genome.fa.s257.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168082.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_33, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  671528

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 839 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293866--295184	358	3.7	356	82	6	1395	40	8	9	41	1.67
295274--295542	136	2.0	135	80	4	299	42	7	8	40	1.64
295406--297301	180	10.7	179	74	9	1211	40	8	9	41	1.67
295523--300079	360	12.9	357	71	12	1743	40	7	9	42	1.66
296459--296785	168	1.9	168	83	6	421	39	6	10	44	1.64
296096--297150	528	2.0	531	82	5	1269	40	7	9	42	1.66
297040--297627	321	1.8	323	84	4	803	41	7	9	41	1.64
297295--300163	181	16.0	181	76	7	2062	40	7	9	42	1.66
297295--300163	361	8.0	360	75	9	2122	40	7	9	42	1.66
300533--300921	181	2.2	181	80	5	437	42	7	8	40	1.64
300605--300976	181	2.1	180	80	3	406	43	9	8	38	1.67
301007--303510	180	14.1	179	72	10	1270	40	7	9	42	1.67
301007--303510	361	7.0	355	73	10	1534	40	7	9	42	1.67
302509--302838	162	2.0	162	81	3	387	39	7	12	40	1.72
304334--305519	181	6.5	177	72	13	445	41	8	10	40	1.68
304709--304745	19	1.9	19	100	0	74	32	5	16	45	1.70
304710--304751	19	2.2	19	91	0	66	38	9	11	40	1.75
304729--305525	179	4.5	179	77	9	734	41	8	9	40	1.68
304729--305525	357	2.2	352	80	7	869	41	8	9	40	1.68
305061--306452	470	3.0	466	83	5	1628	41	9	10	38	1.73
306337--307354	180	5.7	180	75	7	809	41	6	10	41	1.66
306030--307354	350	3.7	357	78	7	1044	40	7	10	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307719--308127	216	1.9	214	81	5	502	41	11	7	38	1.71
307939--308783	181	4.7	180	78	5	773	41	10	7	40	1.68
308577--308605	14	2.0	15	93	6	51	51	0	0	48	1.00
308142--308793	358	1.8	358	81	2	826	41	9	7	41	1.66
308862--313520	181	26.4	176	69	13	1037	41	9	8	40	1.69
308829--309829	533	1.9	532	88	2	1532	40	10	8	40	1.71
309641--309682	19	2.3	19	87	4	59	57	0	2	40	1.12
309938--313520	181	20.1	182	74	8	2268	41	9	8	39	1.69
309944--315898	181	33.6	177	71	11	2126	41	9	8	39	1.68
309921--315761	359	16.5	356	72	12	1350	41	9	8	39	1.69
311819--311854	16	2.1	17	90	10	56	38	11	5	44	1.63
309939--315894	541	11.2	536	73	10	2464	41	9	8	39	1.68
313522--315898	177	13.5	180	74	10	1452	42	10	8	39	1.68
313568--314393	176	4.7	174	78	9	464	41	10	8	39	1.69
312212--314813	717	3.7	686	75	10	1758	42	9	8	39	1.68
314661--315095	162	2.6	163	76	9	418	41	10	7	40	1.68
315783--316027	132	1.9	132	83	1	321	44	8	7	39	1.63
316192--317420	181	6.8	181	74	5	903	42	9	7	40	1.67
316306--317302	361	2.8	359	78	6	942	41	9	7	40	1.67
317014--317043	16	1.9	15	93	6	51	46	6	0	46	1.29
317622--317894	141	1.9	141	80	5	320	39	8	9	41	1.69
318841--318870	12	2.5	12	94	0	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319419--319464	24	1.9	24	83	16	60	43	6	10	39	1.66
319471--319764	155	1.9	150	82	6	360	43	8	8	39	1.66
319660--320158	179	2.8	177	78	7	530	41	11	7	40	1.67
320541--321105	177	3.2	178	82	4	620	40	8	10	41	1.69
320869--321451	321	1.8	321	82	3	762	39	7	10	42	1.67
321190--322659	181	8.1	181	74	6	962	40	7	9	42	1.65
321190--322706	543	2.8	538	77	4	1446	40	7	9	42	1.65
322691--322719	13	2.2	13	100	0	58	44	6	13	34	1.71
322771--323956	181	6.6	181	75	6	894	40	8	9	41	1.67
323005--325154	361	6.0	363	74	9	1076	41	8	9	41	1.67
324054--324127	23	3.2	24	73	7	89	35	5	4	55	1.42
324039--324127	46	1.9	46	88	0	133	35	5	3	55	1.40
324095--325243	181	6.4	178	78	5	1029	41	8	8	41	1.67
