genome.fa.s331.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold331
Parameters: 2 7 7 80 10 50 1000
Length:  1394875

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010497--1010625	52	2.5	52	96	0	231	34	18	17	29	1.94
1017990--1018029	21	2.0	19	85	9	53	17	10	0	72	1.11
1018180--1018218	2	19.5	2	100	0	78	51	0	0	48	1.00
1019203--1019232	15	1.9	16	93	6	53	0	23	3	73	0.98
1019340--1019379	8	4.8	8	90	9	62	20	0	0	80	0.72
1019588--1019626	21	1.9	20	94	5	69	35	15	12	35	1.86
1019685--1019747	19	3.7	18	72	24	64	34	12	15	36	1.86
1019687--1019760	32	2.3	32	92	0	121	35	13	14	36	1.86
1024809--1024881	31	2.4	31	79	4	85	35	34	17	12	1.88
1024794--1024987	88	2.1	90	87	4	275	30	31	22	14	1.94
1024865--1024992	31	4.3	31	72	13	115	30	31	22	15	1.95
1024939--1025345	149	2.7	148	83	3	508	28	25	24	21	1.99
1041977--1042428	149	3.0	151	80	4	459	29	25	23	21	1.99
1042252--1042283	14	2.1	16	88	11	50	28	21	25	25	1.99
1042924--1043077	21	7.6	20	74	10	98	42	14	14	27	1.85
1047519--1047897	150	2.5	150	81	10	445	50	8	7	33	1.60
1047519--1047975	150	3.0	152	80	8	413	50	8	8	32	1.63
1049359--1049577	82	2.7	81	81	7	239	41	15	23	20	1.90
1049502--1049615	46	2.5	46	84	2	140	45	14	20	19	1.85
1049546--1049777	80	2.9	80	77	5	234	46	16	17	19	1.84
1049418--1049655	128	1.9	126	80	3	280	44	15	20	19	1.86
1054021--1054154	50	2.7	50	88	1	198	25	19	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1056451--1057049	79	7.6	77	84	4	630	27	24	13	34	1.93
1056451--1057049	158	3.8	158	84	2	702	27	24	13	34	1.93
1056451--1057049	236	2.5	236	85	3	787	27	24	13	34	1.93
1056984--1057097	50	2.3	50	81	4	131	30	23	13	32	1.93
1056905--1057178	129	2.1	129	85	3	372	27	23	14	33	1.94
1057035--1057256	79	2.8	79	80	6	211	28	25	13	32	1.94
1056826--1057232	208	2.0	207	86	3	577	27	24	14	33	1.94
1057071--1057258	79	2.4	77	83	6	216	28	26	13	31	1.94
1068912--1068946	9	3.8	9	88	3	52	85	0	11	2	0.69
1069361--1069386	13	2.0	13	100	0	52	38	15	15	30	1.88
1069343--1069406	32	2.0	33	87	3	94	40	17	14	28	1.88
1071605--1071654	21	2.3	21	80	10	57	56	4	18	22	1.58
1071680--1071948	139	1.9	139	99	0	529	44	12	13	29	1.81
1075696--1075734	13	3.0	13	100	0	78	30	15	15	38	1.88
1078290--1078315	13	2.0	13	100	0	52	38	15	15	30	1.88
1078272--1078335	32	2.0	33	87	3	94	40	17	14	28	1.88
1078879--1078952	20	3.8	19	87	8	96	31	14	17	36	1.90
1078980--1079048	33	2.1	33	86	5	95	31	14	17	36	1.90
1081280--1081336	19	2.9	19	84	2	78	33	19	15	31	1.93
1082987--1083017	3	10.3	3	92	0	53	35	0	35	29	1.58
1085470--1085508	13	3.0	13	92	0	69	30	15	17	35	1.91
1089371--1089411	20	2.0	22	85	9	59	21	36	24	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091448--1091472	13	1.9	13	100	0	50	36	16	16	32	1.90
1091461--1091512	19	2.7	19	100	0	104	26	15	17	40	1.89
1092347--1092391	16	2.8	16	82	0	54	44	8	2	44	1.47
1097191--1097215	2	12.5	2	100	0	50	52	0	0	48	1.00
1097564--1097597	18	1.9	17	88	5	50	55	5	5	32	1.48
1098514--1098539	13	2.0	13	100	0	52	30	15	15	38	1.88
1099246--1099289	21	2.1	21	83	8	54	25	31	4	38	1.76
1101093--1101130	13	2.9	13	100	0	76	36	15	15	31	1.90
1103182--1103212	15	2.1	15	93	0	53	12	22	16	48	1.80
1110738--1110808	32	2.2	32	92	0	124	36	16	12	33	1.87
1110746--1110829	19	4.7	19	77	18	99	36	16	11	34	1.86
1111394--1111427	17	1.9	18	88	5	52	50	0	0	50	1.00
1112478--1112542	33	2.0	32	87	3	94	33	13	13	38	1.85
1116776--1116834	21	2.8	21	86	0	73	62	1	20	15	1.40
1119350--1119403	19	2.8	20	88	2	74	29	14	16	38	1.89
1119435--1119497	33	1.9	32	84	12	83	38	14	17	30	1.89
