genome.fa.s475.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold475
Parameters: 2 7 7 80 10 50 1000
Length:  1773841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1353 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446300--446558	76	3.4	75	79	9	217	27	16	12	43	1.84
447443--447506	32	2.0	33	87	3	94	39	15	14	31	1.87
448249--449157	65	13.9	65	77	5	740	16	22	17	43	1.88
448249--449154	195	4.6	194	79	4	858	16	22	17	43	1.88
448825--448985	33	4.9	32	67	17	98	15	23	20	40	1.91
449114--449191	32	2.4	32	80	4	86	16	21	14	47	1.82
452493--452547	20	2.8	20	85	0	74	41	14	10	32	1.81
452391--452528	51	2.7	50	82	2	177	40	12	15	31	1.85
453173--453297	49	2.7	46	82	7	153	32	21	24	20	1.98
453375--453563	28	6.4	31	83	5	107	22	17	31	27	1.97
453427--453922	28	17.5	28	86	4	609	21	16	31	29	1.96
455171--455232	22	2.7	23	90	7	99	4	1	11	82	0.89
468516--468544	14	2.0	15	93	6	51	6	0	20	72	1.07
469027--469081	20	2.8	20	86	8	76	41	14	9	34	1.77
469096--469151	19	2.8	20	89	2	87	44	12	10	32	1.77
469027--469161	70	1.9	71	90	1	218	42	13	13	30	1.82
469653--469719	33	2.0	33	88	5	100	16	17	19	46	1.85
471493--471535	21	2.0	21	86	8	61	25	9	9	55	1.61
471562--471876	165	1.9	166	80	5	370	34	10	13	40	1.80
472059--472536	155	3.1	153	77	9	484	27	12	18	41	1.86
472646--472695	20	2.5	21	83	9	68	42	16	10	32	1.81
472717--472756	20	2.0	20	95	0	71	40	12	15	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474480--474556	28	2.8	27	86	9	102	28	16	31	23	1.96
474545--474718	52	3.4	51	78	9	165	33	11	24	31	1.91
474543--474763	51	4.3	51	80	6	196	33	11	24	29	1.91
474696--474871	79	2.2	79	87	4	257	31	16	26	25	1.96
474883--475006	51	2.4	51	82	5	133	34	11	23	30	1.90
477367--477392	13	2.0	13	100	0	52	38	15	15	30	1.88
477346--477410	34	1.9	33	90	3	103	44	12	16	26	1.83
477444--477497	21	2.7	20	77	8	65	38	14	12	33	1.85
477552--477609	21	2.8	21	97	0	107	37	18	10	32	1.85
479284--479336	27	2.0	26	88	3	79	30	15	28	26	1.96
481727--481862	52	2.6	52	82	5	161	44	12	13	29	1.80
484392--484466	38	1.9	38	84	7	98	37	10	10	41	1.75
487089--487256	84	2.0	85	86	1	239	36	15	19	29	1.92
487920--487977	19	2.9	19	82	5	71	34	15	15	34	1.89
488022--488052	13	2.4	13	94	0	53	35	16	12	35	1.87
488006--488072	33	2.0	32	88	11	100	35	13	17	32	1.89
494232--494282	13	3.9	13	94	0	84	35	13	15	35	1.87
494403--494443	22	1.9	21	85	14	57	31	19	0	48	1.49
496110--496203	19	4.5	22	80	15	128	36	1	37	25	1.63
496110--496203	41	2.3	41	96	0	170	36	1	37	25	1.63
496816--496846	13	2.4	13	94	0	53	35	16	12	35	1.87
496800--496866	33	2.0	32	88	11	100	35	13	17	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502425--502561	52	2.6	52	89	0	211	44	15	14	25	1.84
502526--502563	20	1.9	20	94	0	67	55	10	7	26	1.61
502602--502653	20	2.5	21	87	3	70	30	15	13	40	1.86
506593--506767	95	1.8	95	96	0	323	40	11	12	36	1.78
507583--507632	19	2.6	19	80	3	55	30	18	14	38	1.89
508634--508667	18	1.9	18	94	5	61	61	11	14	11	1.56
510371--510426	21	2.7	21	94	0	94	37	8	16	37	1.80
510485--510509	13	1.9	13	100	0	50	36	16	16	32	1.90
510465--510528	32	2.0	33	96	3	121	34	12	18	34	1.89
510464--510547	19	4.7	19	78	18	99	33	13	17	35	1.89
510623--510751	52	2.5	52	90	0	213	34	16	20	29	1.94
517990--518064	20	3.8	20	80	3	80	40	12	13	34	1.81
517987--518064	40	2.0	39	87	2	111	39	12	12	34	1.82
521448--521488	21	1.9	22	90	5	66	87	9	2	0	0.62
522495--522802	66	4.6	66	82	6	315	19	34	13	32	1.91
