genome.fa.s475.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold475
Parameters: 2 7 7 80 10 50 1000
Length:  1773841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1353 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266821--266887	33	2.0	33	85	0	89	43	17	13	25	1.86
266907--266993	19	4.9	19	83	16	123	39	14	11	34	1.83
266929--266953	13	1.9	13	100	0	50	32	16	16	36	1.90
266910--266972	32	2.0	32	96	0	117	36	15	12	34	1.86
267049--267105	21	2.7	21	97	0	105	36	19	10	33	1.86
267113--267146	14	2.3	15	90	5	52	17	0	0	82	0.67
270068--270130	33	1.9	33	90	0	99	31	17	19	31	1.95
270180--270205	13	2.0	13	100	0	52	38	15	15	30	1.88
270162--270225	33	2.0	32	87	9	94	40	17	14	28	1.88
276522--276562	22	2.0	20	86	13	57	31	21	4	41	1.74
278958--278992	10	3.5	10	92	0	52	25	17	31	25	1.97
280150--280189	19	2.1	19	85	0	53	85	2	12	0	0.71
281159--281642	61	8.0	61	86	4	658	25	27	18	28	1.98
281159--281642	120	4.0	121	85	4	663	25	27	18	28	1.98
281159--281649	181	2.7	181	91	2	797	25	27	17	28	1.98
281612--281672	30	2.0	30	93	0	104	26	31	19	22	1.98
281550--281729	91	2.0	91	90	2	281	25	27	19	27	1.99
281644--281760	61	1.9	61	92	3	200	27	25	19	27	1.99
284679--285447	79	9.7	78	76	9	619	28	22	13	34	1.93
284773--284900	28	4.5	28	69	18	77	28	23	16	32	1.96
284661--285447	156	5.0	155	77	8	627	28	22	13	35	1.92
284843--285405	235	2.4	235	95	0	984	28	22	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296307--296478	79	2.2	79	83	4	213	34	18	20	26	1.95
296410--296529	51	2.4	51	84	2	152	30	14	27	28	1.95
296463--296610	79	1.9	79	84	5	201	27	14	28	29	1.96
296339--296608	130	2.1	130	83	2	337	32	14	24	28	1.95
300652--300768	51	2.3	51	83	2	146	29	12	28	29	1.93
300604--300845	130	1.9	130	82	1	306	33	12	23	29	1.92
300736--301082	79	4.4	79	83	5	398	33	14	24	27	1.94
300819--300875	28	1.9	28	86	10	78	35	17	24	22	1.95
300527--300924	209	1.9	209	84	4	534	33	14	24	27	1.94
300702--301082	158	2.4	157	87	3	518	32	13	25	28	1.94
303469--303604	50	2.7	51	86	3	195	41	13	18	26	1.88
310991--311065	20	3.7	19	79	10	69	42	10	12	34	1.77
313953--313987	7	5.1	7	93	6	63	14	11	14	60	1.60
315253--315300	21	2.2	23	85	10	66	39	8	6	45	1.59
315967--316024	26	2.2	26	81	9	64	50	8	13	27	1.71
321915--321971	13	3.9	13	76	24	60	35	14	17	33	1.90
321928--321990	19	3.7	18	76	24	73	33	12	17	36	1.88
321914--321997	32	2.6	32	98	0	159	33	13	16	36	1.87
322022--322048	13	2.1	13	100	0	54	29	14	14	40	1.86
329002--329039	16	2.4	16	91	4	60	86	13	0	0	0.56
330389--331007	35	18.4	35	75	15	313	21	31	12	34	1.90
330378--330734	102	3.6	98	77	13	313	21	30	12	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330389--330742	167	2.1	164	83	6	430	21	30	13	34	1.92
330718--330776	27	2.2	27	90	0	91	20	30	13	35	1.91
330456--331017	97	5.6	98	76	12	341	20	32	12	34	1.90
330750--331022	37	7.7	35	80	9	279	20	32	12	34	1.90
330750--331005	71	3.6	71	87	4	340	20	33	11	34	1.88
330648--331022	71	5.4	69	81	10	322	20	32	12	35	1.89
331054--331727	49	13.9	49	83	4	841	23	25	18	32	1.97
331054--331728	239	2.8	239	89	2	999	23	25	18	32	1.97
332496--332551	13	3.8	13	75	24	58	37	14	16	32	1.88
332510--332570	19	3.6	18	72	25	60	36	13	14	36	1.85
332497--332578	32	2.6	32	96	0	146	35	13	15	35	1.87
332622--332648	13	2.1	13	100	0	54	29	14	14	40	1.86
337261--337293	13	2.5	13	95	0	57	33	18	15	33	1.92
337353--337396	20	2.2	20	88	4	63	43	20	13	22	1.87
