genome.fa.s91.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold91
Parameters: 2 7 7 80 10 50 1000
Length:  1327174

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275104--275429	127	2.5	127	82	9	376	19	34	14	31	1.92
275397--275450	27	2.0	27	88	0	81	24	40	12	22	1.89
275425--275563	73	1.9	71	88	5	208	19	30	10	39	1.86
275430--275581	73	2.1	71	84	6	191	21	32	10	35	1.87
275566--275635	33	2.1	35	91	5	117	25	35	17	21	1.95
275635--276385	49	15.7	49	84	7	951	25	26	18	30	1.98
275684--276341	92	7.0	92	85	8	800	24	26	18	29	1.98
275635--276385	141	5.3	141	89	4	1003	25	26	18	30	1.98
277295--277319	13	1.9	13	100	0	50	36	16	16	32	1.90
277275--277345	34	2.1	34	86	2	99	33	11	14	40	1.81
277385--277409	13	1.9	13	100	0	50	32	16	16	36	1.90
277418--277538	52	2.3	52	97	0	224	34	18	18	28	1.94
284062--284095	13	2.6	13	90	0	50	55	0	2	41	1.15
284639--284765	56	2.3	56	93	1	211	46	14	25	13	1.81
284982--285025	17	2.4	19	88	7	65	75	0	20	4	0.98
285215--285253	21	1.9	21	94	5	71	56	25	12	5	1.57
285299--285341	23	1.9	22	85	4	59	53	20	23	2	1.57
288718--288909	96	2.0	96	93	0	330	43	19	11	25	1.85
291516--291558	14	3.0	14	80	6	50	39	0	0	60	0.97
291509--291554	15	3.0	16	81	9	51	41	0	0	58	0.98
293162--293414	127	2.0	128	92	0	418	41	12	16	29	1.84
297824--297865	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298588--298621	2	16.5	2	93	6	59	50	2	0	47	1.16
301771--301931	75	2.1	75	97	0	304	22	27	7	41	1.81
304893--305066	86	2.0	86	98	0	339	33	13	14	37	1.86
305843--306448	257	2.4	256	87	4	828	28	26	11	33	1.91
306421--306475	27	2.0	27	100	0	110	10	18	3	67	1.35
313918--313945	1	28.0	1	100	0	56	100	0	0	0	0.00
315601--315825	109	2.1	109	96	0	414	42	19	19	19	1.90
315826--315861	12	3.0	12	84	15	56	41	0	44	13	1.44
315823--315931	42	2.6	42	78	5	121	45	1	41	11	1.50
326277--326377	41	2.5	40	72	4	94	34	11	9	43	1.75
327835--327920	41	2.1	41	84	4	111	37	9	8	45	1.66
329656--329704	18	2.7	19	78	9	57	36	0	0	63	0.95
329679--329721	19	2.2	20	80	19	56	37	2	0	60	1.10
329660--329721	18	3.4	18	76	24	51	38	1	0	59	1.07
329720--329755	3	12.0	3	100	0	72	66	0	0	33	0.92
334799--334848	19	2.6	19	100	0	100	36	20	12	32	1.89
337505--337538	13	2.6	13	95	0	59	32	17	17	32	1.94
338643--338670	14	2.0	14	100	0	56	21	7	14	57	1.61
344083--344157	20	3.7	19	75	10	60	42	10	12	34	1.77
350522--350550	12	2.3	13	94	5	51	79	0	0	20	0.74
350520--350563	15	3.0	14	83	9	52	77	0	2	20	0.88
350529--350572	20	2.1	21	84	12	56	75	0	2	22	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350642--350762	62	2.0	62	93	0	206	19	17	19	42	1.89
350765--350799	12	2.9	12	95	0	61	17	25	17	40	1.90
350939--350977	12	3.3	12	82	7	53	15	25	15	43	1.86
369062--369117	20	2.8	20	88	0	85	39	14	12	33	1.83
372964--373132	79	2.1	79	84	0	212	32	14	24	28	1.94
373091--373162	28	2.6	28	95	0	126	26	22	30	20	1.98
373197--373269	27	2.7	27	82	2	83	20	19	35	24	1.95
373009--373319	107	2.9	108	80	4	337	29	15	27	27	1.96
373254--373538	153	1.9	154	87	2	421	32	11	24	30	1.91
373250--373537	51	5.6	51	84	4	348	32	12	25	29	1.92
375764--375814	20	2.5	20	96	0	93	41	11	11	35	1.78
375852--375877	13	2.0	13	100	0	52	38	15	15	30	1.88
375909--375960	21	2.6	21	90	6	81	32	15	13	38	1.86
383976--384019	19	2.3	19	100	0	88	13	25	9	52	1.70
387783--387942	4	40.2	4	82	3	126	64	1	31	3	1.17
