genome.fa.s507.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold507
Parameters: 2 7 7 80 10 50 1000
Length:  914714

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309477--309516	21	1.9	21	85	10	55	50	0	0	50	1.00
309574--309614	12	3.4	12	82	0	55	70	2	0	26	0.99
313831--314023	95	2.0	98	83	5	250	33	25	11	29	1.92
314571--314642	35	2.1	35	100	0	144	34	0	22	43	1.54
315597--315634	18	2.0	20	90	10	62	57	0	0	42	0.98
315999--316044	23	2.0	24	86	4	67	32	0	0	67	0.91
317999--318058	3	18.7	3	85	10	75	35	0	1	63	1.05
317999--318055	24	2.5	22	91	5	87	35	0	1	63	1.05
318660--318712	19	2.7	20	79	5	63	39	0	0	60	0.97
318613--318712	19	5.2	19	72	10	60	41	0	0	59	0.98
318622--318735	20	5.8	19	71	13	70	37	0	0	61	1.02
320248--320300	18	2.8	20	75	24	60	45	0	0	54	0.99
320293--320322	14	2.1	15	93	6	53	30	0	0	70	0.88
321142--321180	12	3.2	12	88	3	51	41	0	5	53	1.23
322348--322435	34	2.6	34	82	7	92	55	0	0	44	0.99
326560--326593	3	11.3	3	100	0	68	67	0	0	32	0.91
329697--329734	11	3.1	12	88	11	51	50	0	0	50	1.00
329698--329735	14	3.0	13	88	11	53	52	0	0	47	1.00
329988--330030	2	21.5	2	95	0	68	51	4	0	44	1.22
331017--331047	3	10.3	3	100	0	62	67	0	0	32	0.91
332241--332269	3	9.7	3	100	0	58	34	0	0	65	0.93
333160--333195	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333506--333570	22	3.0	22	82	8	78	36	1	0	61	1.05
333527--333570	24	1.9	22	86	9	61	38	0	0	61	0.96
333818--333868	18	2.9	17	77	13	50	31	1	0	66	1.03
334016--334041	10	2.6	10	100	0	52	65	0	0	34	0.93
334027--334110	17	4.9	17	70	25	54	58	2	0	39	1.11
334570--334625	22	2.5	23	85	2	69	58	0	0	41	0.98
335026--335068	16	2.6	17	85	7	54	62	0	0	37	0.95
335875--335922	25	1.9	25	91	0	78	31	6	0	62	1.20
335875--335916	13	3.3	13	78	15	52	30	4	0	64	1.14
337985--338037	22	2.4	22	87	9	81	64	0	0	35	0.94
338607--338783	89	2.0	89	90	0	282	32	16	16	35	1.91
338766--338793	2	14.0	2	100	0	56	50	0	0	50	1.00
338974--339024	26	1.9	27	84	11	70	56	0	0	43	0.99
338981--339074	22	4.4	22	73	20	76	47	1	0	51	1.07
338987--339078	20	4.5	21	72	20	70	46	1	0	52	1.07
342869--342901	14	2.3	15	84	5	50	33	0	0	66	0.92
343167--343232	34	1.9	34	82	11	82	34	4	3	57	1.34
343938--343985	2	24.5	2	95	4	89	47	0	0	52	1.00
349502--349557	20	2.7	20	83	10	60	66	1	3	28	1.19
349928--349973	19	2.4	18	82	10	56	41	4	0	54	1.20
350259--350331	18	3.8	18	71	21	51	57	4	0	38	1.18
350314--350365	14	3.5	14	73	14	50	46	3	0	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350704--350732	14	2.0	15	93	6	51	68	0	0	31	0.89
350889--350929	18	2.2	19	86	4	57	65	2	4	26	1.25
350918--350952	17	1.9	19	88	11	56	62	0	0	37	0.95
352208--352262	28	2.0	28	96	0	101	49	20	10	20	1.78
354167--354208	21	2.0	21	85	0	57	19	28	21	30	1.97
356734--356779	24	1.9	24	86	0	65	41	28	6	23	1.79
356774--356837	28	2.3	28	86	5	85	53	17	7	21	1.69
356784--356838	28	2.0	28	92	0	92	49	18	10	21	1.78
357560--357604	11	4.2	11	82	5	56	62	0	2	35	1.08
358317--358382	6	10.8	6	76	14	64	62	0	0	37	0.96
358318--358392	24	3.4	24	71	21	81	61	0	0	38	0.96
358389--358457	5	15.0	5	69	22	53	42	1	0	56	1.08
358389--358456	13	4.6	14	74	25	61	42	1	0	55	1.08
358376--358448	31	2.4	30	88	6	110	46	1	0	52	1.09
358973--359037	27	2.5	26	75	18	71	63	3	0	33	1.10
359454--359503	3	16.7	3	100	0	100	34	0	0	66	0.92
