genome.fa.s507.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold507
Parameters: 2 7 7 80 10 50 1000
Length:  914714

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402290--402369	22	3.6	23	80	14	80	55	0	0	45	0.99
402299--402386	20	4.1	21	73	13	63	57	0	0	42	0.98
404446--404501	18	3.3	18	67	23	57	23	35	14	26	1.93
404445--404553	33	3.4	33	87	10	154	18	37	15	28	1.91
404453--404509	18	3.3	18	68	22	59	21	38	17	22	1.93
405423--405649	33	6.9	33	78	2	177	15	15	38	30	1.89
405423--405606	99	1.9	99	83	4	246	15	14	38	32	1.87
405597--405715	33	3.6	34	76	10	113	20	21	33	25	1.97
406259--406604	172	2.0	171	98	0	665	45	12	16	25	1.82
410091--410143	13	3.9	13	76	9	52	58	7	13	20	1.59
410086--410124	13	2.9	14	80	7	53	58	2	15	23	1.49
412995--413095	46	2.1	48	82	10	120	31	1	0	65	1.10
412996--413089	29	3.2	28	80	17	86	31	2	1	64	1.12
413147--413227	7	10.6	7	71	21	56	62	0	0	37	0.95
413137--413201	10	6.8	10	77	19	50	64	0	1	33	1.03
413134--413224	31	2.9	32	86	3	139	62	0	1	36	1.02
413140--413224	16	5.4	16	81	2	109	63	0	1	35	1.02
414645--414685	14	2.9	15	85	7	50	60	0	0	39	0.96
414655--414704	21	2.3	21	82	3	55	52	2	0	46	1.12
414839--414885	2	23.5	2	100	0	94	51	0	0	48	1.00
415702--415743	21	1.9	22	85	9	59	30	0	4	64	1.14
416192--416246	13	4.2	13	82	15	60	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418070--418119	20	2.3	23	86	10	70	50	4	0	46	1.20
418309--418349	22	1.9	21	85	14	57	58	0	0	41	0.98
418567--418610	22	2.0	21	82	4	52	45	2	2	50	1.27
419729--419919	105	1.8	105	88	4	296	30	12	25	30	1.93
419729--419945	105	2.1	105	85	3	294	31	12	25	30	1.92
419758--419978	105	2.1	105	80	5	241	31	14	25	28	1.94
422945--422985	21	2.1	19	90	9	64	60	0	0	39	0.96
424875--424935	31	2.0	31	87	6	88	49	0	0	50	1.00
426333--426523	105	1.8	105	87	0	283	31	12	24	31	1.92
426333--426549	105	2.1	105	84	0	281	32	11	23	31	1.91
428673--428714	19	2.2	20	82	4	50	47	7	14	30	1.71
432691--432901	105	2.0	105	83	0	269	32	13	23	30	1.93
437309--437359	17	2.9	17	77	13	59	54	1	1	41	1.22
439047--439095	17	2.8	18	75	9	57	34	0	0	65	0.93
439042--439082	20	2.0	20	86	13	57	36	0	0	63	0.95
439047--439117	16	4.2	17	75	21	69	32	0	0	67	0.91
442003--442218	105	2.1	105	79	3	229	31	14	25	29	1.95
445149--445185	19	2.0	19	94	5	67	45	0	0	54	1.00
447181--447233	17	2.8	18	80	11	54	47	0	0	52	1.00
447357--447383	13	2.1	13	100	0	54	74	0	0	25	0.83
448627--448829	105	1.9	105	83	2	264	31	13	27	27	1.94
458548--458664	38	3.0	41	79	14	113	55	1	2	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459230--459275	3	15.3	3	100	0	92	32	0	0	67	0.91
460162--460211	24	2.0	25	88	3	75	42	0	0	58	0.98
460164--460212	13	3.9	13	76	10	57	40	0	0	59	0.98
461544--461577	10	3.2	10	91	8	50	35	0	2	61	1.11
462583--462638	22	2.7	22	83	10	73	39	1	0	58	1.08
462633--462681	10	4.2	12	80	12	50	59	0	0	40	0.98
462865--462897	11	2.8	12	86	9	50	48	0	0	51	1.00
463259--463300	8	5.4	8	85	2	50	66	0	0	33	0.92
463489--463527	19	2.1	19	85	0	51	30	0	10	58	1.31
463961--463986	8	3.2	8	100	0	52	23	0	0	76	0.78
464015--464102	5	18.0	5	69	17	60	40	2	1	55	1.20
464056--464102	18	2.7	18	83	6	62	40	0	0	59	0.97
469650--469684	2	17.5	2	100	0	70	48	0	0	51	1.00
469959--469993	14	2.5	14	90	0	52	42	2	11	42	1.55
470024--470064	11	3.9	11	81	12	50	70	0	0	29	0.87
