genome.fa.s91.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold91
Parameters: 2 7 7 80 10 50 1000
Length:  1327174

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481038--481083	14	3.4	13	82	8	56	71	0	0	28	0.86
481049--481109	16	4.1	14	75	17	61	75	0	0	24	0.80
481047--481120	24	3.1	24	79	9	73	71	0	0	28	0.86
481052--481122	19	3.7	19	81	12	67	70	0	0	29	0.88
481050--481118	11	6.1	11	77	11	68	72	0	0	27	0.85
481046--481202	6	26.2	6	68	19	62	63	0	0	36	0.95
481081--481150	17	4.4	17	71	8	58	57	0	0	42	0.99
492202--492448	79	3.1	79	90	2	363	34	14	24	27	1.94
493628--493679	21	2.5	21	96	0	95	19	25	5	50	1.69
493628--493686	21	2.8	21	92	2	82	20	25	5	49	1.69
493713--493739	14	1.9	14	100	0	54	25	0	7	66	1.17
494395--494537	61	2.3	61	84	2	171	32	18	22	26	1.97
494558--494689	55	2.4	54	82	6	149	25	16	26	31	1.96
494609--494778	93	1.8	93	85	2	243	22	16	30	30	1.96
494394--494837	148	2.9	148	85	4	557	27	17	27	27	1.98
494702--494947	55	4.4	56	81	8	302	23	19	28	28	1.98
494700--494951	116	2.2	109	87	6	353	23	19	28	28	1.98
494965--495110	61	2.4	61	82	4	186	26	18	26	28	1.98
497523--497548	13	2.0	13	100	0	52	30	15	15	38	1.88
497607--497645	20	2.0	20	100	0	78	33	20	15	30	1.94
501767--501820	27	2.0	27	96	0	99	31	24	22	22	1.98
507507--507785	79	3.5	79	94	0	477	31	15	25	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509202--509344	35	4.1	35	94	0	252	19	30	6	43	1.76
509315--509355	21	2.0	21	95	4	75	19	21	4	53	1.63
509367--509394	6	4.7	6	100	0	56	28	0	0	71	0.86
509507--509563	26	2.2	26	84	3	80	36	0	5	57	1.21
513227--513304	15	5.4	14	77	13	59	39	5	1	53	1.31
513290--513335	24	1.9	24	90	0	74	45	2	0	52	1.13
515166--515235	21	3.2	21	76	11	68	11	21	31	35	1.89
515171--515216	24	1.9	24	90	0	74	10	21	30	36	1.88
515225--515315	31	2.9	31	82	7	105	30	16	32	19	1.94
515838--515897	31	1.9	31	90	6	95	20	23	20	36	1.95
515955--515999	19	2.3	20	84	3	56	22	2	0	75	0.91
516502--517050	42	13.1	42	83	1	609	38	19	29	13	1.89
527311--527335	13	1.9	13	100	0	50	32	16	16	36	1.90
527324--527468	52	2.8	50	86	6	200	34	18	17	29	1.94
535631--536079	30	14.7	31	76	7	366	24	29	17	28	1.97
535630--536048	61	6.9	61	86	5	564	24	28	17	28	1.98
535631--536021	30	12.7	30	79	12	395	25	28	17	28	1.98
536089--536141	28	1.9	28	84	3	72	22	37	13	26	1.91
536089--536148	28	2.2	27	82	5	68	21	36	11	30	1.89
536024--536429	37	12.0	33	80	14	438	19	34	12	33	1.89
536115--536429	70	4.5	70	93	1	528	20	34	11	34	1.88
536053--536429	140	2.7	140	89	6	551	19	34	11	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536431--536501	34	2.1	35	97	2	135	25	36	16	21	1.94
536429--536508	34	2.5	32	88	11	128	26	38	16	18	1.92
536501--537125	49	13.0	49	82	6	640	25	26	17	30	1.97
536501--537059	98	5.9	98	86	7	753	25	26	18	29	1.98
538026--538050	13	1.9	13	100	0	50	32	16	16	36	1.90
538059--538183	52	2.4	52	91	0	205	36	16	17	29	1.92
545007--545064	16	3.6	16	84	15	75	86	12	0	1	0.65
545007--545063	21	2.7	20	91	8	87	85	12	0	1	0.66
545011--545064	28	2.0	29	85	10	78	87	11	0	1	0.63
546314--546429	34	3.5	34	89	6	159	23	29	13	33	1.93
546314--546442	34	3.9	33	83	8	138	21	30	14	33	1.94
546437--547024	34	18.9	33	76	12	402	20	32	13	34	1.91
546417--546812	95	4.3	94	80	10	405	20	31	12	34	1.90
546504--547024	27	17.2	27	74	14	200	20	32	13	33	1.91
546470--547024	61	9.1	60	72	16	360	20	32	13	34	1.91
