genome.fa.s507.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold507
Parameters: 2 7 7 80 10 50 1000
Length:  914714

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517206--517250	23	1.9	24	86	4	65	31	0	4	64	1.13
517440--517480	20	2.1	20	86	4	57	68	0	0	31	0.90
517446--517538	20	4.5	21	68	10	59	53	1	1	44	1.14
519775--519815	2	20.5	2	100	0	82	51	0	0	48	1.00
523004--523057	16	3.4	15	77	10	54	38	0	0	61	0.96
523064--523088	8	3.1	8	100	0	50	36	0	0	64	0.94
524101--524169	9	7.2	10	73	18	58	36	1	0	62	1.04
524101--524198	19	5.1	18	68	19	56	38	1	0	60	1.04
524358--524436	33	2.4	33	75	8	79	51	1	0	46	1.08
524371--524419	24	2.0	24	84	0	62	57	2	0	40	1.10
524453--524486	11	3.2	11	91	4	52	44	0	0	55	0.99
524441--524513	38	1.9	38	83	5	94	46	0	0	53	1.00
524452--524484	16	2.0	17	88	5	50	45	0	0	54	0.99
524495--524533	20	2.0	20	100	0	78	35	0	0	64	0.94
524744--524785	2	21.0	2	95	0	75	52	0	0	47	1.00
525593--525630	20	1.9	20	88	0	58	63	0	0	36	0.95
526059--526097	20	2.0	20	85	5	53	48	0	0	51	1.00
526323--526358	13	2.8	12	88	12	54	30	0	0	69	0.89
526599--526753	15	10.1	16	66	22	50	43	0	0	56	0.99
526599--526653	27	2.0	26	86	10	74	43	0	0	56	0.99
526593--526680	45	1.9	46	82	13	110	43	0	0	56	0.99
526599--526764	41	4.0	40	69	21	101	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526903--526944	21	2.0	21	90	9	68	42	0	0	57	0.99
526889--526992	51	2.0	51	82	14	126	48	0	0	50	1.07
526985--527022	14	2.6	15	87	4	51	55	0	0	44	0.99
528407--528460	26	2.2	24	86	6	72	40	0	0	59	0.98
528425--528473	17	3.0	17	75	19	50	34	0	0	65	0.93
529913--529954	6	7.3	6	87	12	54	33	0	0	66	0.92
529913--529954	11	3.7	11	87	12	59	33	0	0	66	0.92
529977--530019	17	2.5	17	80	0	59	46	0	0	53	1.00
531943--531976	16	2.1	16	100	0	68	20	26	11	41	1.87
535885--535925	19	2.2	19	100	0	82	39	4	21	34	1.75
539141--539225	37	2.3	37	83	0	98	61	3	3	31	1.30
539636--539678	22	2.0	22	85	0	59	60	0	0	39	0.97
539678--539712	17	2.0	18	88	5	54	48	2	0	48	1.16
543771--543827	20	2.9	20	82	10	73	38	0	0	61	0.96
543771--543868	42	2.4	40	80	14	96	38	0	1	60	1.04
543972--544029	25	2.3	25	81	0	71	36	5	17	41	1.72
544253--544295	19	2.3	18	84	4	50	44	2	0	53	1.13
544280--544356	11	7.3	11	73	14	63	33	1	0	64	1.01
544268--544346	25	3.3	24	69	13	58	35	2	0	62	1.09
544280--544351	26	2.8	26	85	6	101	33	1	0	65	1.02
544705--544749	7	6.9	7	80	10	51	53	0	2	44	1.13
544707--544757	25	2.0	25	88	7	77	49	0	1	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544867--544909	23	1.9	22	85	4	59	34	0	16	48	1.46
545284--545345	30	2.1	30	81	3	72	56	0	1	41	1.09
545992--546060	24	2.9	23	79	10	68	44	1	0	53	1.09
546003--546112	41	2.6	41	70	11	98	42	0	0	55	1.12
546432--546499	17	3.9	17	75	9	66	51	0	1	47	1.09
546475--546538	18	3.7	17	79	8	58	57	6	1	34	1.33
547780--547824	20	2.2	20	88	7	65	37	0	0	62	0.96
548267--548308	10	4.3	10	79	14	52	26	2	2	69	1.13
554351--554381	10	3.0	10	90	9	53	29	0	3	67	1.06
558092--558158	33	2.0	33	94	0	116	23	22	10	43	1.84
564254--564280	3	9.0	3	100	0	54	33	0	33	33	1.58
564490--564536	24	2.0	24	91	0	76	53	0	2	44	1.12
564704--564907	102	2.0	99	87	6	295	41	12	9	36	1.76
564970--565016	24	2.0	24	83	8	60	53	0	0	46	1.00
564988--565041	26	2.0	27	85	3	74	53	1	0	44	1.11