325258--325557	163	1.8	165	80	7	360	43	7	7	42	1.59
325426--327565	181	12.1	173	71	14	811	40	7	10	42	1.67
326168--327574	181	7.9	178	73	10	835	39	7	10	42	1.68
326638--326953	162	1.9	163	83	4	406	38	7	10	43	1.68
326149--327501	704	1.9	703	85	3	1862	39	7	10	43	1.67
327525--327609	35	2.4	35	94	0	143	36	9	16	37	1.81
327560--329112	181	8.7	180	73	9	1024	39	8	10	41	1.69
329304--329409	15	7.0	15	66	24	62	50	0	0	49	1.07
329308--329407	10	9.9	10	69	24	68	50	1	0	49	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329735--329805	29	2.4	29	79	9	74	50	0	1	47	1.09
329754--329841	6	14.7	6	73	18	51	48	0	0	51	1.00
329795--329841	10	4.9	10	80	14	55	48	0	0	51	1.00
329811--329844	7	5.0	7	89	7	52	47	0	0	52	1.00
329792--329834	16	2.8	15	86	13	61	46	0	0	53	1.00
329774--329838	24	2.7	24	85	7	78	47	0	0	52	1.00
329792--329841	14	3.4	14	82	17	66	48	0	0	52	1.00
330917--331369	177	2.5	174	79	9	459	43	11	7	38	1.69
331754--331792	6	6.7	6	82	5	53	48	2	2	46	1.29
331754--331793	17	2.3	17	86	4	53	50	2	2	45	1.28
332633--332671	20	1.9	21	89	5	62	48	2	0	48	1.15
332640--332691	27	1.9	27	84	7	70	50	1	0	48	1.12
332804--332843	21	1.9	21	89	0	62	42	5	0	52	1.23
334181--334222	14	2.6	17	75	21	54	47	0	0	52	1.00
334173--334295	20	6.2	20	67	24	73	52	1	0	46	1.10
334163--334302	28	4.3	33	67	27	84	54	1	0	44	1.09
334636--334685	9	5.7	9	75	13	50	52	2	0	46	1.12
334682--334761	17	4.6	16	75	16	54	47	0	0	52	1.00
334658--334731	30	2.5	28	77	18	69	51	0	0	48	1.00
334713--334757	13	3.7	13	74	14	51	48	0	0	51	1.00
335023--335070	24	2.0	23	88	11	71	43	2	2	52	1.24
335638--335734	51	1.9	50	91	2	158	54	8	10	26	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335659--335757	51	1.9	51	81	0	117	56	10	8	25	1.59
336218--336262	20	2.3	20	81	14	58	51	2	0	46	1.13
336222--336261	19	2.1	19	86	9	55	47	2	0	50	1.14
336278--336346	14	4.7	15	71	18	56	49	1	1	47	1.19
336335--336397	29	2.2	28	82	5	81	44	0	3	52	1.17
336367--336406	19	2.0	20	86	13	57	52	0	2	45	1.14
337228--337261	12	2.6	13	86	13	52	50	8	0	41	1.34
338161--338315	43	3.5	43	74	14	145	33	15	12	38	1.86
338340--338418	22	3.7	21	83	6	88	39	17	7	35	1.78
338510--338888	188	2.0	189	86	2	530	28	25	10	35	1.88
338426--338949	63	8.3	63	79	6	467	28	25	10	36	1.88
338467--338983	251	2.1	252	83	4	659	28	25	9	35	1.88
340065--340113	24	2.2	21	89	10	71	0	12	8	79	0.93
341569--341611	18	2.4	18	80	11	52	39	0	0	60	0.97
342365--342429	25	2.5	25	79	20	71	50	1	1	46	1.20
342379--342429	12	4.1	13	80	10	61	52	1	0	45	1.12
342398--342439	22	1.9	22	85	9	59	57	0	0	42	0.99
342477--342526	15	3.1	15	83	16	57	48	2	0	50	1.12
342484--342530	19	2.5	20	80	19	57	51	2	0	46	1.13
342484--342542	16	3.6	16	75	15	50	50	1	0	47	1.11
342903--342995	23	3.7	24	76	17	82	43	1	2	53	1.19
342992--343045	19	3.1	18	77	17	60	42	0	3	53	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342959--343060	10	11.0	10	69	28	50	41	1	1	54	1.22
343173--343230	24	2.3	24	82	11	64	53	1	1	43	1.21
343631--343690	16	3.8	16	80	12	70	43	3	0	53	1.17
344274--344322	16	2.9	17	82	14	57	55	0	2	42	1.11
344328--344371	17	2.6	17	82	10	54	59	0	0	40	0.98
344511--344578	26	2.7	24	75	6	64	48	0	5	45	1.26
344663--344742	33	2.4	34	81	12	85	47	2	1	48	1.23
344665--344730	14	5.2	13	68	20	50	46	1	1	50	1.20
344878--344916	18	2.1	19	85	9	53	38	0	0	61	0.96
345188--345560	45	8.3	45	84	0	415	14	34	30	19	1.92

Tables:   1   2   3   4   5   6   7