genome.fa.s91.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold91
Parameters: 2 7 7 80 10 50 1000
Length:  1327174

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065694--1065718	13	1.9	13	100	0	50	32	16	16	36	1.90
1065674--1065738	33	2.0	33	87	6	96	32	18	15	33	1.92
1065788--1065815	13	2.2	13	100	0	56	42	14	14	28	1.84
1065769--1065834	33	2.0	33	93	0	114	40	15	13	30	1.85
1065769--1065834	20	3.7	20	69	26	65	40	15	13	30	1.85
1066130--1066231	43	2.4	43	91	0	159	34	12	13	39	1.83
1066281--1066342	32	1.9	33	83	3	81	37	12	19	30	1.89
1068197--1068251	16	3.4	16	75	5	56	49	1	5	43	1.36
1068962--1068987	2	13.0	2	100	0	52	50	0	0	50	1.00
1069705--1069770	27	2.5	27	78	9	64	43	6	1	48	1.36
1070202--1070257	19	2.9	19	84	7	78	32	16	17	33	1.92
1072110--1072135	13	2.0	13	100	0	52	46	15	7	30	1.74
1076637--1076686	21	2.4	22	83	9	61	32	20	0	48	1.50
1078304--1078348	22	2.0	24	86	8	67	33	4	20	42	1.72
1078921--1078947	13	2.1	13	100	0	54	29	14	14	40	1.86
1078905--1078966	32	2.0	30	87	6	88	29	14	14	41	1.85
1078931--1078987	19	2.9	19	86	2	78	31	14	17	36	1.89
1086592--1086789	74	2.6	76	81	5	242	42	6	8	42	1.59
1087236--1087261	13	2.0	13	100	0	52	38	15	15	30	1.88
1093373--1093452	20	3.8	20	75	15	79	26	15	15	43	1.85
1093438--1093476	13	3.0	13	96	0	69	30	17	15	35	1.91
1093597--1093643	21	2.3	21	79	20	55	34	21	4	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093599--1093641	20	2.2	19	84	16	52	32	20	4	41	1.73
1095378--1095442	31	2.1	31	100	0	130	53	0	15	30	1.42
1096050--1096075	13	2.0	13	100	0	52	38	15	15	30	1.88
1096032--1096095	32	2.0	33	87	3	94	40	17	14	28	1.88
1097852--1097901	21	2.3	21	80	10	57	56	4	18	22	1.58
1099699--1099729	15	2.1	15	93	0	53	48	16	22	12	1.80
1101810--1101835	13	2.0	13	100	0	52	30	15	15	38	1.88
1106379--1106425	16	2.8	17	83	6	60	17	2	19	61	1.44
1107150--1107224	35	2.2	35	95	2	134	41	16	6	36	1.74
1108133--1108194	25	2.4	27	84	15	96	51	9	11	27	1.69
1111447--1111495	20	2.3	20	86	6	62	32	14	8	44	1.74
1117540--1117629	23	3.8	24	67	12	51	50	3	6	40	1.45
1123258--1123449	55	3.5	55	76	6	210	36	17	24	21	1.94
1126262--1126291	2	15.0	2	100	0	60	50	0	0	50	1.00
1128440--1128477	20	1.9	20	100	0	76	26	15	13	44	1.83
1128464--1128488	13	1.9	13	100	0	50	32	16	16	36	1.90
1136985--1137049	33	2.0	33	84	6	87	30	16	15	36	1.90
1138819--1138857	20	1.9	21	94	5	71	35	23	15	25	1.94
1138847--1138918	20	3.7	19	75	7	65	36	12	12	38	1.81
1138944--1138998	20	2.7	20	82	2	65	32	16	12	38	1.86
1141600--1141655	19	2.8	21	83	10	80	33	17	14	33	1.90
1144939--1144964	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1144919--1144982	33	2.0	33	90	3	103	26	14	17	42	1.87
1147554--1147671	51	2.3	51	86	8	159	32	22	11	33	1.91
1147690--1147860	52	3.3	51	76	11	177	28	26	12	32	1.93
1147558--1147803	132	1.9	131	83	6	327	29	24	13	33	1.93
1147848--1147916	28	2.5	28	88	9	97	24	31	17	26	1.97
1147551--1147888	184	1.8	184	87	5	504	29	25	11	32	1.92
1149611--1149651	20	2.0	22	90	9	68	34	26	2	36	1.70
1151352--1151398	21	2.3	20	78	10	51	42	4	19	34	1.70
1151521--1151559	13	3.0	13	96	0	69	35	15	17	30	1.91
1151546--1151625	20	3.7	20	75	18	79	40	13	16	30	1.87
1164178--1164251	19	3.7	20	83	8	80	33	18	17	29	1.94
1170861--1170886	13	2.0	13	100	0	52	38	15	15	30	1.88
1173107--1173151	21	2.1	21	84	8	56	53	4	20	22	1.63
1174955--1174985	15	2.1	15	93	0	53	48	16	22	12	1.80
1176385--1176495	27	4.0	27	82	10	143	32	0	32	35	1.58
1176386--1176505	30	4.2	30	74	5	72	30	0	35	34	1.58