388624--388673	3	16.7	3	76	15	50	66	0	2	32	1.03
388687--388731	13	3.2	13	85	14	63	64	4	0	31	1.13
389780--389820	17	2.3	18	83	8	57	48	0	4	46	1.23
390289--390327	19	2.1	18	90	4	60	33	0	2	64	1.08
390426--390467	23	1.9	21	90	9	66	64	0	0	35	0.94
390434--390467	11	3.0	11	86	4	50	67	0	0	32	0.91
390669--390738	19	3.7	18	76	12	61	52	0	1	45	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391188--391237	22	2.3	21	89	3	73	46	0	8	46	1.32
391299--391332	16	2.2	15	89	5	50	58	2	0	38	1.13
391805--391840	18	2.0	18	88	0	54	47	2	2	47	1.31
394132--394187	28	2.0	28	100	0	112	25	7	21	46	1.76
395075--395105	16	1.9	16	100	0	62	61	0	12	25	1.32
402963--403087	52	2.4	52	94	0	223	27	16	17	38	1.91
403093--403118	13	2.0	13	100	0	52	38	15	15	30	1.88
403185--403209	13	1.9	13	100	0	50	32	16	16	36	1.90
405361--405430	34	2.1	34	86	5	97	11	34	14	40	1.82
405653--405708	22	2.8	20	69	12	51	14	17	32	35	1.90
405789--405858	22	3.2	22	85	0	86	8	14	42	34	1.76
406451--406577	58	2.2	58	85	7	168	8	24	17	49	1.74
406725--406781	9	6.2	9	72	11	53	17	0	8	73	1.07
406709--406774	28	2.4	27	80	7	78	18	0	10	71	1.14
406724--406786	16	3.6	18	79	12	60	20	0	7	71	1.11
406724--406798	37	2.0	37	82	12	91	20	1	8	70	1.19
407783--407885	32	3.2	32	79	10	111	25	15	33	26	1.95
408004--408111	32	3.4	32	89	3	164	19	17	33	29	1.95
418002--418037	17	2.1	17	94	0	63	27	36	8	27	1.86
427299--427418	51	2.3	52	85	1	170	27	16	12	43	1.84
427612--427641	14	2.1	14	100	0	60	30	30	0	40	1.57
430971--431014	20	2.2	20	87	0	61	45	2	4	47	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431415--431454	21	2.0	21	85	5	55	2	22	0	75	0.93
432235--432503	144	1.9	144	85	5	373	51	7	9	31	1.62
432692--432716	2	12.5	2	100	0	50	48	0	0	52	1.00
432897--432987	29	3.1	29	70	17	87	57	7	2	32	1.39
435306--435337	6	5.3	6	100	0	64	15	18	15	50	1.79
435453--435516	17	3.8	17	70	15	53	57	0	0	42	0.98
442860--442890	16	1.9	16	100	0	62	38	3	19	38	1.68
449468--449494	2	13.5	2	100	0	54	48	0	51	0	1.00
450065--450111	23	1.9	23	83	12	58	61	0	2	36	1.08
450174--450250	40	1.9	41	92	7	131	40	1	0	58	1.06
450388--450431	22	2.0	22	100	0	88	31	22	31	13	1.93
451225--451292	25	2.7	25	83	2	82	48	1	2	47	1.26
451225--451292	26	2.6	25	84	9	75	48	1	2	47	1.26
453837--453888	20	2.5	21	87	3	70	36	9	15	38	1.80
454321--454376	21	2.8	21	78	5	71	39	12	14	33	1.83
454364--454389	13	2.0	13	100	0	52	38	15	15	30	1.88
454416--454490	20	3.7	20	79	13	80	34	13	12	40	1.81
458365--458390	13	2.0	13	100	0	52	38	15	15	30	1.88
458347--458410	32	2.0	33	87	3	94	40	17	14	28	1.88
461703--461755	21	2.5	21	100	0	106	39	11	18	30	1.86
461808--461832	13	1.9	13	100	0	50	32	16	16	36	1.90
471741--471830	8	10.8	8	77	11	83	81	13	3	2	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471739--471830	17	5.4	17	70	14	73	80	14	3	2	0.93
471741--471795	28	2.0	28	88	0	83	80	12	5	1	0.97
473098--473514	28	14.5	28	80	6	359	30	30	16	21	1.95
473095--473514	56	7.3	56	80	6	412	30	31	16	21	1.95
473096--473514	172	2.4	171	80	5	468	30	31	16	21	1.95
474443--474493	20	2.5	20	100	0	102	31	15	13	39	1.87
477817--477930	48	2.4	48	85	2	140	42	7	7	42	1.59
477957--478157	60	3.3	60	88	2	287	46	7	4	41	1.54
478150--478275	48	2.6	48	86	2	173	41	11	8	38	1.72
480842--480881	19	2.2	19	86	4	55	40	2	0	57	1.12

Tables:   1   2   3   4   5   6   7   8