genome.fa.s48.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold48
Parameters: 2 7 7 80 10 50 1000
Length:  4619657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  18  of  27  ( 3212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2607557--2607670	26	4.3	26	75	10	88	56	0	0	42	1.05
2607540--2607694	11	14.1	11	66	16	54	58	1	0	40	1.06
2607663--2607694	13	2.6	13	90	9	50	62	3	0	34	1.11
2610899--2610945	19	2.5	18	80	10	58	40	0	0	59	0.97
2611580--2611633	22	2.5	22	84	6	56	55	5	1	37	1.34
2613223--2613393	93	1.8	93	91	2	281	31	16	19	32	1.94
2614530--2614594	16	4.0	16	75	14	62	49	4	1	44	1.32
2614523--2614602	35	2.3	35	84	4	99	50	3	1	45	1.28
2614540--2614609	35	2.0	35	94	0	122	48	2	1	47	1.25
2614541--2614634	35	2.7	34	85	8	111	46	2	2	48	1.25
2617644--2617702	29	2.0	29	96	0	109	18	10	27	44	1.82
2617647--2617709	29	2.2	29	91	0	99	20	11	22	46	1.82
2618786--2618845	2	30.0	2	100	0	120	0	50	0	50	1.00
2621450--2621516	5	12.6	5	80	12	71	25	1	0	73	0.92
2621437--2621511	39	1.9	39	86	10	109	26	1	0	72	0.93
2621449--2621512	33	2.0	31	87	6	92	26	1	0	71	0.94
2621433--2621517	11	7.5	11	74	18	68	27	1	0	71	0.93
2621948--2621983	2	18.5	2	88	5	56	50	2	0	47	1.15
2625171--2625230	16	3.8	16	78	18	63	43	0	0	56	0.99
2625177--2625234	17	3.4	17	74	25	59	43	0	0	56	0.99
2625208--2625267	29	2.0	29	90	9	93	40	0	0	60	0.97
2628745--2628813	7	9.4	7	79	14	68	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2628730--2628814	22	3.9	22	76	13	77	49	0	0	50	1.00
2628739--2628807	30	2.3	30	87	5	95	49	0	0	50	1.00
2629127--2629157	2	15.5	2	100	0	62	51	0	0	48	1.00
2630209--2630251	13	3.5	13	78	21	56	32	0	0	67	0.91
2630193--2630257	10	6.4	10	72	22	55	33	1	0	64	1.03
2630189--2630248	31	1.9	31	86	0	84	31	1	0	66	1.01
2630228--2630265	20	1.9	20	88	0	58	47	0	0	52	1.00
2630315--2630348	1	34.0	1	87	0	50	0	5	0	94	0.32
2630672--2630716	21	2.1	21	84	8	56	33	2	0	64	1.06
2630779--2630852	5	15.2	5	70	16	57	39	1	1	58	1.15
2630782--2630838	9	6.0	10	79	6	57	42	0	0	57	0.98
2630758--2630839	18	4.9	18	72	14	61	46	1	0	52	1.08
2630779--2630853	34	2.2	33	83	4	87	38	1	1	58	1.15
2636503--2636555	5	11.2	5	73	18	51	37	0	0	62	0.96
2636505--2636560	13	4.5	13	76	17	64	35	0	0	64	0.94
2636502--2636561	24	2.5	25	81	13	72	36	0	0	63	0.95
2642986--2643044	30	2.0	30	96	0	109	47	0	1	50	1.11
2643194--2643223	15	2.0	15	93	0	51	43	0	0	56	0.99
2643904--2643936	17	2.0	16	94	5	57	42	0	0	57	0.98
2644194--2644230	2	18.5	2	100	0	74	51	0	0	48	1.00
2644231--2644259	2	14.5	2	100	0	58	51	0	48	0	1.00
2647039--2647091	27	2.0	27	92	0	88	22	24	33	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2648519--2648574	14	3.9	14	76	4	58	55	1	0	42	1.10
2648536--2648579	14	3.1	14	78	15	54	47	0	0	52	1.00
2648763--2648841	25	3.2	25	79	15	92	54	0	0	45	0.99
2650801--2650878	36	2.2	34	82	8	86	37	1	3	57	1.25
2652576--2652614	11	3.5	11	82	6	51	30	0	0	69	0.89
2652628--2652674	24	2.0	24	84	8	62	40	6	0	53	1.27
2652669--2652734	28	2.4	27	75	9	71	60	3	0	36	1.12
2652664--2652704	21	1.9	22	90	5	66	68	2	0	29	1.03
2657561--2657738	73	2.4	73	83	3	212	40	5	7	46	1.55
2658775--2658815	20	2.1	19	86	4	55	60	2	2	34	1.23
2660710--2660753	22	2.0	23	81	4	54	38	2	9	50	1.47
2660783--2660823	19	2.1	20	82	13	50	65	0	4	29	1.13
2661023--2661048	6	4.3	6	100	0	52	84	0	15	0	0.62
2661345--2661373	15	1.9	15	100	0	58	41	10	0	48	1.37