522492--522785	34	8.8	34	80	7	307	19	33	13	33	1.90
522495--522785	100	2.9	101	84	7	387	18	34	13	33	1.91
522778--522848	33	2.2	32	82	12	90	28	32	19	19	1.97
522874--522941	21	3.2	21	66	25	61	26	27	17	27	1.98
522853--523077	43	5.1	43	87	6	333	25	24	18	31	1.98
522853--523130	92	3.0	91	90	5	413	25	24	17	32	1.97
523028--523168	52	2.6	53	83	3	167	24	24	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523830--523886	13	3.9	13	76	24	60	35	14	17	33	1.90
523810--523910	32	3.1	32	95	1	175	35	11	16	35	1.86
523808--523905	19	5.8	18	70	28	81	34	12	16	36	1.86
523948--523975	13	2.2	13	100	0	56	28	14	17	39	1.89
523981--524109	52	2.5	52	97	0	240	34	17	18	28	1.94
527098--527264	61	2.8	58	79	6	172	34	13	25	26	1.93
527109--527264	60	2.6	61	81	3	172	35	12	25	25	1.92
527215--527788	52	10.8	51	74	5	358	37	15	23	24	1.93
527223--527794	104	5.4	104	74	8	395	37	15	23	23	1.93
527312--527530	113	1.9	113	82	5	273	39	14	22	23	1.91
527143--527639	216	2.3	216	83	2	595	38	14	23	23	1.92
527469--527756	155	1.8	158	83	7	381	38	14	23	23	1.92
527840--528018	32	5.5	32	77	12	143	22	15	31	30	1.95
527856--528018	64	2.5	64	83	6	177	22	16	30	30	1.96
528951--528980	13	2.3	13	94	0	51	30	13	13	43	1.82
528933--528998	33	2.0	33	91	5	107	27	13	15	43	1.84
531358--531532	51	3.5	51	80	2	201	27	24	12	36	1.91
531523--531596	28	2.7	27	89	8	105	22	31	21	24	1.99
531472--531750	107	2.6	107	85	2	380	27	25	15	31	1.95
531630--531703	28	2.7	28	79	6	89	22	29	21	25	1.99
531686--531804	52	2.3	52	85	7	163	31	26	10	31	1.90
531737--531957	80	2.8	80	85	2	293	28	23	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538498--538693	79	2.5	79	83	1	223	30	15	27	26	1.96
538574--538773	107	1.9	108	82	3	260	29	15	27	28	1.96
538708--538840	52	2.6	51	83	3	167	32	10	26	30	1.90
541032--541057	13	2.0	13	100	0	52	38	15	15	30	1.88
541044--541085	21	2.0	21	95	0	75	28	21	9	40	1.84
541248--541272	9	2.8	9	100	0	50	12	0	0	88	0.53
542123--542534	55	7.4	54	85	5	529	22	20	29	27	1.99
541993--542530	170	3.1	169	88	4	744	23	21	28	26	1.99
542001--542510	225	2.2	228	88	3	742	23	20	29	26	1.99
542420--542510	29	3.2	28	70	14	89	23	17	30	28	1.97
543602--543658	11	5.0	11	83	10	53	3	7	3	85	0.80
543604--543658	24	2.3	23	84	3	65	3	5	3	87	0.75
555281--555479	79	2.5	79	81	3	213	31	17	26	25	1.97
555431--555502	28	2.6	28	88	0	99	22	19	34	23	1.96
555511--555611	51	1.9	54	86	9	147	34	12	24	27	1.92
557868--557893	13	2.0	13	100	0	52	38	15	15	30	1.88
557880--557920	21	2.0	21	90	0	64	31	19	9	39	1.84
557946--557999	21	2.7	20	77	8	65	38	14	12	33	1.85
558087--558120	17	1.9	18	94	5	61	11	0	0	88	0.52
558084--558127	13	3.4	13	84	6	54	11	0	2	86	0.66
558126--558154	14	2.1	14	100	0	58	41	20	6	31	1.79
559847--559878	12	2.8	12	95	4	57	6	0	6	87	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567266--567446	60	3.0	60	100	0	362	43	15	14	26	1.86
568353--568545	96	2.0	96	98	0	377	31	12	27	29	1.93
571557--571663	32	3.4	32	90	2	171	34	14	15	34	1.89
572476--572747	52	5.4	48	80	7	186	33	16	26	23	1.96
572559--573109	87	6.0	88	86	6	667	30	18	26	25	1.98
572716--572960	39	5.8	39	73	16	193	27	20	25	26	1.99
572752--573112	48	7.9	48	82	10	443	29	18	25	25	1.98
573061--573293	75	3.1	75	94	0	412	35	15	27	22	1.94
573289--573351	29	2.1	30	91	2	101	31	15	26	25	1.96
578572--578599	13	2.2	13	100	0	56	28	14	17	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12