genome.fa.s507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold507
Parameters: 2 7 7 80 10 50 1000
Length:  914714

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793--916	24	4.9	23	75	17	95	20	7	25	46	1.76
795--864	27	2.6	26	84	13	88	21	7	24	47	1.76
795--864	28	2.6	27	86	8	90	21	7	24	47	1.76
797--916	25	4.6	27	82	10	92	20	7	25	45	1.77
849--918	24	2.8	25	89	6	99	21	8	25	44	1.80
1794--1835	14	2.9	15	82	7	59	59	0	2	38	1.10
3314--3350	18	2.1	18	90	10	58	72	5	5	16	1.21
3408--3493	18	5.1	18	65	27	55	56	1	1	40	1.14
4696--4742	20	2.6	18	80	10	51	55	0	2	42	1.12
5234--5258	11	2.3	11	100	0	50	68	0	0	32	0.90
8946--8979	15	2.3	15	94	0	59	35	0	8	55	1.31
9319--9388	24	2.8	25	89	6	99	44	25	8	21	1.80
9373--9443	27	2.6	27	88	6	99	46	23	7	22	1.76
9321--9446	24	4.9	24	77	12	92	46	25	7	21	1.77
13967--14037	27	2.6	27	84	6	90	46	22	7	23	1.76
16675--16720	15	3.0	16	87	6	60	41	0	0	58	0.98
16691--16750	22	2.6	25	74	15	65	41	0	0	58	0.98
16689--16769	40	2.1	38	86	4	108	39	1	0	59	1.05
16683--16772	38	2.4	36	78	12	101	42	1	0	56	1.06
16823--16868	20	2.3	20	80	0	56	54	0	0	45	0.99
16946--16976	13	2.3	14	94	5	55	32	0	3	64	1.09
17031--17145	52	2.2	52	90	0	185	44	10	11	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18234--18335	43	2.3	44	76	17	106	48	0	1	50	1.12
18275--18339	32	2.1	31	83	8	80	49	0	1	49	1.10
18339--18398	16	3.9	16	75	18	65	48	1	0	50	1.11
18316--18410	45	2.2	44	76	19	101	48	1	0	50	1.07
18664--18702	6	6.3	6	88	5	51	41	0	10	48	1.37
18665--18703	19	2.1	19	90	0	60	43	0	10	46	1.37
18929--19079	5	30.6	5	67	18	68	57	0	0	41	1.08
18937--18972	18	2.0	18	88	0	54	69	2	0	27	1.02
18975--19047	19	3.9	18	75	10	67	52	0	1	46	1.09
18937--19089	23	6.5	23	71	12	89	59	0	0	39	1.07
18990--19088	11	7.5	13	72	24	66	57	0	0	42	0.98
21094--21124	14	2.2	14	100	0	62	51	12	0	35	1.40
21852--22034	34	5.4	34	88	0	260	25	7	26	39	1.83
22342--22404	19	3.3	19	90	0	90	28	17	19	34	1.94
26470--26654	34	5.5	34	88	0	264	25	7	26	40	1.82
28839--28949	53	2.1	53	93	1	188	43	19	7	29	1.78
31411--31450	20	2.0	20	95	0	71	57	0	0	42	0.98
31892--31926	2	17.5	2	100	0	70	0	48	0	51	1.00
33279--33315	2	18.5	2	100	0	74	48	0	0	51	1.00
36582--36608	2	13.5	2	100	0	54	51	0	0	48	1.00
38369--38481	59	1.9	59	82	7	140	44	1	0	53	1.10
38426--38483	17	3.3	17	79	13	64	44	3	0	51	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38445--38502	14	4.1	14	77	14	57	44	1	0	53	1.10
42154--42231	32	2.4	34	80	8	99	55	0	1	43	1.08
42172--42224	16	3.2	17	80	17	67	54	0	0	45	0.99
43473--43623	30	5.2	28	70	18	89	39	1	3	55	1.28
43481--43519	19	2.1	18	90	4	60	35	2	0	61	1.10
43873--43922	23	2.4	19	81	18	55	28	6	10	56	1.56
44472--44530	16	3.8	16	68	4	50	52	0	0	47	1.00
44970--45015	2	23.0	2	91	8	76	50	2	0	47	1.13
45216--45250	17	2.2	16	90	10	54	51	0	2	45	1.16
45250--45317	23	3.0	23	73	4	57	42	0	4	52	1.21
45745--45803	18	3.2	17	77	15	55	54	0	0	45	0.99
45744--45808	20	3.3	20	71	22	57	55	0	0	44	0.99
45741--45846	33	2.9	36	76	17	105	51	0	0	48	1.00
46390--46423	17	2.1	17	88	5	52	52	2	2	41	1.31
46646--46693	21	2.3	21	81	0	60	41	10	0	47	1.37
46879--46905	2	13.5	2	100	0	54	51	0	0	48	1.00
