genome.fa.s91.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold91
Parameters: 2 7 7 80 10 50 1000
Length:  1327174

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250273--1250339	33	2.0	33	88	0	98	34	11	13	40	1.81
1250293--1250317	13	1.9	13	100	0	50	36	16	16	32	1.90
1250380--1250404	13	1.9	13	100	0	50	32	16	16	36	1.90
1250413--1250529	52	2.3	52	92	4	193	33	17	17	31	1.93
1252921--1252967	16	3.1	15	74	14	51	80	6	10	2	0.96
1253917--1254001	30	2.8	31	80	3	100	24	24	17	32	1.97
1253965--1254376	33	12.4	34	80	11	396	20	32	13	33	1.91
1253978--1254396	34	12.4	34	80	9	366	21	33	12	32	1.90
1253978--1254396	71	6.2	70	79	11	446	21	33	12	32	1.90
1254174--1254396	69	3.3	70	80	11	225	21	33	12	33	1.90
1254386--1254615	33	7.0	33	88	6	333	28	35	18	17	1.94
1254378--1254615	67	3.6	67	89	5	360	28	35	17	18	1.94
1254615--1255609	49	20.8	48	84	8	1257	25	26	18	30	1.98
1254827--1254894	21	3.2	21	65	19	50	26	29	17	26	1.98
1254957--1255618	92	7.0	92	93	3	986	24	25	18	30	1.98
1256437--1256503	33	2.0	33	88	0	98	34	11	13	40	1.81
1256457--1256481	13	1.9	13	100	0	50	36	16	16	32	1.90
1263778--1264477	159	4.4	159	69	11	425	31	19	14	35	1.91
1263663--1266095	476	5.1	474	83	3	2879	32	18	13	36	1.90
1266340--1266532	99	1.9	99	86	0	269	30	19	16	33	1.94
1272782--1274841	476	4.3	475	82	4	2362	32	18	13	35	1.90
1275244--1275308	33	2.0	32	88	11	96	33	15	18	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275264--1275288	13	1.9	13	100	0	50	36	16	16	32	1.90
1275654--1276386	365	2.0	365	99	0	1439	30	17	17	34	1.93
1281571--1281719	52	2.9	51	88	4	226	30	16	18	33	1.94
1281708--1281732	13	1.9	13	100	0	50	36	16	16	32	1.90
1281777--1281839	33	1.9	33	86	0	90	42	15	9	31	1.79
1282800--1282944	49	3.0	49	86	4	204	31	16	26	26	1.97
1282714--1282941	48	4.8	47	80	11	252	31	17	24	26	1.97
1282714--1282941	97	2.4	92	86	7	298	31	17	24	26	1.97
1282987--1283304	30	10.7	30	81	9	303	25	16	28	29	1.96
1283020--1283239	123	1.8	123	84	5	304	24	15	30	29	1.96
1284742--1284844	1	103.0	1	74	0	80	0	0	13	86	0.57
1284742--1284844	18	5.6	17	81	15	116	0	0	13	86	0.57
1284744--1284845	11	9.0	11	82	10	109	0	0	14	85	0.60
1284743--1284833	13	7.3	12	81	10	112	0	0	13	86	0.56
1292938--1292984	21	2.3	21	76	23	55	42	4	19	34	1.70
1293105--1293143	13	3.0	13	88	0	60	38	15	15	30	1.88
1293129--1293207	20	3.7	20	78	15	77	44	15	15	25	1.85
1295223--1295253	15	2.1	15	93	0	53	12	22	16	48	1.80
1297057--1297101	21	2.1	21	84	8	56	22	20	4	53	1.63
1299309--1299334	13	2.0	13	100	0	52	30	15	15	38	1.88
1300385--1300562	31	5.6	31	78	8	153	23	26	15	34	1.94
1300385--1300562	33	5.5	33	79	7	179	23	26	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1300542--1300618	27	2.9	27	84	0	109	24	36	16	22	1.94
1300563--1300721	66	2.6	60	75	12	167	22	32	11	34	1.89
1300591--1300897	33	9.8	33	75	11	168	21	31	12	34	1.91
1300593--1300749	66	2.4	65	84	1	197	20	30	12	36	1.89
1300690--1300862	27	6.0	27	74	15	139	21	31	13	33	1.92
1300690--1300842	61	2.5	60	83	3	191	20	31	12	35	1.90
1300786--1300898	27	4.0	27	77	13	118	23	30	14	31	1.94
1300659--1300902	88	2.7	88	82	5	292	20	30	13	35	1.91
1300876--1300970	29	3.3	29	82	8	106	33	31	16	17	1.93
1300898--1300983	28	3.0	29	80	13	88	32	30	17	19	1.95
1300987--1301415	49	8.8	49	78	9	391	25	25	18	30	1.98
1301136--1301368	48	4.8	48	80	4	268	25	26	18	29	1.98
1301129--1301367	100	2.4	97	86	3	327	25	26	17	29	1.98
1301967--1302029	19	3.6	19	76	24	84	33	11	19	36	1.87
1301967--1302046	32	2.5	32	93	2	135	33	11	18	36	1.87
1305698--1305723	13	2.0	13	100	0	52	38	15	15	30	1.88
1305680--1305743	32	2.0	33	87	3	94	39	17	14	29	1.88
1307198--1307237	13	3.1	13	81	0	53	35	17	12	35	1.88
1308689--1308752	33	1.9	33	90	0	101	26	29	17	26	1.97
1309684--1309710	13	2.1	13	100	0	54	29	14	14	40	1.86
1309695--1309750	19	2.8	20	91	2	87	30	16	16	37	1.90
1309691--1309756	20	3.4	19	83	8	89	33	13	16	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1311181--1311462	151	1.9	151	90	1	449	31	15	9	42	1.80
1311314--1313653	476	4.9	475	80	5	2632	32	18	13	36	1.89
1311314--1313636	945	2.4	944	81	4	2753	32	18	13	36	1.89
1312875--1313544	159	4.2	158	68	11	402	32	17	13	36	1.89
1313686--1316148	919	2.6	922	82	5	2853	31	19	13	36	1.90
1314396--1316148	473	3.7	473	83	5	2160	31	18	13	36	1.90
1316000--1316299	151	2.0	151	92	0	501	33	16	10	39	1.83
1317182--1317244	33	1.9	33	83	6	83	33	15	14	36	1.88
1317274--1317366	20	4.7	19	78	15	82	38	16	15	30	1.89
1317636--1320715	475	6.5	474	81	3	3304	31	18	13	35	1.90
1317636--1320715	950	3.2	943	82	3	3664	31	18	13	35	1.90
1320293--1321138	422	2.0	421	82	4	1026	31	19	13	35	1.91
1320714--1323638	476	6.2	474	79	5	2807	31	18	13	36	1.90
1323930--1325883	475	4.1	472	81	4	1941	31	19	13	35	1.90

Tables:   1   2   3   4   5   6   7   8

The End!