genome.fa.s331.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold331
Parameters: 2 7 7 80 10 50 1000
Length:  1394875

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337195--337241	21	2.3	20	78	10	51	40	6	19	34	1.77
339020--345737	476	14.2	476	81	4	7330	36	13	17	31	1.89
345309--346167	433	2.0	431	84	2	1132	36	13	18	31	1.90
345741--348248	475	5.3	476	81	4	2839	37	13	17	31	1.88
345741--348248	929	2.7	931	84	4	3043	37	13	17	31	1.88
348722--348848	61	2.1	60	86	4	175	35	12	27	24	1.92
348815--349001	52	3.6	52	83	4	216	35	16	24	24	1.95
348803--349134	104	3.4	99	78	9	320	34	15	24	25	1.95
348954--349405	43	9.9	43	69	16	221	32	17	24	25	1.97
348859--349126	49	5.5	49	80	10	217	33	16	24	25	1.96
348908--349558	95	7.0	95	72	13	381	33	17	23	25	1.96
348883--349233	141	2.5	140	79	7	359	34	16	24	24	1.95
348954--349412	138	3.3	137	77	8	464	32	17	24	25	1.97
349596--349736	27	5.0	26	71	15	84	31	14	31	21	1.94
349567--349704	60	2.3	62	83	5	174	29	14	34	21	1.93
349655--349727	27	2.7	27	82	6	85	31	15	34	19	1.92
349762--350004	33	7.5	33	81	7	216	34	12	30	23	1.92
349717--350004	66	4.4	66	79	6	273	33	13	30	22	1.93
351174--351242	9	7.2	9	73	16	59	1	4	13	81	0.91
351157--351203	17	2.7	17	86	3	58	2	10	12	74	1.16
351175--351237	17	3.9	17	75	10	60	1	3	14	80	0.90
351181--351234	19	2.8	19	85	2	63	1	3	12	81	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351174--351233	26	2.2	26	83	13	77	1	3	13	81	0.89
351176--351242	22	3.2	21	81	8	66	1	4	13	80	0.93
353950--353975	13	2.0	13	100	0	52	38	15	15	30	1.88
353932--353995	32	2.0	33	87	3	94	40	17	14	28	1.88
358040--358078	15	2.6	15	91	0	60	51	15	20	12	1.76
360140--360178	13	3.0	13	96	0	69	30	17	15	35	1.91
362726--362751	13	2.0	13	100	0	52	38	15	15	30	1.88
362708--362771	32	2.0	33	87	3	94	40	17	14	28	1.88
368266--368292	13	2.1	13	100	0	54	40	14	14	29	1.86
368247--368312	33	2.0	33	93	0	114	37	12	13	36	1.82
369963--369994	16	2.0	16	93	0	55	18	0	3	78	0.89
371688--371729	19	2.3	18	87	4	57	23	0	0	76	0.79
371683--371727	24	1.9	24	90	4	74	22	0	0	77	0.76
372232--373285	42	25.1	42	73	8	517	37	16	28	17	1.91
372239--373290	84	12.5	84	76	5	773	37	16	28	16	1.91
372239--373290	126	8.3	126	75	7	738	37	16	28	16	1.91
372737--372913	85	2.1	84	80	1	192	39	19	23	17	1.92
381365--381409	22	2.0	23	82	4	56	44	0	20	35	1.51
385865--385912	13	3.8	12	81	13	60	18	0	2	79	0.84
385866--385896	16	1.9	16	93	0	53	16	0	3	80	0.83
387046--387102	29	2.0	29	92	0	96	17	29	19	33	1.95
387149--387201	19	2.8	19	75	8	54	16	5	0	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387151--387211	29	2.1	30	84	9	81	18	6	0	75	1.01
388006--388145	61	2.3	61	83	2	174	38	7	28	25	1.83
388099--388285	52	3.6	52	82	6	184	31	13	29	25	1.94
388243--388331	43	2.1	43	93	0	151	28	17	29	24	1.98
388649--388673	13	1.9	13	100	0	50	32	16	16	36	1.90
388661--388713	20	2.6	21	82	8	65	37	16	16	28	1.91
388773--388832	13	5.0	13	69	19	58	38	15	15	31	1.88
388755--388853	34	3.0	34	92	5	159	38	15	15	31	1.88
391874--391925	22	2.4	22	86	0	77	26	15	13	44	1.84
394983--395007	13	1.9	13	100	0	50	32	16	20	32	1.94
396856--396915	18	3.3	17	70	21	50	41	1	20	36	1.62
396857--396930	37	2.0	37	91	0	121	40	1	22	35	1.63
396860--396918	17	3.3	17	69	28	50	40	1	23	33	1.65
396870--396930	18	3.2	20	69	19	58	37	0	22	39	1.55
397620--397652	13	2.4	14	85	15	50	42	15	15	27	1.86
397627--397652	13	2.0	13	100	0	52	38	15	15	30	1.88
