genome.fa.s46.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold46
Parameters: 2 7 7 80 10 50 1000
Length:  2524624

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  6  of  15  ( 1780 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830510--830543	5	6.8	5	93	0	59	58	23	0	17	1.38
841192--841244	20	3.0	17	86	10	63	52	0	0	47	1.00
841210--841249	20	2.0	20	95	0	71	57	0	0	42	0.98
841251--841331	35	2.5	34	82	9	98	41	0	1	56	1.07
841271--841343	34	2.2	35	87	7	107	39	0	0	60	0.97
841811--841846	18	2.0	18	88	0	54	52	2	2	41	1.30
844325--844350	13	2.0	13	100	0	52	38	15	15	30	1.88
846569--846613	21	2.1	21	84	8	56	53	4	20	22	1.63
848417--848447	15	2.1	15	93	0	53	48	16	22	12	1.80
850523--850561	13	3.0	13	96	0	69	30	12	15	41	1.85
852417--852481	29	2.2	29	100	0	130	32	9	32	26	1.88
852428--852489	29	2.1	29	87	0	88	35	9	25	29	1.88
853137--853162	13	2.0	13	100	0	52	38	15	15	30	1.88
854318--854350	17	1.9	17	88	11	50	18	0	12	69	1.18
872294--872318	13	1.9	13	100	0	50	32	16	16	36	1.90
875402--875454	3	18.0	3	84	3	72	32	33	0	33	1.58
878235--878267	2	17.0	2	93	6	59	48	0	0	51	1.00
879460--879492	7	4.9	7	88	3	50	87	0	12	0	0.53
879818--879866	18	2.7	19	78	15	50	46	0	22	30	1.52
880625--880684	18	3.4	17	80	17	68	53	0	1	45	1.10
880625--880669	19	2.4	18	83	16	65	55	0	0	44	0.99
881085--881139	22	2.5	22	80	11	67	23	1	7	67	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881105--881150	22	2.2	21	82	14	60	30	2	2	65	1.16
881592--881637	24	1.9	24	86	8	67	69	0	28	2	1.00
882484--882516	17	2.0	17	88	5	50	45	0	0	54	0.99
882621--882687	35	2.0	32	83	13	82	50	1	0	47	1.10
882651--882686	18	1.9	19	88	5	56	55	0	0	44	0.99
882652--882709	20	2.9	20	80	10	57	63	0	0	36	0.94
883365--883460	18	5.1	18	74	18	63	58	1	0	40	1.05
883394--883467	26	2.9	25	82	11	89	58	0	1	40	1.07
886317--886365	21	2.4	21	82	3	64	26	2	2	69	1.10
888982--889012	6	5.2	6	92	0	53	38	16	12	32	1.86
892376--892402	13	2.1	13	100	0	54	29	14	14	40	1.86
892357--892421	33	2.0	32	87	3	94	32	15	12	40	1.84
892387--892442	19	2.9	19	94	0	94	37	16	10	35	1.83
892470--892523	20	2.7	20	88	5	74	31	14	16	37	1.89
894098--894133	3	12.0	3	87	0	54	38	0	30	30	1.58
910179--910205	13	2.1	13	100	0	54	40	14	14	29	1.86
910158--910225	34	2.0	33	88	2	100	41	11	16	30	1.84
910257--910317	19	3.5	19	70	25	71	37	13	13	36	1.83
910250--910334	32	2.7	32	98	0	161	38	12	12	35	1.82
913296--913320	13	1.9	13	100	0	50	28	16	16	40	1.89
915895--915981	20	4.7	20	72	21	82	31	16	17	35	1.92
915911--915984	33	2.2	33	95	0	130	31	17	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916666--916762	13	5.7	18	71	27	79	30	12	18	38	1.88
916668--916765	32	3.0	32	95	1	169	32	12	18	36	1.88
916806--916830	13	1.9	13	100	0	50	32	16	16	36	1.90
927642--927670	2	14.5	2	100	0	58	51	0	0	48	1.00
928937--929019	26	3.2	26	62	21	64	32	14	19	33	1.92
928920--929026	53	2.0	53	96	0	196	31	14	17	36	1.90
930533--930598	24	2.8	23	80	8	80	77	0	9	13	0.99
932668--932697	15	2.0	15	93	0	51	36	13	0	50	1.42
932780--933019	118	2.0	119	89	4	367	35	14	6	43	1.71
933944--933991	16	3.3	15	80	11	55	56	0	0	43	0.99
934025--934073	22	2.2	22	82	7	55	48	2	6	42	1.39
934469--934493	2	12.5	2	100	0	50	52	0	0	48	1.00
936571--936707	16	8.8	16	63	15	54	52	1	0	45	1.09
936596--936701	30	3.5	30	86	1	149	53	1	0	44	1.11
937091--937126	20	1.9	20	88	11	58	27	0	2	69	1.02
