genome.fa.s498.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold498
Parameters: 2 7 7 80 10 50 1000
Length:  1804022

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  7  of  17  ( 1953 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593803--593871	34	2.0	34	100	0	138	53	17	8	20	1.69
598054--598110	19	3.1	19	78	9	57	49	0	0	50	1.00
598086--598130	24	1.9	23	86	4	63	55	0	0	44	0.99
599028--599069	20	2.2	20	87	8	61	59	0	0	40	0.97
599226--599271	21	2.1	23	84	8	60	63	2	0	34	1.07
600405--600476	31	2.3	30	77	13	83	45	0	0	54	0.99
600430--600489	17	3.5	17	73	8	50	41	0	0	58	0.98
600746--600788	22	2.0	22	85	0	59	55	0	2	41	1.12
609468--609505	19	2.0	19	89	0	58	36	0	0	63	0.95
613438--613468	14	2.1	15	94	5	55	41	3	6	48	1.45
613780--613881	50	2.1	50	82	12	122	47	0	0	52	1.00
616424--616454	2	15.5	2	100	0	62	51	0	0	48	1.00
617917--617964	25	2.0	25	87	4	71	43	0	0	56	0.99
618078--618102	10	2.5	10	100	0	50	0	8	0	92	0.40
618304--618338	16	2.2	16	90	10	54	0	11	2	85	0.69
622749--622780	15	2.1	15	100	0	64	43	6	18	31	1.75
628832--628864	3	11.0	3	100	0	66	33	0	0	66	0.92
629177--629237	10	5.5	11	72	12	54	49	0	0	50	1.00
629180--629237	24	2.6	22	81	13	75	46	0	0	53	1.00
629180--629218	11	3.1	14	82	17	50	43	0	0	56	0.99
630166--630206	3	13.7	3	100	0	82	34	0	0	65	0.93
631315--631423	30	3.7	30	76	6	107	44	7	2	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631302--631433	60	2.2	59	82	8	160	44	6	3	45	1.45
632473--632534	23	2.8	23	72	13	58	50	0	0	50	1.00
633545--633571	2	13.5	2	100	0	54	48	0	51	0	1.00
633879--633917	10	4.0	10	86	3	53	48	0	0	51	1.00
633885--633917	5	6.8	5	86	6	50	45	0	0	54	0.99
633963--634001	20	2.0	21	85	10	55	61	2	0	35	1.10
634473--634535	22	2.8	22	75	4	63	66	1	3	28	1.16
636044--636130	23	3.6	24	73	17	65	56	2	0	41	1.12
636044--636113	25	3.1	23	76	13	74	57	0	0	42	0.99
638538--638597	20	3.0	20	78	9	61	56	0	1	41	1.09
638505--638594	48	1.9	46	82	10	112	50	0	1	48	1.08
638611--638654	23	1.9	23	85	0	61	43	0	0	56	0.99
638616--638661	23	2.0	23	82	0	56	47	0	0	52	1.00
639344--639396	17	3.2	17	73	26	51	41	0	1	56	1.10
639827--639925	44	2.3	46	80	16	113	47	1	2	49	1.19
643403--643460	19	3.1	19	75	20	59	32	5	0	62	1.18
643415--643466	13	4.0	13	78	7	52	32	1	1	63	1.16
644179--644203	2	12.5	2	100	0	50	52	0	0	48	1.00
645612--645678	28	2.4	28	82	7	73	47	0	0	52	1.00
650492--650649	83	1.9	80	85	3	217	41	12	13	32	1.83
650572--651202	123	5.0	123	84	7	739	40	14	12	32	1.83
651829--651870	19	2.1	21	86	8	61	50	0	4	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653649--653696	25	2.0	24	84	12	62	45	4	0	50	1.21
655431--655549	60	2.0	60	91	0	193	39	6	7	46	1.59
656116--656156	5	8.0	5	83	5	55	41	2	0	56	1.13
656133--656321	16	11.6	16	68	12	82	52	4	1	41	1.29
656642--656685	2	22.0	2	100	0	88	50	0	0	50	1.00
657396--657448	25	2.2	24	83	6	63	37	0	3	58	1.16
657523--657579	28	2.0	29	89	0	73	57	12	7	22	1.58
658103--658155	27	2.0	26	85	10	72	56	0	1	41	1.10
658441--658508	14	4.4	15	71	23	52	50	0	0	50	1.00
658431--658508	32	2.6	29	79	18	81	48	0	0	51	1.00
660246--660295	25	2.0	25	96	0	91	52	10	0	38	1.35
660718--660772	5	10.4	5	81	14	58	58	0	0	41	0.98
661246--661288	19	2.3	19	87	0	68	46	0	0	53	1.00
662140--662192	27	1.9	27	84	3	70	62	3	1	32	1.24