398429--398552	49	2.5	49	90	0	185	35	10	25	29	1.89
398749--404043	476	11.1	476	74	10	2273	36	13	18	31	1.89
401742--402055	158	2.0	159	86	3	445	35	11	18	33	1.88
405591--406239	28	22.5	28	82	7	741	29	30	16	23	1.96
405591--406239	57	11.2	57	85	5	779	29	30	16	23	1.96
405618--406236	116	5.3	116	88	5	855	29	30	15	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406036--406300	62	4.4	62	82	8	198	29	27	16	26	1.97
407117--407191	20	3.8	20	87	0	114	32	14	13	40	1.85
409424--411120	476	3.6	470	83	4	1966	36	13	18	31	1.89
411041--411221	100	1.8	100	80	4	222	45	10	15	28	1.79
411394--411488	47	2.0	48	97	2	183	40	4	18	36	1.71
413489--413528	9	4.6	9	90	3	64	10	0	0	90	0.47
413483--413528	17	2.7	17	87	9	67	8	2	0	89	0.57
413497--413534	17	2.2	18	85	4	51	18	2	0	78	0.86
416241--416687	224	2.0	224	96	0	831	27	22	19	30	1.98
421959--423625	890	1.9	887	83	2	2198	36	13	18	31	1.89
422857--424221	467	2.9	469	84	4	1595	36	14	18	30	1.91
425287--425365	22	3.4	22	67	13	59	31	5	30	32	1.79
425909--425935	13	2.1	13	100	0	54	29	14	14	40	1.86
425919--425975	19	2.9	19	89	2	87	31	17	17	33	1.93
426025--426073	13	4.2	13	75	24	63	32	12	18	36	1.88
426004--426073	33	2.1	34	89	7	108	32	11	20	35	1.88
426811--434732	476	16.6	475	81	3	8448	36	13	17	31	1.89
435848--444200	476	17.7	477	80	5	8570	36	13	18	31	1.90
435848--444200	942	8.9	940	83	4	8361	36	13	18	31	1.90
445106--445161	19	2.9	19	82	12	69	37	16	16	30	1.90
445146--445202	13	4.9	12	73	20	50	36	12	15	35	1.85
445159--445222	20	3.5	20	70	27	70	34	10	17	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445146--445224	33	2.4	33	97	0	149	35	12	16	35	1.87
445159--445222	10	6.1	10	71	10	56	34	10	17	37	1.85
447694--447730	13	2.8	13	91	0	56	40	16	10	32	1.83
452229--452259	13	2.4	13	94	0	53	35	12	16	35	1.87
452209--452271	33	1.9	32	87	12	92	30	17	14	38	1.89
452304--452374	19	3.6	19	86	5	79	35	18	16	29	1.93
452911--452951	19	2.2	19	95	0	73	24	34	4	36	1.77
456945--456969	13	1.9	13	100	0	50	36	16	16	32	1.90
456925--456990	32	2.0	33	94	2	116	34	12	16	36	1.86
457064--457188	52	2.4	52	93	0	205	36	16	18	28	1.93
471554--473590	474	4.3	474	84	3	2467	37	14	16	31	1.89
471554--473607	942	2.2	942	84	3	2606	37	14	16	31	1.89
473922--473946	13	1.9	13	100	0	50	32	16	16	36	1.90
474019--474111	19	5.5	19	72	27	102	38	16	15	30	1.89
474035--474124	13	6.0	13	71	26	63	36	15	14	33	1.88
474019--474146	32	4.0	32	95	3	222	38	16	14	30	1.89
475938--475984	24	1.9	24	86	4	67	53	14	23	8	1.69
482706--482731	13	2.0	13	100	0	52	30	15	15	38	1.88
482820--482847	13	2.2	13	100	0	56	28	14	17	39	1.89
483584--484956	474	2.9	472	85	2	1799	36	14	17	31	1.90
486871--486984	52	2.2	50	81	3	138	36	8	23	30	1.85
489310--489359	20	2.5	20	87	6	66	42	12	18	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490246--491397	464	2.5	466	82	3	1361	38	14	17	30	1.89
491910--491940	14	2.2	14	94	0	53	16	19	12	51	1.76
491947--492997	477	2.2	473	83	5	1303	35	13	17	33	1.90
492725--493343	322	1.9	317	83	4	796	33	16	18	32	1.93
493643--495034	476	2.9	472	84	4	1695	36	13	18	32	1.90
495101--501391	476	13.4	474	76	7	5370	36	13	18	31	1.90
502195--502250	19	2.8	20	81	8	69	33	17	16	32	1.92
502236--502262	13	2.1	13	100	0	54	40	14	14	29	1.86
502754--502844	39	2.2	40	80	7	103	34	28	3	34	1.74
504673--504700	13	2.2	13	100	0	56	42	14	14	28	1.84

Tables:   1   2   3   4   5   6   7   8