937493--937555	26	2.6	22	77	18	63	41	1	0	57	1.08
937632--937666	18	2.0	17	88	5	52	31	0	2	65	1.07
938491--938532	3	14.3	3	95	5	77	0	33	0	66	0.92
939495--939519	12	2.1	12	100	0	50	44	8	8	40	1.63
940360--941237	154	5.8	153	75	7	624	38	19	17	23	1.93
942364--942438	21	3.7	21	91	3	100	61	9	6	22	1.50
943144--943179	18	2.0	18	88	0	54	66	5	0	27	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943286--943597	167	1.9	165	86	5	441	50	7	8	33	1.61
943291--943722	167	2.6	165	80	6	435	52	7	9	30	1.61
944279--944431	5	28.8	5	72	17	89	73	1	24	0	0.96
944279--944425	17	8.5	16	65	19	64	73	1	24	0	0.96
944278--944425	45	3.2	47	75	14	139	73	1	24	0	0.95
944349--944425	29	2.7	29	81	18	90	74	2	23	0	0.95
944279--944426	40	3.8	40	76	10	112	72	1	25	0	0.96
944279--944433	19	7.9	18	70	19	80	73	1	24	0	0.95
944278--944425	6	24.5	6	68	17	58	73	1	24	0	0.95
946770--946808	6	6.7	6	97	2	71	33	0	0	66	0.92
946764--946838	18	4.2	17	74	14	62	34	0	0	65	0.93
947632--947670	17	2.2	17	86	9	51	41	0	0	58	0.98
947636--947670	17	2.1	17	89	10	54	40	0	0	60	0.97
947752--947795	17	2.6	17	81	0	52	56	0	2	40	1.11
948957--949175	109	2.0	108	93	0	375	47	11	8	31	1.70
949100--949138	21	1.9	20	84	5	51	58	15	5	20	1.55
949831--949891	19	3.2	18	69	17	52	52	13	1	32	1.50
949832--949916	38	2.2	38	83	4	100	51	12	5	29	1.63
956463--956502	20	2.0	21	90	5	64	42	7	15	35	1.75
956513--956562	20	2.5	20	90	0	73	22	18	18	42	1.90
960527--960870	190	1.8	190	84	3	469	32	14	21	31	1.94
969120--969165	20	2.4	19	82	7	65	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980566--980623	16	3.7	16	76	4	55	63	0	0	36	0.94
981064--981109	21	2.0	24	84	12	62	63	0	0	36	0.95
985823--985859	14	2.6	15	83	12	51	43	5	10	40	1.63
986509--986564	20	2.8	20	83	0	76	30	17	12	39	1.87
986590--986642	19	2.7	19	85	2	70	33	3	20	41	1.70
990512--990537	13	2.0	13	100	0	52	38	15	15	30	1.88
990491--990557	33	2.0	33	88	0	98	43	16	14	25	1.86
990577--990648	19	4.2	18	75	22	75	38	13	9	37	1.78
990599--990623	13	1.9	13	100	0	50	32	16	16	36	1.90
990582--990642	32	1.9	32	96	0	113	37	16	11	34	1.85
991438--992513	59	18.9	54	88	5	644	23	20	28	26	1.99
991572--991717	47	2.9	47	84	13	177	17	21	29	31	1.96
991438--992039	110	5.4	104	80	10	478	22	20	29	27	1.99
991438--992039	213	2.7	212	81	8	611	22	20	29	27	1.99
991619--992546	59	15.9	59	89	4	1223	24	20	28	26	1.99
991619--992546	119	8.0	118	88	4	1223	24	20	28	26	1.99
991815--992546	178	4.1	178	94	1	1234	25	20	27	25	1.99
993528--993577	12	4.2	12	85	14	52	0	6	10	84	0.79
1003956--1004037	28	2.9	28	87	3	103	30	19	28	21	1.98
1004024--1004140	51	2.4	51	84	12	147	35	11	22	31	1.89
1004043--1004152	51	2.2	51	83	6	143	37	9	22	30	1.85
1006508--1006533	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006487--1006553	33	2.0	33	88	0	98	43	16	14	25	1.86
1006577--1006640	19	3.8	17	75	25	64	39	17	12	31	1.87
1006576--1006638	32	2.0	32	93	0	108	36	17	12	33	1.88
1006676--1006758	21	4.1	20	83	6	87	34	14	14	36	1.87
1006895--1006934	20	2.0	20	85	5	53	25	10	7	57	1.57
1008179--1008233	21	2.7	21	83	8	69	36	12	16	34	1.87
1010522--1010581	31	1.9	31	86	0	84	30	15	20	35	1.93
1010562--1010661	37	2.6	39	84	6	125	23	15	23	39	1.92
1022349--1022453	37	2.8	38	81	11	126	24	14	20	40	1.90
1022349--1022465	38	3.1	36	80	11	128	25	17	19	37	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15