genome.fa.s48.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold48
Parameters: 2 7 7 80 10 50 1000
Length:  4619657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  27  of  27  ( 3212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4498950--4498995	1	46.0	1	91	0	74	95	4	0	0	0.26
4502991--4503029	16	2.5	16	91	4	62	30	7	12	48	1.69
4505212--4505257	23	2.0	23	100	0	92	30	17	4	47	1.67
4508101--4508142	20	2.1	20	91	8	68	66	0	0	33	0.92
4508546--4508602	27	2.1	28	83	3	71	52	1	1	43	1.21
4508879--4508903	2	12.5	2	100	0	50	48	0	0	52	1.00
4510590--4510621	2	16.0	2	93	0	55	50	3	0	46	1.17
4514634--4514670	19	1.9	19	88	0	56	70	2	0	27	1.01
4514631--4514700	36	2.0	33	86	8	95	64	2	0	32	1.08
4514642--4514700	19	3.2	19	80	9	77	61	3	0	35	1.13
4514756--4514868	26	4.3	28	77	11	91	67	3	0	29	1.07
4514760--4514801	16	2.5	17	78	14	52	71	2	0	26	0.98
4514784--4514852	30	2.4	30	79	15	76	66	2	0	30	1.06
4514881--4514937	8	7.0	8	85	2	69	0	21	0	78	0.74
4514885--4514935	4	12.8	4	80	15	61	0	21	0	78	0.75
4516178--4516220	12	3.4	12	80	6	50	58	0	0	41	0.98
4516171--4516220	25	2.0	26	84	11	68	58	0	0	42	0.98
4516267--4516336	32	2.2	32	80	12	81	64	5	0	30	1.17
4516242--4516327	33	2.4	36	83	11	97	62	3	0	33	1.12
4526947--4526982	4	9.2	4	93	6	65	0	27	22	50	1.50
4527593--4527627	2	17.5	2	100	0	70	48	0	0	51	1.00
4527978--4528008	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4533899--4533928	2	15.0	2	100	0	60	50	0	50	0	1.00
4536112--4536139	2	14.0	2	100	0	56	50	0	0	50	1.00
4541188--4541219	2	16.0	2	93	0	55	46	0	53	0	1.00
4546555--4546590	2	18.0	2	100	0	72	50	50	0	0	1.00
4550169--4550198	2	15.5	2	93	6	53	46	0	0	53	1.00
4552687--4552743	29	2.0	29	89	0	87	43	3	0	52	1.18
4553428--4553492	19	3.8	18	71	24	68	33	12	15	38	1.85
4553430--4553500	32	2.2	32	92	0	124	33	12	16	36	1.87
4553568--4553692	52	2.4	52	84	0	178	35	16	17	30	1.93
4554528--4554568	21	1.9	22	90	5	66	21	17	17	43	1.87
4555214--4555238	13	1.9	13	100	0	50	32	16	16	36	1.90
4555247--4555374	51	2.5	52	92	2	222	34	17	19	28	1.94
4559316--4559372	27	2.1	27	86	0	78	28	42	1	28	1.66
4559673--4559928	75	3.3	75	78	16	291	32	7	20	39	1.81
4559706--4559869	88	1.9	87	93	1	283	33	7	20	38	1.81
4560721--4560764	2	22.0	2	100	0	88	0	50	0	50	1.00
4564167--4564218	2	26.0	2	84	0	68	48	5	1	44	1.38
4564515--4564557	2	21.5	2	90	0	68	0	44	4	51	1.22
4564559--4564597	2	19.5	2	89	0	60	43	0	2	53	1.14
4567187--4567319	44	3.0	44	84	0	176	51	4	3	40	1.37
4570863--4570898	3	12.0	3	100	0	72	33	0	0	66	0.92
4570937--4570971	2	17.5	2	100	0	70	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4571269--4571312	22	2.0	23	90	4	72	50	9	0	40	1.34