2661477--2661512	18	2.1	17	89	5	54	41	0	0	58	0.98
2661468--2661522	25	2.3	22	81	12	56	40	0	0	60	0.97
2661874--2661907	2	17.0	2	93	0	59	50	2	0	47	1.16
2663245--2663291	2	23.5	2	95	0	85	48	2	0	48	1.13
2666475--2666503	14	2.0	15	93	6	51	31	0	0	68	0.89
2667229--2667299	27	2.7	26	81	12	74	35	0	0	64	0.94
2667241--2667308	19	3.4	19	75	15	66	29	0	0	70	0.87
2667247--2667308	22	2.8	23	72	16	58	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2668506--2668543	20	1.9	20	94	0	67	42	5	5	47	1.48
2673421--2673468	19	2.6	19	83	6	55	52	2	0	45	1.12
2674527--2674609	33	2.5	33	78	5	89	21	8	4	65	1.39
2674583--2674623	21	1.9	22	90	5	66	21	12	0	65	1.25
2674583--2674630	22	2.2	21	85	3	60	22	10	0	66	1.22
2675002--2675058	2	28.5	2	100	0	114	50	0	0	49	1.00
2676050--2676082	2	16.5	2	100	0	66	51	0	0	48	1.00
2679358--2679417	21	2.8	21	80	12	68	35	0	3	61	1.12
2679351--2679499	11	14.5	10	69	20	62	33	0	2	63	1.10
2679450--2679497	26	1.9	24	87	8	69	27	2	0	70	0.98
2683327--2683352	10	2.6	10	100	0	52	46	0	0	53	1.00
2684886--2684925	2	19.5	2	90	10	55	45	5	0	50	1.23
2686348--2686394	14	3.3	15	80	14	55	59	0	0	40	0.97
2692186--2692212	13	2.1	13	100	0	54	48	7	22	22	1.75
2694133--2694172	17	2.5	16	84	11	55	55	0	2	42	1.13
2694133--2694175	16	2.6	17	80	20	56	53	0	2	44	1.13
2694150--2694201	27	1.9	27	84	7	70	51	0	1	46	1.12
2694335--2694391	20	3.0	20	80	14	57	54	0	1	43	1.10
2695131--2695176	22	2.1	22	87	0	65	56	13	10	19	1.66
2695206--2695250	22	2.2	19	84	15	54	66	0	0	33	0.92
2695192--2695260	23	2.8	25	77	20	67	65	2	0	31	1.08
2695275--2695332	8	6.6	8	81	15	53	5	15	0	79	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2695275--2695332	19	3.3	18	78	7	66	5	15	0	79	0.90
2695409--2695434	3	8.7	3	100	0	52	34	0	0	65	0.93
2701914--2701953	15	2.7	15	92	3	64	52	0	2	45	1.14
2710288--2710501	117	1.8	116	82	3	277	20	24	21	34	1.97
2711239--2711277	20	1.9	21	84	5	53	33	0	2	64	1.08
2711550--2711574	2	12.5	2	100	0	50	52	0	0	48	1.00
2721159--2721190	2	16.0	2	100	0	64	50	0	0	50	1.00
2721642--2721737	50	1.9	50	91	0	156	26	19	8	45	1.78
2721951--2721986	19	1.9	19	88	5	56	55	2	0	41	1.14
2723288--2723342	24	2.3	24	96	3	103	52	7	18	21	1.69
2726893--2726971	9	8.1	10	71	23	62	30	0	0	69	0.89
2726896--2726989	11	8.5	11	77	16	81	34	0	1	64	1.00
2727282--2727316	14	2.6	14	90	4	54	34	0	0	65	0.93
2729582--2729631	11	4.5	11	78	9	57	60	0	0	40	0.97
2729581--2729634	22	2.5	21	78	6	63	59	0	0	40	0.98
2730121--2730152	2	16.0	2	100	0	64	50	0	0	50	1.00
2740289--2740385	2	48.0	2	75	11	74	47	5	43	4	1.44
2740262--2740383	63	1.9	63	93	0	208	45	9	39	6	1.62
2751946--2751981	18	1.9	19	88	5	56	41	8	2	47	1.48
2752671--2752712	14	3.0	14	82	6	50	35	0	0	64	0.94
2752668--2752713	18	2.4	19	82	10	58	39	0	0	60	0.97
2752627--2752781	71	2.2	72	92	3	260	41	3	1	52	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2753889--2753946	20	2.9	21	80	12	59	48	0	0	51	1.00
2753960--2754006	11	4.4	11	76	15	53	53	0	0	46	1.00
2755428--2755453	2	13.0	2	100	0	52	50	0	0	50	1.00
2768619--2768651	2	16.5	2	100	0	66	51	0	0	48	1.00
2774411--2774449	2	19.5	2	100	0	78	51	0	0	48	1.00
2778229--2778257	2	15.0	2	92	7	51	51	0	0	48	1.00
2781466--2781539	34	2.2	34	87	2	114	33	22	16	27	1.95
2781930--2781955	4	6.5	4	100	0	52	50	23	0	26	1.50
2794324--2794371	24	2.0	25	91	4	80	29	0	22	47	1.51
2795815--2795844	2	15.0	2	92	0	51	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27