1177154--1177192	20	1.9	21	94	5	71	38	23	12	25	1.90
1177182--1177236	19	2.8	20	83	5	85	29	16	16	38	1.90
1182451--1182502	20	2.5	20	81	3	59	34	17	15	32	1.91
1183519--1183821	78	3.9	77	80	5	299	35	13	23	27	1.92
1183780--1183876	28	3.5	27	92	4	167	29	20	26	22	1.99
1183566--1183822	78	3.3	79	84	2	324	34	13	24	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1186334--1186389	20	2.8	20	86	0	85	48	14	10	26	1.76
1188428--1188464	19	1.9	19	94	0	65	10	8	56	24	1.60
1188967--1188998	15	2.1	15	94	0	55	43	9	9	37	1.69
1188989--1189089	48	2.1	49	85	5	134	40	16	11	30	1.85
1193670--1193719	19	2.6	19	87	3	64	40	18	12	30	1.86
1196225--1196260	18	1.9	19	94	5	65	22	16	25	36	1.94
1199048--1199072	13	1.9	13	100	0	50	36	16	16	32	1.90
1199025--1199092	33	2.1	33	88	2	102	33	13	16	36	1.87
1199124--1199175	20	2.5	21	84	3	70	26	17	15	40	1.89
1201037--1201061	13	1.9	13	100	0	50	32	16	16	36	1.90
1201017--1201081	33	2.0	33	88	11	98	33	18	15	32	1.92
1201111--1201165	19	2.8	19	91	2	83	36	16	16	30	1.91
1202226--1202253	13	2.2	13	100	0	56	39	17	14	28	1.89
1203066--1203185	20	5.6	20	74	16	114	40	11	16	30	1.84
1206209--1206281	10	7.3	10	74	10	51	83	9	0	6	0.81
1206229--1206275	8	5.6	8	84	5	58	85	14	0	0	0.61
1206205--1206281	19	3.9	19	79	6	75	83	10	0	6	0.82
1206205--1206274	20	3.6	19	77	15	63	82	11	0	5	0.82
1207494--1208485	28	34.5	28	83	6	929	29	29	17	23	1.97
1209657--1209753	50	1.9	50	89	4	151	25	16	10	47	1.78
1209717--1209773	20	2.8	20	89	0	87	29	14	10	45	1.78
1209667--1209822	72	2.2	72	89	2	235	27	15	10	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1210636--1210683	21	2.4	22	80	16	59	22	22	10	43	1.84
1211003--1211059	19	2.9	19	89	2	87	31	17	15	35	1.92
1211091--1211173	20	4.5	19	69	27	72	34	16	16	31	1.92
1211089--1211153	33	2.0	32	88	11	96	36	15	15	32	1.89
1211091--1211207	53	2.2	53	100	0	234	35	15	16	32	1.90
1211144--1211206	33	1.9	32	87	12	92	36	15	15	31	1.90
1211124--1211207	20	4.6	20	70	29	87	35	14	16	33	1.89
1217498--1217537	21	1.9	21	94	0	71	30	17	0	52	1.45
1217499--1217546	21	2.3	20	86	10	62	35	20	0	43	1.52
1223617--1224604	475	2.1	474	78	6	1018	31	18	13	37	1.89
1224830--1226734	474	4.0	475	82	5	2151	32	18	13	35	1.90
1226362--1227065	365	1.9	365	93	2	1200	32	16	14	36	1.90
1226729--1230227	476	7.4	476	82	3	4026	31	18	13	36	1.90
1230461--1230517	20	2.8	21	84	7	82	21	15	17	45	1.85
1230499--1230528	13	2.3	13	100	0	60	30	16	13	40	1.87
1230544--1230617	20	3.7	20	85	10	89	31	14	14	39	1.87
1232955--1233010	28	1.9	28	89	7	85	21	25	19	33	1.97
1232992--1233122	51	2.6	51	81	3	160	30	22	9	36	1.87
1233048--1233307	79	3.3	79	74	5	258	28	23	11	35	1.91
1232940--1233187	130	1.9	127	81	7	295	29	23	11	35	1.90
1233048--1233341	78	3.7	79	75	7	242	28	24	12	34	1.91
1234325--1235939	476	3.4	472	82	3	1965	31	17	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1235935--1236460	241	2.2	242	90	1	804	31	19	11	38	1.87
1238606--1238938	158	2.1	158	80	8	367	29	18	16	34	1.93
1240333--1240358	13	2.0	13	100	0	52	38	15	15	30	1.88
1240311--1240378	33	2.1	32	88	2	100	33	13	19	33	1.90
1240411--1240463	20	2.6	21	78	3	63	28	15	15	41	1.87
1240451--1240475	13	1.9	13	100	0	50	36	16	16	32	1.90
1247756--1248009	124	2.0	124	96	0	481	28	17	20	34	1.95
1248121--1248146	13	2.0	13	100	0	52	38	15	15	30	1.88
1248104--1248166	33	1.9	33	86	0	90	38	17	15	28	1.91
1248185--1248260	32	2.4	32	90	0	116	32	17	14	35	1.90

Tables:   1   2   3   4   5   6   7   8