1128904--1128950	18	2.7	18	83	12	62	29	17	12	40	1.86
1128904--1128949	17	2.6	17	86	10	58	30	17	13	39	1.87
1128967--1129038	20	3.6	19	81	7	81	29	16	12	41	1.85
1131294--1131467	51	3.4	50	85	3	217	28	25	11	35	1.91
1131408--1132142	79	9.4	77	79	7	689	27	24	14	33	1.94
1131408--1132111	155	4.5	155	80	5	778	26	25	14	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1131408--1132155	234	3.2	230	81	5	790	27	24	14	33	1.94
1136236--1136289	20	2.8	20	82	2	65	31	14	14	38	1.87
1140633--1140752	52	2.3	52	94	0	204	29	17	18	35	1.94
1140633--1140772	52	2.7	52	86	4	176	30	17	18	33	1.94
1140760--1140785	13	2.0	13	100	0	52	38	15	15	30	1.88
1140826--1140892	33	2.0	33	88	0	98	40	13	11	34	1.81
1140848--1140872	13	1.9	13	100	0	50	32	16	16	36	1.90
1141313--1141340	13	2.2	13	100	0	56	28	14	14	42	1.84
1141357--1141408	20	2.6	20	84	6	70	25	17	15	42	1.88
1143616--1143776	51	3.2	51	85	3	191	29	24	11	34	1.90
1143717--1144463	79	9.5	78	79	6	744	27	24	14	33	1.94
1143717--1144422	155	4.5	156	81	5	811	26	25	14	33	1.94
1143717--1144422	312	2.3	312	90	2	1114	26	25	14	33	1.94
1146212--1146236	13	1.9	13	100	0	50	32	16	20	32	1.94
1146192--1146255	32	2.0	33	90	3	103	31	15	15	37	1.89
1146301--1146360	24	2.5	24	94	0	111	23	25	10	41	1.85
1146424--1146470	20	2.3	22	72	20	57	31	12	23	31	1.92
1146826--1146923	36	2.9	34	83	8	114	30	13	26	29	1.94
1147883--1148154	145	1.9	143	83	4	350	47	18	10	24	1.80
1149037--1150411	475	2.9	473	85	3	1863	30	18	12	38	1.88
1156084--1156318	97	2.4	98	90	1	375	31	13	28	27	1.94
1159399--1159809	28	14.7	28	81	5	388	25	16	29	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1159441--1160399	28	34.1	28	80	9	624	28	14	29	26	1.96
1159861--1159948	30	3.1	29	80	9	99	35	12	29	22	1.91
1159777--1160435	55	11.6	55	79	9	594	30	13	30	25	1.94
1159977--1160050	37	2.0	37	97	0	139	24	17	35	22	1.95
1161737--1161776	20	1.9	21	85	10	55	5	7	12	75	1.18
1165573--1166093	261	2.0	261	95	0	925	23	24	24	26	2.00
1169182--1169219	13	2.9	13	100	0	76	36	15	15	31	1.90
1169272--1169351	19	4.5	19	77	17	91	36	15	15	33	1.88
1169264--1169334	32	2.2	32	92	0	115	36	15	15	32	1.89
1169382--1169432	21	2.4	21	75	12	59	31	17	15	35	1.92
1170055--1170187	48	2.8	48	91	0	203	38	18	23	19	1.93
1170205--1170610	49	8.6	49	81	9	461	32	17	25	24	1.97
1170212--1170581	92	4.0	92	87	5	455	31	18	25	24	1.98
1171204--1171441	97	2.5	95	87	6	354	33	13	26	26	1.93
1172645--1172691	22	2.1	23	84	4	60	42	10	21	25	1.85
1174565--1174708	49	2.9	50	85	7	211	41	9	18	30	1.82
1175631--1176412	56	13.7	56	76	9	538	23	16	31	28	1.96
1175631--1176383	139	5.3	140	78	9	686	23	16	31	28	1.96
1175631--1176066	28	15.5	28	79	6	389	23	17	30	28	1.97
1176082--1176412	28	11.9	27	77	3	248	23	16	30	29	1.96
1175980--1176160	95	1.9	95	85	6	251	21	16	34	28	1.94
1175872--1176271	206	1.9	206	84	4	538	24	17	31	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1176068--1176415	84	4.2	84	76	6	294	23	15	32	28	1.95
1186554--1186675	51	2.4	51	89	6	201	26	19	19	34	1.96
1186686--1186710	13	1.9	13	100	0	50	36	16	16	32	1.90
1186748--1186848	32	3.1	32	94	1	166	35	16	11	35	1.86
1186753--1186849	19	5.7	19	66	27	74	36	16	12	35	1.86
1187641--1187791	52	2.9	55	85	8	206	33	19	25	21	1.97
1187633--1188068	43	9.1	49	77	13	460	31	18	25	24	1.97
1187699--1188069	92	4.0	92	91	3	564	30	18	25	24	1.98
1188066--1188255	32	5.9	32	87	3	265	16	18	35	30	1.93
1188267--1188683	34	12.8	33	75	12	335	33	12	33	20	1.90

Tables:   1   2   3   4   5   6   7   8