47277--47304	11	2.5	11	100	0	56	39	7	14	39	1.73
47360--47391	17	1.9	16	93	6	55	59	3	0	37	1.13
47521--47559	21	2.0	20	85	10	53	51	5	5	38	1.46
48177--48213	18	2.1	18	89	0	56	59	0	0	40	0.97
48539--48699	77	2.1	76	94	5	283	48	0	12	38	1.46
48555--48716	77	2.2	72	89	10	245	51	0	12	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48876--48914	15	2.8	14	88	7	53	61	0	0	38	0.96
49338--49386	22	2.1	25	85	11	68	51	0	0	48	1.00
50100--50173	29	2.4	30	80	17	82	31	4	0	64	1.12
50295--50370	20	4.0	20	80	10	72	59	0	1	39	1.06
50313--50378	31	2.1	33	88	11	102	60	0	0	39	0.97
50434--50522	15	6.1	14	67	22	51	53	3	0	42	1.17
53177--53212	2	18.0	2	94	0	63	0	47	0	52	1.00
53723--53842	58	2.1	58	100	0	240	36	23	10	30	1.87
56417--56451	7	5.0	7	89	0	52	28	20	14	37	1.91
59842--59908	19	3.5	18	68	20	55	25	7	4	62	1.40
59836--59913	39	2.0	39	100	0	156	23	10	5	61	1.48
60754--60816	26	2.4	26	76	7	65	46	0	0	53	1.00
63807--64136	110	3.0	110	98	1	628	31	16	10	41	1.82
65699--65769	27	2.8	26	70	18	60	45	0	0	54	0.99
68541--68608	21	3.3	19	78	17	66	39	1	0	58	1.07
68594--68650	23	2.6	23	75	10	57	47	0	0	52	1.00
69065--69102	12	3.2	12	82	14	51	44	0	0	55	0.99
69279--69334	27	2.0	28	82	3	69	58	0	3	37	1.15
69386--69473	41	2.2	39	74	18	90	54	0	0	45	0.99
69510--69548	20	2.0	20	89	0	60	64	0	0	35	0.94
73031--73083	28	1.9	27	85	11	72	58	1	0	39	1.09
78083--78110	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78376--78473	32	3.1	32	77	11	94	41	5	2	51	1.35
78453--78496	11	3.8	12	79	14	56	34	6	0	59	1.24
79173--79204	15	2.1	15	100	0	64	28	34	6	31	1.82
81541--81591	26	1.9	27	96	4	95	31	19	11	37	1.88
83550--83591	22	1.9	23	85	9	61	21	9	0	69	1.17
83767--83813	23	2.0	23	84	8	60	59	0	2	38	1.09
84169--84216	20	2.3	20	96	3	87	29	12	6	52	1.63
84470--84593	62	2.0	62	96	0	230	36	14	17	31	1.90
84708--85737	523	2.0	521	91	1	1668	29	25	13	31	1.93
86755--86816	28	2.2	29	81	16	78	51	0	0	48	1.00
87255--87330	20	3.6	22	75	18	63	52	1	0	46	1.08
90441--90611	84	2.0	84	100	0	342	25	12	20	41	1.88
94876--94919	14	3.2	13	84	12	61	59	0	2	38	1.10
95179--95221	15	3.0	14	80	13	52	65	0	0	34	0.93
95619--95655	3	12.3	3	100	0	74	67	0	0	32	0.91
95808--95855	18	2.6	18	83	16	62	72	0	0	27	0.84
95878--95941	18	3.7	17	76	14	51	50	1	1	46	1.20
96384--96427	22	2.0	23	86	8	65	61	0	0	38	0.96
97718--97770	27	1.9	28	85	11	74	49	0	1	49	1.12
98318--98366	22	2.3	21	79	10	55	44	0	4	51	1.20
98341--98382	15	2.8	15	79	20	52	47	0	2	50	1.14
98331--98400	35	2.0	35	83	5	88	50	0	1	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103334--103372	20	1.9	21	89	5	62	35	0	2	61	1.10
103330--103375	20	2.4	19	82	13	58	34	0	2	63	1.07
103642--103676	2	17.5	2	93	0	61	2	48	0	48	1.16
104399--104736	171	2.0	172	87	2	491	26	15	18	38	1.91
108382--108409	14	2.0	14	100	0	56	35	7	21	35	1.81
109081--109161	33	2.4	35	87	8	130	20	12	24	41	1.87
111857--111896	21	1.9	21	85	10	55	50	10	0	40	1.36
112163--112211	25	2.0	24	84	8	62	65	0	4	30	1.11
112668--112699	2	16.0	2	93	0	55	53	0	0	46	1.00
113307--113341	18	2.0	18	94	5	63	45	5	20	28	1.73

Tables:   1   2   3   4   5   6   7   8