360224--360302	39	2.0	39	100	0	158	44	25	10	20	1.82
366646--366675	2	15.0	2	100	0	60	50	0	50	0	1.00
371509--371594	17	5.0	17	77	17	97	32	1	5	60	1.28
371489--371617	51	2.4	55	81	13	169	37	1	3	56	1.27
371497--371607	51	2.2	51	95	1	195	36	0	4	58	1.25
372816--372857	9	4.7	9	80	11	50	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374045--374099	17	3.4	17	70	25	55	54	1	3	40	1.28
374109--374156	23	2.0	25	84	8	64	66	4	0	29	1.10
378053--378116	34	1.9	33	90	0	92	37	6	3	53	1.42
378383--378407	9	2.8	9	100	0	50	40	0	0	60	0.97
378832--378883	20	2.6	21	76	8	56	59	11	1	26	1.42
378979--379026	18	2.7	18	96	0	87	54	14	10	20	1.70
379526--379580	23	2.4	22	80	20	60	45	1	3	49	1.30
379870--379935	29	2.2	30	83	5	80	51	0	0	48	1.00
381651--381693	18	2.3	18	88	4	68	46	0	0	53	1.00
381702--381760	27	2.2	27	82	11	68	62	0	0	37	0.95
383079--383215	48	2.9	48	77	2	141	23	45	7	24	1.78
383237--383601	48	7.5	48	77	3	309	25	46	3	24	1.68
383237--383598	96	3.7	96	78	2	382	25	46	3	24	1.68
383192--383649	195	2.4	191	84	4	619	28	44	4	22	1.73
383471--383558	27	3.5	27	70	17	89	23	48	3	23	1.66
383576--383697	48	2.5	48	95	0	217	39	40	8	11	1.71
383192--383649	96	4.7	95	74	7	373	28	44	4	22	1.73
383567--383814	126	2.0	126	84	3	329	33	43	6	15	1.74
383672--383730	30	2.0	30	100	0	118	27	50	3	18	1.62
383691--384114	48	8.8	48	75	3	296	25	49	4	21	1.67
383691--384114	96	4.4	96	76	4	334	25	49	4	21	1.67
384026--384162	27	5.5	27	65	23	86	26	48	2	22	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383691--384162	144	3.3	144	79	3	398	26	48	3	21	1.67
383849--384162	48	6.5	48	78	5	233	26	48	2	21	1.64
383846--384162	96	3.3	93	77	9	280	26	48	2	21	1.64
385368--385477	31	3.5	30	72	15	89	46	0	1	51	1.11
386182--386258	30	2.6	30	83	8	86	32	49	3	14	1.61
386176--386321	66	2.2	66	86	2	195	29	49	4	16	1.66
386394--386897	48	10.5	48	71	9	171	26	48	2	21	1.64
386391--386897	96	5.3	96	74	8	399	26	48	2	21	1.64
386391--386890	144	3.5	142	73	9	438	26	48	3	22	1.65
386862--386920	30	2.0	30	89	0	91	32	47	1	18	1.59
386953--387319	48	7.7	48	79	7	284	24	52	2	20	1.60
387036--387301	96	2.8	96	86	2	338	26	51	3	19	1.61
386635--387212	315	1.8	317	85	4	826	26	49	3	20	1.65
387153--387232	21	3.5	21	72	18	70	28	55	2	13	1.52
387174--387259	27	3.4	26	70	23	76	29	53	2	15	1.54
386953--387331	144	2.6	142	76	5	388	24	52	2	20	1.59
389051--389090	18	2.1	19	86	9	55	47	0	0	52	1.00
389375--389449	38	2.0	38	86	5	107	44	0	1	54	1.08
389456--389484	3	9.7	3	100	0	58	34	0	0	65	0.93
390151--390223	33	2.2	33	85	2	92	50	5	4	39	1.44
390868--390935	17	3.9	19	71	26	62	45	0	0	54	0.99
390870--390947	32	2.4	33	91	4	122	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391731--391801	26	2.6	29	76	19	80	52	0	0	47	1.00
391981--392040	30	2.0	29	87	9	86	45	0	0	55	0.99
392057--392108	28	1.9	27	88	7	79	48	0	3	48	1.20
392164--392204	3	13.7	3	100	0	82	31	0	0	68	0.90
392463--392493	2	16.0	2	93	6	55	48	0	0	51	1.00
392811--392852	22	1.9	22	85	9	59	66	0	2	30	1.04
400853--401071	105	2.1	105	89	0	330	30	25	14	30	1.94
402268--402325	27	2.1	27	81	6	64	53	1	0	44	1.10
402290--402350	22	2.8	22	85	11	81	52	0	0	47	1.00
402306--402369	21	2.9	22	83	9	76	57	0	0	42	0.98

Tables:   1   2   3   4   5   6   7   8