547021--547489	87	5.4	87	89	1	695	28	26	17	27	1.98
547242--547938	49	14.6	49	73	13	499	25	26	17	29	1.98
547021--547489	175	2.7	175	89	0	724	28	26	17	27	1.98
547470--547641	88	1.9	90	86	3	249	26	26	19	27	1.99
547564--547934	101	3.7	101	79	5	367	23	25	17	32	1.97
548713--548775	19	3.7	18	70	24	55	36	14	15	33	1.88
548711--548782	32	2.2	32	97	0	135	37	13	15	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555205--555248	10	4.3	10	91	2	70	84	15	0	0	0.63
555201--555262	31	2.0	30	84	3	79	82	16	1	0	0.75
555208--555260	26	2.0	27	85	7	72	83	15	1	0	0.74
555186--555239	5	10.0	5	78	13	54	77	18	1	1	0.95
555250--555299	25	2.0	26	84	4	66	68	10	16	6	1.38
556510--556664	34	4.6	33	88	6	215	21	29	14	35	1.92
556676--557381	34	22.8	33	73	14	459	19	32	13	34	1.90
556621--557344	61	11.8	60	77	15	478	20	33	13	33	1.91
556652--557381	95	7.9	92	78	11	520	20	32	13	33	1.91
556835--557351	27	17.3	27	69	14	165	19	33	13	33	1.91
556621--557344	122	5.9	120	79	12	533	20	33	13	33	1.91
557378--557959	52	11.8	49	75	9	441	25	25	17	30	1.97
557435--557609	88	2.0	90	88	3	264	26	27	19	26	1.99
557526--557915	101	3.8	101	77	4	354	24	25	18	31	1.97
557526--557863	153	2.2	151	84	2	444	25	25	18	31	1.98
557526--557913	153	2.5	154	82	2	408	24	25	18	31	1.97
558814--558841	13	2.2	13	100	0	56	28	7	17	46	1.75
565247--565303	19	2.9	19	89	2	87	31	15	17	35	1.92
565349--565378	13	2.3	13	94	0	51	33	13	13	40	1.83
565332--565399	33	2.1	33	86	5	93	35	11	14	38	1.83
567597--567646	21	2.4	21	80	9	59	58	6	12	24	1.56
573420--573460	22	1.9	22	85	5	57	41	2	34	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574048--574102	19	2.8	19	86	5	74	30	12	18	38	1.88
574048--574101	20	2.8	20	88	2	74	29	12	18	38	1.88
574147--574176	13	2.3	13	100	0	60	33	16	13	36	1.88
574130--574197	33	2.1	33	91	5	111	33	13	16	36	1.87
576376--576503	50	2.6	49	92	2	202	26	18	14	40	1.89
578780--579051	78	3.5	77	76	11	266	27	25	12	34	1.92
578780--579069	79	3.7	78	75	9	259	28	26	12	32	1.93
581157--581190	4	8.8	4	87	6	52	23	2	0	73	0.97
584143--584217	27	2.8	27	95	0	141	44	9	22	24	1.82
591256--591281	13	2.0	13	100	0	52	30	23	15	30	1.95
591337--591392	21	2.6	22	94	5	105	37	10	25	26	1.88
591380--591410	10	3.1	10	90	0	53	41	6	29	22	1.78
591434--591570	53	2.6	53	92	1	229	27	16	18	38	1.91
591540--591610	20	3.5	20	73	17	67	28	12	15	43	1.83
591650--591690	21	2.0	21	85	9	57	39	9	12	39	1.76
593316--593340	13	1.9	13	100	0	50	32	16	16	36	1.90
597086--597111	13	2.0	13	100	0	52	30	23	15	30	1.95
597167--597222	21	2.6	22	94	5	105	37	10	25	26	1.88
597210--597240	10	3.1	10	90	0	53	41	6	29	22	1.78
597264--597400	53	2.6	53	92	1	229	27	16	18	38	1.91
597370--597440	20	3.5	20	73	17	67	28	12	15	43	1.83
597480--597520	21	2.0	21	85	9	57	39	9	12	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598848--599310	167	2.8	163	80	10	419	30	12	8	48	1.70
600514--600553	20	2.0	20	90	5	62	40	22	15	22	1.91
600542--600614	20	3.7	19	75	8	67	32	13	15	38	1.86
600545--600592	19	2.5	20	86	3	62	33	12	14	39	1.84
600652--600707	20	2.8	20	83	2	67	30	12	17	39	1.87
600891--600929	20	2.0	20	85	10	53	64	7	20	7	1.45
605837--605909	20	3.7	20	89	7	105	28	19	15	36	1.92
605959--605985	13	2.1	13	100	0	54	40	14	14	29	1.86
609504--609630	48	2.6	49	90	6	195	48	3	21	26	1.65
613966--614080	50	2.2	52	90	3	180	41	10	15	32	1.81

Tables:   1   2   3   4   5   6   7   8