662463--662495	2	16.5	2	100	0	66	48	0	0	51	1.00
665649--665712	30	2.1	31	88	2	94	62	3	0	34	1.11
666290--666322	2	16.5	2	100	0	66	48	0	0	51	1.00
666750--666782	14	2.2	16	89	10	52	60	3	0	36	1.12
667132--667158	2	13.5	2	100	0	54	48	0	0	51	1.00
668694--668750	8	6.9	8	78	11	53	49	0	0	50	1.00
668724--668771	10	4.8	10	77	10	53	35	0	0	64	0.94
668839--668865	8	3.4	8	100	0	54	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676579--676627	3	16.3	3	100	0	98	0	32	0	67	0.91
679266--679315	19	2.6	19	81	9	57	60	0	2	38	1.09
681818--681865	25	1.9	25	91	0	78	43	2	0	54	1.12
684463--684516	25	2.1	25	86	6	72	51	3	0	44	1.19
684915--684964	23	2.2	23	82	3	57	44	2	2	52	1.24
684925--684975	23	2.2	24	86	10	70	47	0	0	52	1.00
685274--685321	22	2.2	22	88	3	71	29	0	2	68	1.01
685998--686085	41	2.2	40	80	17	94	47	1	0	51	1.08
687305--687363	2	30.0	2	84	3	57	44	1	6	47	1.39
687622--687662	20	2.0	22	85	9	59	48	2	0	48	1.14
687645--687692	5	9.6	5	82	17	64	39	0	0	60	0.97
687645--687691	20	2.3	21	89	10	80	40	0	0	59	0.97
688380--688430	20	2.5	20	78	18	59	43	0	1	54	1.11
688883--688944	29	2.1	29	80	16	67	32	3	6	58	1.40
689977--690010	2	17.0	2	100	0	68	50	0	0	50	1.00
690479--690551	27	2.7	26	79	8	76	28	6	16	47	1.72
690537--690582	24	1.9	24	91	8	76	19	8	26	45	1.79
694709--694781	27	2.7	27	82	0	83	30	6	15	47	1.71
695687--695733	22	2.1	22	84	0	58	59	8	4	27	1.45
697313--697348	2	18.0	2	94	0	63	50	2	0	47	1.15
697323--697443	54	2.2	54	98	0	233	40	13	4	41	1.66
699184--699235	19	2.7	20	79	8	63	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699197--699243	19	2.3	19	85	10	58	40	0	0	59	0.97
700023--700070	14	3.4	14	85	5	69	33	0	0	66	0.92
700834--700909	33	2.3	33	86	8	102	55	1	0	43	1.08
701118--701162	24	2.0	22	91	8	72	55	0	0	44	0.99
701615--701685	28	2.5	30	84	10	89	57	1	0	40	1.07
702206--702277	22	3.1	22	80	13	83	43	0	0	56	0.99
702804--702861	16	3.4	16	75	13	53	60	1	0	37	1.07
703949--704001	24	2.1	26	82	6	65	64	1	1	32	1.15
704074--704158	44	1.9	44	88	4	127	44	16	3	35	1.65
704081--704158	23	3.4	23	72	15	63	47	16	3	32	1.65
704322--704346	2	12.5	2	100	0	50	52	0	0	48	1.00
704487--704514	2	14.0	2	100	0	56	50	0	0	50	1.00
704582--704619	14	2.5	16	83	12	53	55	0	0	44	0.99
705513--705559	7	6.6	7	79	13	51	46	0	0	53	1.00
706108--706195	21	4.0	21	78	21	99	44	0	0	55	0.99
706114--706190	23	3.2	26	63	30	69	45	0	0	54	0.99
706129--706218	21	3.6	26	76	22	102	48	0	0	51	1.00
706104--706241	47	2.9	48	90	6	210	50	0	0	50	1.00
706190--706239	20	2.7	18	76	11	57	58	0	0	42	0.98
706180--706244	25	2.6	25	72	15	64	53	0	0	46	1.00
706399--706433	3	11.7	3	93	0	61	34	0	2	62	1.10
707249--707301	2	26.5	2	100	0	106	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708433--708467	2	17.5	2	100	0	70	48	0	0	51	1.00
708725--708750	2	13.0	2	100	0	52	50	0	0	50	1.00
708988--709017	2	15.0	2	100	0	60	50	0	0	50	1.00
711374--711452	26	3.1	26	83	1	70	44	2	1	51	1.23
711385--711461	26	3.1	24	77	14	77	42	2	1	53	1.23
711433--711484	19	2.8	19	77	16	56	46	0	0	53	1.00
712527--712599	30	2.4	29	86	6	101	53	0	5	41	1.24
712581--712633	27	2.0	26	82	10	63	58	3	1	35	1.27
713112--713162	24	2.1	24	82	7	59	72	0	1	25	0.95
713114--713173	22	2.6	22	80	14	68	70	0	1	28	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17