	21	40	1.86
980392--980561	76	2.3	76	82	6	204	27	10	21	40	1.86
980390--980561	38	4.6	38	79	10	176	27	10	21	40	1.86
984113--984159	21	2.2	21	92	0	76	42	6	17	34	1.74
984120--984162	21	2.0	21	100	0	86	44	4	18	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986455--986664	97	2.2	96	83	3	262	27	22	13	36	1.92
992315--992633	159	2.0	164	90	3	513	36	7	10	45	1.68
992823--992865	20	2.2	20	87	8	61	79	9	2	9	1.03
992828--992859	15	2.1	15	94	0	55	81	9	0	9	0.88
997536--997563	14	2.0	14	100	0	56	35	14	14	35	1.86
999240--999468	79	2.9	78	83	3	246	34	15	24	25	1.95
999322--999597	130	2.1	129	81	3	304	34	13	25	27	1.93
999446--999594	78	1.9	77	82	4	183	36	10	24	28	1.89
1001939--1001968	13	2.3	13	100	0	60	40	13	16	30	1.87
1001890--1002018	62	2.1	63	89	1	197	40	17	17	25	1.90
1001952--1002085	50	2.7	50	96	0	241	40	18	17	23	1.91
1005547--1005580	10	3.2	10	84	15	50	88	2	8	0	0.62
1005547--1005580	12	3.1	11	88	12	52	88	2	8	0	0.62
1007025--1007173	77	1.9	77	81	0	181	25	16	10	47	1.78
1008163--1008271	41	2.7	41	86	1	139	20	24	13	41	1.89
1008357--1008489	41	3.2	41	80	4	126	21	25	12	40	1.88
1008141--1008701	194	2.9	192	81	4	619	19	21	15	43	1.87
1008552--1008702	41	3.7	40	79	5	169	20	17	15	46	1.84
1008854--1009003	41	3.7	41	73	8	126	20	20	14	44	1.86
1009048--1009720	41	17.2	41	67	14	199	20	22	13	43	1.86
1008759--1009987	195	6.3	194	77	5	925	20	20	13	44	1.85
1009831--1009935	41	2.6	40	86	1	120	19	21	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010477--1010630	41	3.8	41	77	5	132	21	26	11	40	1.87
1010616--1010884	106	2.5	106	77	6	274	20	21	14	43	1.87
1012494--1012527	10	3.3	10	91	4	50	76	11	0	11	1.02
1014550--1014589	18	2.3	18	91	4	64	55	0	0	45	0.99
1015704--1015735	13	2.3	15	89	10	50	0	12	0	87	0.54
1016707--1016773	27	2.5	27	83	7	84	55	0	1	43	1.09
1016724--1016790	13	5.0	14	81	16	72	53	0	0	46	1.00
1016893--1016933	19	2.2	19	91	4	66	46	0	0	53	1.00
1018968--1019021	20	2.7	20	91	0	81	31	14	20	33	1.93
1027655--1027713	19	3.1	19	87	2	82	37	15	15	32	1.88
1027659--1027713	20	2.8	19	88	2	74	36	14	16	32	1.89
1027741--1027803	33	1.9	32	87	12	92	34	14	19	31	1.91
1027761--1027785	13	1.9	13	100	0	50	36	16	16	32	1.90
1030624--1030665	7	6.0	7	89	10	68	59	0	0	40	0.97
1030624--1030667	20	2.2	18	84	15	52	59	0	0	40	0.98
1032254--1032280	9	3.0	9	100	0	54	66	0	0	33	0.92
1032270--1032310	22	2.0	20	85	9	55	51	0	0	48	1.00
1032269--1032323	20	2.6	21	80	11	60	50	0	0	49	1.00
1032951--1032993	19	2.3	19	91	0	68	30	4	9	55	1.52
1035755--1035788	14	2.6	14	90	9	54	2	23	0	73	0.97
1039189--1039235	22	2.1	23	88	4	69	27	14	19	38	1.91
1039683--1039786	24	4.5	24	71	23	73	48	0	0	50	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039742--1039783	20	2.0	21	86	13	61	59	0	0	40	0.97
1044906--1044933	14	2.0	14	100	0	56	57	0	0	42	0.99
1053978--1054077	16	6.4	16	86	3	123	42	0	4	54	1.19
1053987--1054087	47	2.1	47	82	7	116	42	0	3	52	1.26
1054260--1054307	12	4.0	12	75	20	55	68	0	2	29	1.01
1059670--1059708	2	19.5	2	94	0	69	46	0	2	51	1.14
1068511--1068563	24	2.3	23	77	9	54	45	1	0	52	1.11
1072113--1072174	33	1.9	32	83	9	81	25	12	16	45	1.83
1078532--1078581	21	2.4	22	83	9	61	32	20	0	48	1.50
1081061--1081132	19	3.7	19	87	9	85	29	15	18	37	1.91

Tables:   1   2   3   4   5   6   7   8