genome.fa.s331.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold331
Parameters: 2 7 7 80 10 50 1000
Length:  1394875

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506904--506930	13	2.1	13	100	0	54	29	14	14	40	1.86
506885--506949	32	2.0	32	87	3	94	26	15	16	41	1.88
507001--507053	20	2.7	20	87	0	79	35	11	16	35	1.85
509326--509388	32	1.9	33	90	3	101	28	17	14	39	1.89
509439--509505	33	2.0	32	86	11	91	35	11	19	32	1.88
509491--509609	52	2.3	52	100	0	238	36	16	15	31	1.90
513128--513154	13	2.1	13	100	0	54	40	14	14	29	1.86
513109--513173	33	2.0	32	88	8	96	41	16	15	26	1.88
513464--529067	952	16.4	952	89	2	20390	36	14	18	31	1.90
526748--526835	44	2.0	44	100	0	176	34	13	18	34	1.90
513464--529067	476	32.8	474	82	4	17271	36	14	18	31	1.90
526792--535356	476	17.7	476	72	11	3368	35	14	18	31	1.90
528854--529308	226	2.0	226	83	1	572	33	12	19	34	1.89
530735--530798	31	2.0	32	87	6	94	28	14	14	43	1.83
530929--535356	475	9.3	473	81	4	4690	36	14	17	31	1.90
535061--535646	291	2.0	291	86	2	827	37	15	15	31	1.89
534629--536122	768	1.9	764	86	3	1970	36	14	18	31	1.90
535362--537402	476	4.3	476	82	4	2421	36	13	18	31	1.90
539691--539716	13	2.0	13	100	0	52	38	15	15	30	1.88
540610--540650	21	2.0	21	85	9	57	39	12	9	39	1.76
540690--540760	20	3.6	19	77	7	70	39	16	14	29	1.88
540730--540866	53	2.6	53	95	1	238	37	17	17	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540891--540921	10	3.1	10	90	0	53	22	29	6	41	1.78
540909--540963	21	2.5	22	91	5	94	27	25	12	34	1.92
542747--542803	20	2.9	19	82	7	60	29	21	8	40	1.83
545319--545357	13	2.9	14	92	7	64	35	15	12	35	1.86
547004--547029	13	2.0	13	100	0	52	30	15	15	38	1.88
547068--547143	21	3.7	21	80	3	100	28	17	11	42	1.84
547089--547161	20	3.6	20	81	3	101	31	19	13	35	1.91
547068--547161	41	2.3	41	98	0	179	29	18	12	39	1.88
549611--549635	13	1.9	13	100	0	50	32	16	20	32	1.94
549624--549700	20	3.6	20	74	19	66	44	15	14	25	1.84
551715--551745	15	2.1	15	93	0	53	12	22	16	48	1.80
553549--553593	21	2.1	21	84	8	56	22	20	4	53	1.63
555810--555835	13	2.0	13	100	0	52	30	15	15	38	1.88
555874--555949	21	3.7	21	80	3	100	28	17	11	42	1.84
555895--555967	20	3.6	20	81	3	101	31	19	13	35	1.91
555874--555967	41	2.3	41	98	0	179	29	18	12	39	1.88
563069--563111	13	3.3	13	83	0	50	34	11	9	44	1.73
572117--575301	476	6.7	474	81	3	3544	37	13	17	31	1.89
577334--577380	20	2.3	21	76	23	64	34	12	19	34	1.89
577736--577802	37	1.9	35	88	11	102	32	11	25	29	1.92
582507--582615	55	2.0	55	96	0	200	35	12	20	31	1.90
580222--584179	475	8.4	471	78	6	3462	37	13	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584945--584969	13	1.9	13	100	0	50	32	16	16	36	1.90
585621--585716	36	3.0	31	81	14	106	31	13	25	30	1.94
586632--587226	49	12.5	49	85	7	755	25	26	18	30	1.98
586659--587217	92	5.9	92	88	7	811	25	25	18	30	1.98
587036--587173	43	3.1	43	88	9	197	25	25	19	29	1.98
587127--587248	52	2.3	55	84	4	169	25	25	13	35	1.93
587230--587356	67	1.9	68	83	1	166	24	24	11	39	1.89
588052--588118	33	2.0	33	88	0	98	34	11	13	40	1.81
588072--588096	13	1.9	13	100	0	50	36	16	16	32	1.90
588159--588183	13	1.9	13	100	0	50	32	16	16	36	1.90
591921--595592	476	7.7	473	81	4	3906	38	14	17	30	1.89
591921--595597	950	3.9	953	84	3	4435	37	14	17	30	1.89
595257--596290	346	3.0	346	92	1	1653	37	13	15	33	1.87
596804--597069	143	1.9	143	83	4	349	36	11	18	34	1.87
596947--599511	476	5.4	473	84	2	3010	37	14	18	30	1.91
