genome.fa.s498.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold498
Parameters: 2 7 7 80 10 50 1000
Length:  1804022

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  4  of  17  ( 1953 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283552--283601	23	2.1	23	82	10	57	48	0	0	52	1.00
283736--283830	19	5.0	19	69	19	65	40	0	1	58	1.05
283713--283801	36	2.5	35	79	13	94	35	0	1	62	1.02
283752--283800	21	2.4	20	83	10	55	32	0	2	65	1.04
283865--283903	15	2.6	15	88	8	53	25	2	0	71	0.98
283865--283903	19	2.1	19	85	9	53	25	2	0	71	0.98
288808--288880	30	2.4	30	79	0	83	21	45	23	9	1.81
288805--288884	36	2.2	36	84	0	97	23	43	23	8	1.81
288889--288921	3	11.0	3	100	0	66	66	33	0	0	0.92
294775--294820	3	15.7	3	88	4	67	26	0	2	71	0.97
294942--294995	26	2.0	27	89	3	83	48	1	0	50	1.11
295140--295202	15	4.1	15	73	17	58	50	0	0	49	1.00
296349--296403	29	1.9	28	81	3	65	56	1	0	41	1.10
296692--296730	19	2.1	18	85	4	51	48	0	0	51	1.00
296862--296945	16	5.1	15	75	18	62	63	0	2	34	1.08
296875--296924	11	4.2	12	75	10	50	64	0	2	34	1.05
296878--296925	17	2.9	16	81	3	51	60	0	2	37	1.09
296883--296932	8	6.4	8	77	13	50	62	0	0	38	0.96
298142--298184	22	1.9	22	86	13	61	62	0	0	37	0.95
298157--298185	14	2.0	15	93	6	51	62	0	0	37	0.96
298298--298339	17	2.5	17	80	7	50	50	2	0	47	1.14
298327--298400	27	2.8	28	75	6	73	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298443--298481	20	2.0	20	85	10	53	51	0	2	46	1.14
299554--299585	2	16.0	2	100	0	64	50	0	0	50	1.00
299777--299856	33	2.5	33	84	7	96	40	0	3	56	1.17
299770--299874	25	4.3	25	68	17	60	38	0	2	59	1.13
300254--300301	3	16.3	3	86	4	71	31	2	2	64	1.16
301485--301535	20	2.6	19	84	6	66	33	0	1	64	1.05
301512--301571	32	1.9	31	82	3	75	33	0	0	66	0.92
302120--302163	18	2.4	18	85	7	54	34	0	2	63	1.07
302114--302182	17	4.3	16	74	17	63	42	0	1	56	1.08
306473--306523	18	2.8	18	84	3	57	60	0	0	39	0.97
306545--306575	4	7.8	4	100	0	62	25	0	22	51	1.48
307264--307355	35	2.6	36	81	10	102	54	4	0	41	1.20
307698--307732	4	8.8	4	93	0	61	51	0	0	48	1.00
309057--309114	16	3.7	16	69	19	50	72	0	3	24	1.00
309085--309124	16	2.4	16	83	8	53	77	0	7	15	0.98
309540--309598	30	1.9	31	82	3	75	61	6	1	30	1.32
309600--309637	2	19.0	2	100	0	76	50	0	0	50	1.00
311107--311150	21	2.0	23	86	13	65	50	2	0	47	1.13
311505--311546	18	2.5	17	80	7	50	71	0	0	28	0.86
311794--311839	19	2.4	19	92	0	74	41	13	0	45	1.43
312581--312636	15	3.6	16	69	7	53	51	0	0	48	1.00
313419--313507	42	2.0	42	81	14	101	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317591--317637	19	2.5	19	79	3	60	46	0	0	53	1.00
318141--318224	44	1.9	44	80	9	100	51	3	0	45	1.18
319098--319138	3	13.7	3	100	0	82	31	0	0	68	0.90
329315--329353	13	3.1	13	81	7	53	48	0	0	51	1.00
329313--329367	25	2.3	24	82	14	69	49	0	0	50	1.00
329349--329398	18	2.6	19	84	12	66	66	0	0	34	0.92
330343--330369	2	13.5	2	100	0	54	48	0	0	51	1.00
332523--332548	11	2.4	11	100	0	52	34	0	0	65	0.93
332530--332585	29	2.0	28	82	3	67	42	0	0	57	0.99
332572--332621	17	3.0	17	76	2	57	62	2	2	34	1.18
332582--332627	22	2.1	22	84	8	58	58	2	2	36	1.22
332572--332669	30	3.0	32	78	14	94	57	1	1	40	1.12
332594--332689	30	3.2	30	77	12	99	58	1	0	40	1.05
333233--333275	22	2.0	22	85	0	59	34	0	2	62	1.08