4571998--4572026	2	15.0	2	92	7	51	48	0	0	51	1.00
4580964--4581019	29	1.9	29	88	0	85	23	25	12	39	1.89
4583247--4583280	2	17.5	2	93	6	61	52	0	0	47	1.00
4583895--4583985	38	2.2	40	83	12	107	45	0	0	54	0.99
4583984--4584032	20	2.5	20	80	6	55	53	0	2	44	1.12
4586215--4586248	6	5.7	6	92	0	59	14	14	38	32	1.87
4593832--4593886	20	2.7	21	83	5	69	30	3	7	58	1.43
4594158--4594207	9	5.4	9	86	9	57	78	0	20	2	0.86
4594147--4594208	18	3.3	18	76	14	63	75	0	20	3	0.94
4594162--4594208	24	2.0	24	87	8	69	78	0	19	2	0.85
4594300--4594364	11	6.2	11	68	22	50	29	1	1	67	1.09
4594297--4594376	23	3.7	22	76	14	78	28	1	1	68	1.05
4594570--4594604	16	2.1	16	89	5	52	68	0	0	31	0.90
4595205--4595261	23	2.6	22	78	8	71	35	0	0	64	0.93
4595187--4595245	29	2.0	29	84	12	77	32	0	1	66	1.02
4597239--4597274	2	18.0	2	100	0	72	50	0	0	50	1.00
4606818--4606854	4	9.2	4	100	0	74	51	24	0	24	1.49
4608863--4608933	27	2.6	27	86	8	92	12	16	45	25	1.83
4609124--4609238	39	2.9	39	90	0	167	16	5	51	26	1.66
4609154--4609238	21	4.2	21	73	8	77	16	4	51	27	1.64
4609144--4609239	18	5.0	18	71	14	75	16	4	50	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4609117--4609247	21	6.5	21	67	18	64	14	4	51	29	1.62
4609448--4609477	4	7.8	4	92	7	53	76	0	0	23	0.78
4611073--4611354	74	3.8	74	76	18	239	2	13	52	32	1.52
4611365--4611456	1	92.0	1	95	0	166	1	0	97	1	0.17
4611467--4611794	48	6.9	47	80	14	317	0	14	54	30	1.46
4611466--4611793	92	3.5	91	80	14	357	0	14	54	30	1.46
4611046--4611794	7	106.7	7	79	16	470	1	11	59	27	1.42
4611790--4613010	121	10.2	118	80	13	765	9	5	41	42	1.62
4611799--4612468	53	12.5	52	78	15	537	14	0	41	42	1.52
4614358--4615088	46	16.2	45	72	20	172	6	14	39	39	1.71
4614701--4614748	25	1.9	25	87	8	71	12	12	35	39	1.81
4615299--4615485	15	12.5	15	77	16	101	4	14	40	41	1.65
4615857--4615896	17	2.4	17	87	8	55	7	2	55	35	1.42
4615871--4615951	31	2.6	32	80	5	85	4	4	53	37	1.44
4616021--4616054	18	1.9	18	94	5	61	2	0	50	47	1.16
4611477--4619215	7	1034.3	7	74	19	4274	6	12	40	39	1.70
4616071--4619213	15	201.9	16	70	22	423	6	14	39	39	1.72
4616605--4616727	22	5.3	25	81	11	90	4	13	41	40	1.64
4616820--4617163	137	2.5	135	76	17	322	4	16	39	39	1.70
4616071--4619213	23	141.1	20	70	22	425	6	14	39	39	1.72
4619300--4619364	22	3.0	22	82	13	64	10	78	1	9	1.03
4619315--4619357	14	3.1	14	81	18	54	6	81	0	11	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4619371--4619485	21	5.5	21	76	13	112	22	64	0	13	1.28
4619437--4619500	14	4.5	14	75	11	58	14	71	0	14	1.14
4619411--4619499	7	12.6	7	72	17	51	16	69	0	13	1.19
4619593--4619657	25	2.8	22	78	15	67	20	67	0	12	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27

The End!