598333--598973	159	4.0	159	65	14	345	36	15	17	30	1.91
603472--605591	475	4.5	474	81	3	2306	37	13	18	30	1.90
605687--605735	20	2.3	20	86	6	62	8	22	46	22	1.77
606331--606356	8	3.2	8	100	0	52	61	23	0	15	1.33
606915--606940	13	2.0	13	100	0	52	38	15	15	30	1.88
609158--609202	21	2.1	21	84	8	56	53	4	20	22	1.63
611006--611036	15	2.1	15	93	0	53	48	16	22	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616980--617019	13	3.2	12	83	16	55	82	17	0	0	0.67
616980--617018	14	2.9	13	88	3	51	82	17	0	0	0.68
617341--617375	9	3.9	9	89	10	54	91	8	0	0	0.42
617337--617376	20	2.0	20	90	9	64	90	10	0	0	0.47
617339--617376	16	2.5	15	91	8	67	92	7	0	0	0.40
618313--619130	67	12.4	65	73	12	273	22	31	11	34	1.90
618351--619132	33	23.7	34	75	10	617	21	31	11	34	1.90
618475--619130	101	6.6	101	82	8	731	21	30	11	35	1.90
619134--619689	49	12.0	49	81	11	625	25	25	17	31	1.97
619126--619690	43	12.3	44	80	12	566	25	25	17	30	1.97
619133--619690	92	6.1	92	87	7	744	25	25	17	31	1.97
619226--619716	135	3.6	133	86	6	604	25	25	18	30	1.98
619917--620060	53	2.7	52	78	7	173	25	26	15	33	1.95
621929--623435	476	3.2	471	82	2	1698	37	14	18	30	1.90
628771--628823	20	2.6	21	82	8	65	28	16	16	37	1.91
628811--628835	13	1.9	13	100	0	50	36	16	16	32	1.90
628845--628883	20	2.0	19	95	5	69	30	10	23	35	1.88
631308--631332	13	1.9	13	100	0	50	36	16	16	32	1.90
637448--637500	20	2.7	21	83	16	69	32	13	18	35	1.90
637638--637690	20	2.7	21	88	11	85	30	13	22	33	1.92
637311--637888	190	3.0	193	95	2	1027	28	14	21	35	1.93
637833--637884	20	2.7	20	90	3	79	26	13	21	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637966--637990	13	1.9	13	100	0	50	36	16	16	32	1.90
638000--638038	20	2.0	19	85	5	51	28	7	23	41	1.82
638303--639846	474	3.3	473	83	3	1917	37	13	18	30	1.89
643897--644212	87	3.5	88	75	7	289	30	17	24	27	1.97
644233--644305	28	2.6	28	81	14	89	20	13	30	35	1.91
644274--644360	27	3.1	27	79	9	86	26	16	32	25	1.96
644334--644488	34	4.5	34	89	1	202	36	11	31	20	1.88
644483--644561	30	2.7	28	79	9	86	15	13	36	34	1.87
644466--644551	30	2.9	30	74	6	86	19	13	34	31	1.91
646001--646087	10	8.5	10	73	14	70	1	5	9	83	0.84
645988--646087	38	2.8	34	81	15	105	1	6	11	82	0.90
646003--646085	42	2.0	42	88	4	123	1	6	9	83	0.87
665012--668445	476	7.2	472	83	4	3666	36	13	17	31	1.89
671589--671662	20	3.7	20	74	0	76	44	13	9	32	1.76
671652--671715	30	2.1	30	94	0	110	45	10	15	28	1.80
672443--672525	32	2.6	32	84	3	96	27	20	24	27	1.99
672469--672540	29	2.4	29	83	6	81	25	16	29	29	1.97
672469--673050	28	20.4	28	76	9	360	23	17	30	28	1.97
672469--673047	56	10.2	56	76	11	455	23	17	29	29	1.97
672693--672874	29	6.1	31	81	8	175	21	18	31	29	1.97
672525--673020	89	5.8	89	76	10	272	23	17	30	29	1.97
672787--672987	104	1.9	106	88	2	307	23	17	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672890--673050	85	1.9	85	89	2	252	26	16	29	27	1.97
674427--674819	28	13.6	28	75	10	276	22	15	32	29	1.95
674826--674910	14	6.3	13	69	17	50	32	16	12	37	1.87
676183--676248	32	2.0	33	91	2	107	25	18	28	27	1.98
676180--676840	28	23.2	28	72	13	198	25	16	27	30	1.97
676405--676492	29	3.0	30	71	15	83	22	14	30	31	1.94
676411--676513	32	3.4	32	71	15	101	21	14	32	32	1.93
676500--676841	56	6.3	55	78	12	323	27	16	26	30	1.96
676588--676726	75	1.9	75	87	0	206	26	17	27	28	1.97
676558--676754	103	1.9	103	93	2	342	26	17	26	29	1.97

Tables:   1   2   3   4   5   6   7   8