genome.fa.s475.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold475
Parameters: 2 7 7 80 10 50 1000
Length:  1773841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1353 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1743129--1744179	115	9.2	111	85	7	1168	27	28	20	24	1.99
1743302--1743387	27	3.1	27	63	21	70	27	27	18	25	1.98
1744941--1744998	21	2.8	21	84	7	82	39	15	13	31	1.86
1746181--1746330	79	1.9	78	87	4	223	33	14	26	25	1.94
1746262--1746549	153	1.9	153	82	5	359	32	12	26	28	1.92
1746262--1746548	51	5.6	50	83	4	308	32	12	26	28	1.92
1746268--1746549	102	2.8	101	85	4	370	32	12	25	29	1.92
1748910--1748935	13	2.0	13	100	0	52	38	15	15	30	1.88
1748889--1748955	33	2.0	33	88	0	98	43	16	14	25	1.86
1748975--1749042	19	3.9	18	76	23	83	38	14	11	35	1.83
1748997--1749021	13	1.9	13	100	0	50	32	16	16	36	1.90
1748978--1749040	32	2.0	32	96	0	117	36	15	12	34	1.86
1749098--1749154	21	2.7	21	97	0	105	36	19	10	33	1.86
1749157--1749194	20	1.9	20	100	0	76	10	2	0	86	0.66
1749160--1749197	19	2.0	19	100	0	76	10	5	0	84	0.77
1749730--1750462	55	13.3	55	92	3	1090	21	20	29	28	1.98
1749996--1750085	26	3.3	26	67	19	76	20	17	33	28	1.95
1751444--1751487	8	5.6	8	82	15	56	0	2	9	88	0.59
1751444--1751491	13	3.8	12	83	8	60	0	2	10	87	0.62
1751444--1751487	22	2.0	23	90	4	72	0	2	9	88	0.59
1763985--1764134	79	1.9	78	87	4	223	33	14	26	25	1.94
1764066--1764353	153	1.9	153	82	5	359	32	12	26	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1764066--1764352	51	5.6	50	83	4	308	32	12	26	28	1.92
1764072--1764353	102	2.8	101	85	4	370	32	12	25	29	1.92
1766710--1766735	13	2.0	13	100	0	52	38	15	15	30	1.88
1766794--1766824	13	2.3	14	94	5	55	29	16	12	41	1.85
1766782--1766843	32	1.9	32	96	0	115	33	16	12	37	1.87
1766779--1766846	19	3.9	19	78	21	85	36	14	11	36	1.83
1766901--1766957	21	2.7	21	97	0	105	36	19	10	33	1.86
1766963--1766996	1	34.0	1	90	0	50	2	2	0	94	0.38
1766965--1766998	17	2.0	17	100	0	68	5	5	0	88	0.64
1772062--1772086	13	1.9	13	100	0	50	36	16	16	32	1.90
1772042--1772108	33	2.0	33	88	0	98	32	11	14	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!