565302--565326	6	4.2	6	100	0	50	84	0	0	16	0.63
565613--565651	7	5.7	7	93	6	71	61	0	0	38	0.96
566259--566302	2	22.0	2	100	0	88	50	0	0	50	1.00
569066--569101	12	2.9	12	88	8	54	47	0	2	50	1.15
569066--569099	13	2.7	13	90	4	52	50	0	2	47	1.16
569075--569114	20	2.0	20	85	0	53	42	0	5	52	1.23
569792--569841	23	2.1	25	85	7	68	54	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570699--570745	24	1.9	25	82	4	60	57	0	0	42	0.98
571429--571457	2	14.5	2	100	0	58	48	0	0	51	1.00
571512--571561	15	3.5	15	75	8	50	16	4	10	70	1.30
571986--572025	21	1.9	21	85	10	55	40	2	2	55	1.27
572460--572535	20	3.8	20	82	0	89	27	18	7	46	1.77
572408--572585	92	1.9	92	82	4	225	28	16	10	44	1.81
572548--572585	20	1.9	20	88	0	58	36	18	10	34	1.85
575251--575317	21	3.0	22	80	6	73	77	1	17	2	0.97
575251--575308	11	5.4	11	76	13	50	79	0	18	1	0.82
575250--575307	10	5.8	10	75	22	59	77	0	20	1	0.86
579584--579618	13	2.8	12	91	8	61	42	0	0	57	0.99
579933--579980	23	2.2	23	85	7	64	54	0	0	45	0.99
579939--579979	11	3.6	12	77	9	50	60	0	0	39	0.96
579896--579991	49	2.0	45	80	11	104	51	0	0	48	1.00
582039--582102	31	2.0	33	82	14	82	42	0	0	57	0.98
583027--583051	12	2.1	12	100	0	50	36	0	0	64	0.94
583261--583311	19	2.7	18	85	14	59	56	0	0	43	0.99
583752--583806	18	3.2	17	78	12	58	56	0	0	43	0.99
585204--585253	17	3.0	16	73	26	50	52	2	0	46	1.12
585204--585266	33	1.9	33	83	6	83	49	4	0	46	1.23
585256--585304	19	2.6	17	79	17	53	32	8	0	59	1.27
588304--588354	20	2.6	21	78	12	63	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589799--589830	2	16.0	2	100	0	64	50	0	0	50	1.00
590006--590053	20	2.4	19	82	10	51	41	2	2	54	1.24
590110--590163	23	2.3	24	76	17	60	57	1	3	37	1.27
593514--593557	18	2.4	18	85	7	54	54	0	0	45	0.99
593899--593932	10	3.3	10	84	8	50	44	0	0	55	0.99
594439--594494	25	2.2	24	81	15	60	48	1	0	50	1.11
594659--594708	20	2.5	20	73	0	55	44	0	0	56	0.99
595575--595638	30	2.2	29	78	15	69	42	0	0	57	0.98
595647--595680	13	2.5	13	90	4	50	47	0	0	52	1.00
595659--595693	15	2.3	15	90	0	52	48	0	0	51	1.00
595691--595786	28	3.6	27	73	19	85	65	1	0	33	1.00
595747--595801	18	3.2	18	80	10	62	67	1	0	30	1.01
595741--595805	8	7.9	8	76	17	53	64	1	0	33	1.03
595783--595838	28	2.2	26	80	20	73	58	1	0	39	1.08
596241--596276	18	2.0	18	94	0	63	30	0	0	69	0.89
596508--596538	15	2.0	16	93	6	55	48	0	0	51	1.00
596897--596967	22	3.0	24	85	6	92	54	0	0	45	0.99
596925--596974	17	3.1	17	81	16	61	50	0	0	50	1.00
597326--597418	20	4.6	20	73	16	66	47	1	0	51	1.07
597382--597425	21	2.2	20	91	4	70	61	0	0	38	0.96
597744--597883	5	28.6	5	67	20	64	36	2	1	60	1.18
597764--597859	20	4.7	21	76	11	74	33	1	1	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597745--597844	18	5.7	17	76	19	64	35	0	1	64	1.01
597762--597844	18	4.4	18	72	23	73	31	0	1	67	0.98
597719--597831	11	10.5	11	71	20	69	38	0	1	59	1.14
597978--598020	16	2.7	16	85	7	52	48	4	2	44	1.36
598316--598354	21	1.9	20	89	5	60	38	0	0	61	0.96
598349--598408	16	3.8	15	76	10	57	58	0	0	41	0.98
598329--598390	26	2.3	27	75	8	65	51	0	0	48	1.00
598349--598411	32	2.0	32	84	6	83	58	0	0	41	0.98
600795--601250	225	2.0	225	99	0	894	28	26	20	23	1.99
601808--601871	30	2.2	29	80	8	76	53	1	0	45	1.10

Tables:   1   2   3   4   5   6   7   8