470319--470351	2	16.5	2	93	0	57	54	0	0	45	0.99
470925--470962	2	19.0	2	84	10	51	47	5	0	47	1.24
473254--473298	20	2.2	21	84	7	58	22	6	2	68	1.24
473285--473341	27	2.1	27	86	3	78	24	1	5	68	1.20
473291--473343	27	2.0	27	96	0	97	22	0	5	71	1.06
474586--474632	14	3.1	15	82	11	51	57	0	0	42	0.98
475578--475961	138	2.9	135	81	7	417	40	24	6	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476085--476134	15	3.2	15	78	10	55	48	0	0	52	1.00
476094--476136	16	2.6	17	85	10	63	55	0	0	44	0.99
476806--476840	17	2.0	18	88	5	54	34	0	0	65	0.93
477048--477093	23	2.0	23	86	4	65	67	6	2	23	1.25
477060--477093	11	2.9	12	82	8	52	73	2	0	23	0.97
477983--478048	33	1.9	34	81	6	80	60	6	0	33	1.21
478044--478092	25	2.0	25	83	0	62	4	14	0	81	0.83
478166--478193	2	14.0	2	100	0	56	50	0	0	50	1.00
478278--478347	18	3.3	22	62	18	58	58	10	8	22	1.57
478263--478383	40	3.0	41	96	2	226	57	13	9	19	1.64
478649--478690	21	2.0	21	90	9	68	47	0	0	52	1.00
478640--478734	29	3.3	29	70	11	72	48	0	0	51	1.00
478725--478772	20	2.6	19	81	12	55	54	0	0	45	0.99
478681--478762	34	2.4	34	82	10	87	52	0	0	47	1.00
481621--481735	60	1.9	60	89	0	176	37	15	16	30	1.90
487676--487708	16	2.0	17	88	5	50	0	0	12	87	0.53
488053--488105	22	2.4	22	78	9	63	43	0	1	54	1.11
488419--488475	29	2.0	28	83	6	71	52	0	0	47	1.00
488450--488493	21	2.2	19	88	8	61	36	0	0	63	0.95
488846--488882	2	18.5	2	100	0	74	51	0	0	48	1.00
489003--489060	29	2.0	29	86	6	82	48	3	5	43	1.42
488994--489060	29	2.5	26	72	23	66	50	2	5	40	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489756--489793	5	7.4	5	91	8	51	76	0	0	23	0.79
489822--489855	12	2.8	12	86	0	50	2	29	5	61	1.34
496129--496154	2	13.0	2	100	0	52	50	0	0	50	1.00
496601--496638	15	2.5	15	84	16	51	39	2	2	55	1.28
498810--498850	14	3.0	13	83	13	55	58	0	2	39	1.11
499696--499720	2	12.5	2	100	0	50	48	0	0	52	1.00
501096--501384	113	2.6	113	92	1	465	31	28	17	23	1.97
501987--502020	10	3.4	10	92	8	52	44	5	0	50	1.26
502093--502192	16	6.2	16	80	10	98	63	4	0	33	1.13
502093--502211	48	2.5	48	82	5	125	61	4	0	34	1.15
502116--502187	15	4.3	17	82	12	78	65	2	0	31	1.07
502095--502215	15	8.1	15	75	11	70	60	4	0	35	1.16
502524--502566	22	2.0	22	86	4	61	65	0	0	34	0.93
505825--505891	26	2.6	26	95	0	116	53	19	8	17	1.70
506406--506444	16	2.4	16	82	0	51	28	0	2	69	1.02
506425--506506	32	2.7	29	79	9	83	36	0	3	59	1.15
506388--506511	17	7.8	16	65	20	55	36	0	4	59	1.16
507567--507622	13	4.2	13	74	19	53	46	0	0	53	1.00
511074--511141	35	1.9	35	96	0	127	14	10	22	52	1.71
514835--514905	19	3.8	18	81	9	72	63	1	2	32	1.18
515481--515520	19	2.1	19	90	9	64	45	0	0	55	0.99
515472--515591	48	2.4	48	78	14	118	52	0	0	46	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515552--515610	5	12.0	5	75	13	52	57	1	0	40	1.09
515512--515612	17	5.8	18	72	21	83	57	0	0	40	1.12
515551--515617	34	2.0	32	88	5	98	58	1	0	40	1.07
515909--515998	28	3.4	27	75	20	82	30	0	1	68	0.96
515934--515964	10	3.0	10	95	4	53	22	0	0	77	0.77
515914--515998	15	6.4	13	73	21	61	30	0	1	68	0.97
516128--516182	18	2.9	18	81	13	58	30	0	0	69	0.89
516130--516187	20	3.0	19	77	22	59	32	0	0	67	0.91
516683--516732	19	2.7	18	84	6	73	26	2	0	72	0.96
516877--516937	22	3.0	20	67	9	50	36	13	8	42	1.74

Tables:   1   2   3   4   5   6   7   8