337347--337396	19	2.6	19	83	3	64	40	18	14	28	1.89
339298--339354	19	2.9	19	84	2	78	33	15	17	33	1.92
345714--345763	21	2.4	22	83	9	61	32	20	0	48	1.50
348085--348111	13	2.1	13	100	0	54	29	14	14	40	1.86
348097--348173	20	3.9	20	79	3	84	36	12	15	35	1.86
348200--348253	20	2.7	19	88	11	74	31	14	18	35	1.91
354090--354229	70	2.0	70	92	0	235	38	13	27	20	1.90
355333--355361	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362639--362668	2	15.0	2	100	0	60	50	50	0	0	1.00
362942--362967	2	13.0	2	100	0	52	0	0	50	50	1.00
370958--371035	37	2.1	37	83	4	95	25	19	6	48	1.72
371470--371519	21	2.4	21	86	3	66	32	10	18	40	1.83
374786--374840	20	2.8	20	88	5	76	40	12	14	32	1.84
379059--379099	20	2.0	21	90	9	66	48	7	4	39	1.52
379789--379873	36	2.5	35	84	7	104	32	9	24	32	1.87
379789--379881	32	2.8	35	79	12	106	34	9	23	32	1.87
381391--381430	21	1.9	21	89	0	62	55	0	27	17	1.43
381426--381465	21	1.9	21	85	10	55	57	5	12	25	1.55
383785--383980	98	2.0	99	89	1	304	33	4	29	32	1.78
384640--384678	19	2.0	20	90	10	62	48	7	7	35	1.61
384771--384820	19	2.5	20	77	3	57	30	14	16	40	1.87
384868--384921	20	2.7	20	97	0	99	31	11	20	37	1.88
385351--385438	36	2.6	36	87	7	121	31	13	23	30	1.93
389396--390113	368	2.0	364	88	3	1066	43	10	11	34	1.75
391167--391219	25	2.0	25	82	7	61	15	5	1	77	1.04
391182--391217	17	2.1	17	89	0	54	16	2	0	80	0.83
394633--394673	18	2.3	18	95	0	73	36	24	19	19	1.95
394809--394858	20	2.5	20	90	0	73	40	10	22	28	1.86
395018--395069	20	2.5	20	84	3	68	34	17	9	38	1.82
400447--400791	154	2.2	156	81	3	410	36	17	19	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401118--401404	142	2.0	142	85	3	391	44	10	9	36	1.70
407045--407069	13	1.9	13	100	0	50	36	16	16	32	1.90
407023--407088	19	3.8	19	72	25	65	33	12	15	39	1.84
407027--407093	32	2.1	33	94	2	118	35	11	16	35	1.86
408024--408073	14	3.4	15	78	18	52	76	0	22	2	0.89
408021--408077	10	5.4	10	80	17	62	78	0	19	1	0.83
410373--410440	19	3.9	19	78	21	85	35	11	14	38	1.83
410394--410418	13	1.9	13	100	0	50	36	16	16	32	1.90
410375--410437	32	2.0	32	96	0	117	34	12	15	36	1.86
410480--410505	13	2.0	13	100	0	52	30	15	15	38	1.88
410460--410526	33	2.0	33	88	0	98	25	14	16	43	1.86
412344--412621	51	5.4	53	80	4	264	30	24	11	33	1.90
412344--412621	105	2.7	102	77	5	272	30	24	11	33	1.90
412635--412708	28	2.6	28	100	0	148	21	36	22	18	1.95
414577--414627	20	2.5	20	77	3	57	76	0	21	1	0.88
417232--417256	13	1.9	13	100	0	50	32	16	16	36	1.90
417265--417381	52	2.2	52	96	0	216	35	16	17	30	1.92
433127--433593	154	3.0	149	77	7	454	32	7	7	52	1.58
433189--433593	153	2.6	153	79	5	451	32	6	8	52	1.56
433599--433640	16	2.7	15	79	13	50	30	14	2	52	1.54
434278--434328	21	2.4	21	96	0	93	5	7	21	64	1.41
435499--435819	157	2.1	154	83	4	394	25	15	19	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435822--436283	150	3.0	155	78	5	468	25	15	18	40	1.89
435815--436324	157	3.3	154	77	6	467	25	14	18	40	1.89
439947--440006	7	8.6	7	74	7	59	78	1	13	6	1.02
439947--439985	20	2.0	20	89	0	60	82	0	12	5	0.83
439932--440006	29	2.6	27	79	10	78	77	1	14	6	1.04
440595--440806	111	1.9	111	83	5	277	30	13	16	39	1.87
441322--441432	44	2.5	45	70	11	104	20	11	13	54	1.70
441319--441606	87	3.3	86	78	4	274	22	14	13	49	1.78
442388--442484	51	1.9	51	85	4	133	28	15	10	45	1.79
446287--446489	76	2.7	75	85	2	253	26	15	13	44	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12