genome.fa.s507.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold507
Parameters: 2 7 7 80 10 50 1000
Length:  914714

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602146--602176	2	15.5	2	100	0	62	48	0	0	51	1.00
602239--602277	2	19.5	2	100	0	78	51	0	0	48	1.00
603989--604023	6	5.8	6	89	0	52	28	48	20	2	1.63
609539--609596	28	2.1	28	84	12	75	48	6	0	44	1.29
609838--609876	13	3.0	13	84	0	51	48	0	0	51	1.00
612456--613134	226	3.0	226	98	0	1295	29	18	18	33	1.95
622335--622378	13	3.4	13	78	12	54	63	6	2	27	1.31
623149--623182	13	2.5	14	90	4	52	35	0	0	64	0.94
624412--624446	16	2.2	16	89	0	52	34	0	0	65	0.93
624461--624513	6	8.5	6	81	8	61	56	0	0	43	0.99
624448--624520	26	2.8	25	81	6	83	57	0	0	42	0.98
624459--624520	13	4.8	13	76	13	65	59	0	0	40	0.97
627265--627301	16	2.2	17	90	4	58	56	0	0	43	0.99
627251--627316	23	2.8	24	80	11	68	62	0	0	37	0.96
627383--627435	18	2.6	21	77	20	67	32	0	1	66	1.03
627409--627467	25	2.3	27	85	5	77	35	6	0	57	1.25
628341--628374	13	2.7	13	90	4	52	38	0	0	61	0.96
628345--628400	23	2.3	25	82	11	73	42	0	0	57	0.99
628345--628411	24	2.8	24	80	11	75	37	1	0	61	1.05
628517--628575	15	3.9	15	74	12	50	40	3	3	52	1.35
628843--628881	20	1.9	21	85	15	55	74	2	0	23	0.94
628841--628881	13	3.1	13	89	10	57	73	2	0	24	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628994--629053	20	2.9	20	73	14	59	45	0	0	55	0.99
629008--629054	20	2.3	21	82	7	62	44	0	0	55	0.99
629725--629760	18	1.9	19	88	5	56	50	0	5	44	1.25
629771--629805	2	18.0	2	88	5	54	48	2	0	48	1.16
630164--630230	6	11.2	6	74	15	50	35	1	2	59	1.22
630341--630380	20	2.0	20	100	0	80	40	0	5	55	1.22
632789--632852	2	32.0	2	100	0	128	0	50	0	50	1.00
632852--632878	2	13.5	2	100	0	54	48	51	0	0	1.00
633016--633040	2	12.5	2	100	0	50	0	48	0	52	1.00
633042--633076	2	17.5	2	100	0	70	0	0	48	51	1.00
634336--634363	2	14.0	2	100	0	56	50	0	0	50	1.00
636247--636317	20	3.2	25	67	28	63	40	0	0	59	0.98
637057--637089	14	2.4	14	90	5	50	48	0	0	51	1.00
637053--637087	15	2.3	15	90	5	52	45	0	0	54	0.99
637263--637292	3	10.0	3	92	0	51	30	0	3	66	1.07
637466--637507	18	2.4	19	88	11	63	52	0	0	47	1.00
637870--637918	20	2.5	19	78	12	55	44	2	0	53	1.12
637953--638013	11	6.2	10	75	24	51	31	0	1	67	1.01
637964--637998	18	2.1	16	89	10	52	31	0	0	68	0.90
637954--638019	27	2.5	28	81	13	70	30	0	1	68	0.99
639738--639891	77	2.0	77	89	2	238	40	13	13	31	1.84
640236--640300	21	3.2	21	76	8	55	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647247--647278	1	32.0	1	100	0	64	0	0	100	0	0.00
648477--648527	21	2.3	23	80	6	61	45	0	1	52	1.12
648553--648616	15	4.1	15	70	7	56	46	9	6	37	1.61
649530--649584	23	2.4	23	78	0	65	14	12	50	21	1.76
652191--652222	2	16.0	2	100	0	64	50	0	0	50	1.00
656410--656524	32	3.6	31	79	10	133	38	4	0	56	1.25
657151--657194	21	2.2	21	84	8	65	72	2	0	25	0.96
657155--657193	19	2.0	20	90	10	62	71	2	0	25	0.98
657157--657210	21	2.7	19	77	8	54	68	3	0	27	1.06
657197--657255	23	2.6	22	75	17	57	52	0	1	45	1.10
658949--658992	2	22.5	2	81	4	54	56	0	0	43	0.99
659569--659595	1	27.0	1	100	0	54	0	100	0	0	0.00
672143--672177	18	1.9	18	88	0	52	25	14	14	45	1.82
673382--673406	13	1.9	13	100	0	50	84	0	0	16	0.63
678380--678417	2	19.0	2	100	0	76	50	0	0	50	1.00