333284--333329	25	1.9	23	86	8	65	47	0	0	52	1.00
333296--333354	30	1.9	32	89	6	95	49	0	0	50	1.00
333295--333367	31	2.4	29	82	11	83	50	0	0	49	1.00
335932--335956	4	6.2	4	100	0	50	52	0	0	48	1.00
336622--336652	5	6.2	5	92	0	53	19	22	0	58	1.40
336959--337045	12	8.0	11	70	22	51	35	2	0	62	1.08
336974--337045	23	3.2	23	75	11	60	33	2	0	63	1.08
339779--339822	23	2.0	23	87	12	67	31	2	0	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339755--339787	2	16.5	2	93	0	57	51	0	0	48	1.00
342197--342221	2	12.5	2	100	0	50	52	0	0	48	1.00
343467--343513	17	2.6	17	86	10	58	42	2	0	55	1.12
343472--343516	18	2.5	19	85	10	67	44	0	0	55	0.99
343496--343536	22	1.9	21	85	14	57	43	0	2	53	1.13
343573--343611	15	2.6	15	83	0	51	61	0	2	35	1.10
344083--344149	30	2.2	30	79	10	75	46	1	0	52	1.09
356182--356261	37	2.1	38	97	2	153	28	15	2	53	1.54
359678--359726	21	2.5	19	83	9	62	44	0	6	48	1.27
359924--359955	14	2.2	15	94	5	57	50	0	0	50	1.00
368986--369055	26	2.7	26	74	12	72	52	0	0	47	1.00
369132--369166	18	2.0	18	88	5	54	54	2	0	42	1.15
369104--369156	21	2.5	22	73	8	58	50	0	0	49	1.00
369923--369974	18	2.8	18	73	2	50	42	1	0	55	1.10
370846--370906	11	6.0	11	77	14	51	62	0	1	36	1.05
370929--370979	15	3.5	15	74	12	52	58	1	0	39	1.09
372310--372403	24	3.7	24	74	18	82	45	1	0	53	1.07
372293--372356	24	2.7	23	83	9	76	46	1	0	51	1.10
372337--372384	18	2.7	18	77	3	53	45	0	0	54	0.99
372943--372976	17	2.0	17	88	0	50	52	0	0	47	1.00
374081--374154	24	3.0	27	78	16	74	50	0	0	50	1.00
377385--377425	21	2.0	21	85	9	57	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377408--377473	21	3.0	21	74	10	53	50	1	1	46	1.20
377442--377481	21	2.0	20	85	5	53	57	5	2	35	1.34
381675--381717	15	2.9	15	86	10	54	41	0	2	55	1.12
384838--384889	21	2.6	19	77	19	52	55	0	0	44	0.99
386629--386672	22	2.0	22	95	0	79	52	0	0	47	1.00
387056--387189	16	8.6	16	66	13	66	53	8	3	33	1.50
387453--387568	50	2.3	53	82	8	134	40	1	0	56	1.15
387489--387573	18	4.8	18	77	13	79	43	1	0	55	1.07
387762--387804	16	2.7	16	77	0	50	62	0	2	34	1.08
387859--387888	11	2.9	10	90	9	51	60	0	0	40	0.97
388668--388741	30	2.4	33	76	21	79	50	6	0	43	1.29
389044--389093	6	8.8	6	78	12	61	54	0	0	46	1.00
389047--389103	16	3.5	16	95	4	105	56	0	0	43	0.99
392598--392632	15	2.4	15	90	4	54	31	0	2	65	1.07
395842--395964	5	25.2	5	66	22	57	60	0	0	39	1.03
395819--395961	11	12.3	11	67	23	71	58	0	2	39	1.10
395896--395959	23	2.6	24	80	9	76	60	0	1	37	1.06
395842--395965	38	3.6	34	72	20	107	60	0	0	38	1.02
397340--397416	27	2.8	28	80	7	70	46	1	0	51	1.09
398567--398613	14	3.2	14	77	16	51	59	0	2	38	1.09
399084--399541	229	2.0	229	99	0	907	37	8	4	49	1.55
401778--401824	21	2.2	21	96	0	85	25	21	34	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404053--404081	2	14.5	2	100	0	58	0	48	0	51	1.00
406895--406943	11	4.4	11	80	12	55	36	0	2	61	1.08
408432--408466	5	7.0	5	100	0	70	80	0	0	20	0.72
408689--408743	22	2.6	21	82	11	67	41	0	0	58	0.98
408709--408751	14	2.9	15	79	6	52	34	0	0	65	0.93
408689--408751	29	2.2	29	80	5	74	38	0	0	61	0.96
411601--411646	19	2.4	21	82	13	55	43	8	0	47	1.34
411932--411988	25	2.2	26	87	9	82	56	0	0	43	0.99
412010--412102	32	2.8	33	79	11	102	54	0	0	45	0.99
412036--412078	21	2.0	22	82	13	54	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17