678564--678593	3	10.0	3	100	0	60	66	0	0	33	0.92
678778--678822	20	2.2	21	84	4	56	42	0	0	57	0.98
679112--679180	27	2.6	28	79	9	81	52	0	0	47	1.00
679784--679830	25	1.9	24	86	4	67	51	0	0	48	1.00
680168--680221	19	2.6	22	75	22	62	55	0	0	44	0.99
684975--685010	3	12.0	3	93	0	63	30	2	0	66	1.06
685065--685114	26	2.0	25	84	4	64	28	0	4	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685091--685156	21	3.5	19	76	11	64	31	0	1	66	1.01
685106--685186	21	3.8	21	75	16	85	33	0	1	65	1.01
686350--686400	27	1.9	27	84	4	68	37	9	0	52	1.34
686391--686420	13	2.3	13	100	0	60	53	0	0	46	1.00
686586--686630	3	15.0	3	95	0	81	64	2	0	33	1.06
686728--686789	30	2.1	30	81	0	70	41	1	3	53	1.27
686970--687011	11	4.1	11	79	17	54	76	0	0	23	0.79
686965--687009	19	2.4	18	86	13	65	75	0	0	24	0.80
686978--687006	13	2.1	14	93	6	51	75	0	0	24	0.80
688030--688071	21	2.0	21	86	9	59	52	0	0	47	1.00
688033--688108	16	4.3	17	71	19	50	53	0	2	43	1.14
688040--688113	33	2.3	33	83	6	89	55	0	2	41	1.14
688255--688310	21	2.6	22	77	8	71	39	8	1	50	1.44
689977--690003	2	13.5	2	100	0	54	48	0	0	51	1.00
691626--691650	13	1.9	13	100	0	50	64	4	0	32	1.12
692694--692752	26	2.1	28	81	9	68	38	10	1	49	1.47
697129--697160	2	16.0	2	100	0	64	50	0	0	50	1.00
699989--700034	20	2.3	20	88	0	65	34	4	50	10	1.57
700112--700182	27	2.6	27	88	6	99	46	23	7	22	1.76
702066--702111	21	2.1	22	84	4	58	19	30	19	30	1.97
704564--704609	20	2.3	20	88	0	65	34	4	50	10	1.57
704687--704757	27	2.6	27	86	6	90	46	22	7	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706372--706437	28	2.3	30	81	5	73	37	6	0	56	1.24
707737--707782	20	2.3	20	84	0	56	32	4	52	10	1.56
707859--707929	27	2.6	27	88	6	99	46	23	7	22	1.76
711492--711524	16	2.1	16	100	0	66	33	6	30	30	1.82
712449--712519	27	2.6	28	90	2	108	47	23	5	22	1.72
713174--713216	3	14.3	3	100	0	86	67	0	0	32	0.91
719411--719456	22	2.2	20	84	7	56	50	0	0	50	1.00
719835--719934	52	1.9	51	80	11	114	35	3	1	61	1.18
719891--719931	16	2.4	18	84	12	59	29	0	0	70	0.87
719906--719951	12	3.8	12	85	8	67	28	2	0	69	1.00
719895--719957	23	2.7	24	85	9	85	26	1	1	69	1.06
719891--719931	11	3.6	11	83	6	55	29	0	0	70	0.87
720371--720416	21	2.2	21	100	0	92	30	8	23	36	1.85
720997--721027	2	16.0	2	93	6	55	51	0	0	48	1.00
729491--729529	20	2.0	20	95	5	71	43	10	0	46	1.37
732199--732229	16	1.9	16	93	0	53	48	0	3	48	1.17
734836--734879	18	2.5	19	85	10	58	47	18	15	18	1.83
735730--735772	2	21.5	2	100	0	86	48	0	0	51	1.00
735967--736025	26	2.3	24	83	13	73	20	0	6	72	1.06
736812--736845	17	1.9	18	94	5	61	70	0	29	0	0.87
736813--736855	22	2.0	21	86	4	59	74	0	25	0	0.82
736936--737027	11	8.6	11	65	27	56	28	1	1	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736940--737001	24	2.7	23	85	7	90	27	0	0	72	0.85
736936--737037	52	1.9	53	80	9	120	28	0	0	69	1.01
736953--737039	22	4.0	22	74	16	67	28	1	1	68	1.03
736942--737051	29	3.5	33	74	17	90	30	1	0	66	1.08
736950--737045	31	3.1	31	74	16	90	30	2	1	66	1.10
739086--739124	17	2.3	17	86	0	51	61	5	5	28	1.39
741721--741813	33	2.8	33	81	1	116	50	0	2	47	1.13
744138--744185	19	2.6	18	80	6	60	29	2	0	68	1.01
744898--744964	24	2.8	24	80	11	73	65	0	2	31	1.07
746350--746567	34	6.5	34	85	5	282	40	27	7	24	1.82

Tables:   1   2   3   4   5   6   7   8