genome.fa.s257.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168082.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_33, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  671528

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 839 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504941--505030	13	6.8	13	70	20	53	44	1	0	54	1.07
504945--504993	20	2.5	20	80	3	64	53	0	0	46	1.00
505207--505280	31	2.4	30	78	8	78	48	2	1	47	1.24
505228--505299	18	3.9	18	68	23	51	50	0	1	48	1.09
505232--505294	25	2.4	27	86	7	85	50	0	1	47	1.10
505225--505283	15	3.7	15	75	22	57	49	0	1	49	1.11
505504--505539	18	2.0	18	88	0	54	61	0	2	36	1.11
506489--506540	2	27.0	2	80	7	63	42	3	1	51	1.31
506489--506548	22	2.6	22	84	5	75	41	3	1	53	1.27
506500--506548	13	4.0	13	87	7	68	42	0	2	55	1.11
506781--506878	42	2.3	42	79	10	112	43	3	4	48	1.37
507006--507046	21	1.9	22	90	5	66	46	0	2	51	1.14
507035--507073	19	2.1	19	85	9	53	30	0	5	64	1.15
507072--507132	20	3.1	21	75	13	67	42	1	1	54	1.20
507086--507123	14	2.7	14	84	11	51	42	2	0	55	1.14
507152--507195	18	2.6	16	76	13	52	50	0	2	47	1.13
507340--507370	16	2.0	16	93	6	55	58	0	0	41	0.98
507475--507519	17	2.4	19	85	10	58	53	2	0	44	1.13
507584--507615	17	1.9	17	93	6	57	59	3	0	37	1.13
508083--508136	26	2.0	28	82	10	69	57	0	0	42	0.98
508462--508570	24	4.6	23	68	17	71	43	0	3	52	1.25
508462--508597	38	3.9	35	72	15	95	42	1	4	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508738--510034	181	7.3	176	73	9	560	42	8	7	41	1.64
508818--510038	176	6.9	178	73	10	856	42	8	8	41	1.65
510035--510086	17	3.1	16	79	17	61	51	5	1	40	1.37
510272--510321	22	2.3	22	83	13	59	44	4	2	50	1.32
510660--510691	12	2.7	12	95	0	55	56	3	6	34	1.40
512115--512172	19	3.1	19	85	5	64	50	1	0	48	1.11
512861--512911	22	2.4	22	83	3	68	45	1	0	52	1.12
513441--513546	22	4.7	23	74	18	89	49	1	2	46	1.27
513535--513577	18	2.4	19	80	11	54	48	0	2	48	1.14
513805--513857	21	2.7	19	76	21	56	43	1	5	49	1.37
514127--514156	8	3.6	8	95	4	51	50	0	0	50	1.00
514589--514636	13	3.5	13	75	13	51	47	0	0	52	1.00
514589--514637	20	2.3	21	80	16	57	48	0	0	51	1.00
514728--514759	14	2.1	16	88	11	50	53	0	3	43	1.16
515136--515206	32	2.4	27	75	22	72	52	1	1	45	1.18
515773--515841	29	2.3	29	76	16	70	46	1	0	52	1.09
515773--515841	22	3.2	22	69	26	58	46	1	0	52	1.09
516010--516151	61	2.2	64	78	12	150	47	2	4	45	1.36
516107--516161	23	2.3	24	87	3	76	45	0	1	52	1.11
516554--516602	11	4.3	11	78	17	55	59	0	0	40	0.98
516596--516636	22	2.0	20	85	9	55	56	4	2	36	1.34
516971--517165	107	1.9	106	92	4	333	49	2	3	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517053--517122	29	2.3	29	80	9	79	50	1	2	45	1.25
517547--517602	12	4.8	12	72	10	53	51	1	3	42	1.29
518731--518757	14	1.9	14	100	0	54	29	0	0	70	0.88
519034--519095	28	2.2	28	86	11	83	41	1	0	56	1.09
519180--519278	22	4.8	21	75	15	66	54	2	1	42	1.18
519231--519278	21	2.5	19	86	10	62	60	0	2	37	1.09
521717--521755	13	2.9	13	85	14	53	58	0	0	41	0.98
522074--522122	23	2.1	24	82	17	59	46	0	2	51	1.12
522466--522501	18	1.9	19	88	5	56	38	2	2	55	1.29
522559--522653	18	5.9	15	71	21	52	43	0	4	52	1.20
522592--522624	13	2.5	13	85	14	50	42	0	6	51	1.26
522592--522651	25	2.4	25	83	8	68	43	0	3	53	1.17
522619--522653	18	1.9	18	94	0	61	45	0	0	54	0.99
523488--523543	27	2.0	28	86	10	80	50	5	0	44	1.25
523724--523782	27	2.1	29	87	6	86	50	0	1	47	1.11
524133--524172	17	2.6	14	79	20	53	47	0	10	42	1.37
524340--524400	19	3.0	20	75	20	63	37	4	0	57	1.20
524329--524400	23	3.2	24	75	20	93	37	4	0	58	1.18
524327--524402	24	3.4	25	74	22	87	38	3	0	57	1.17
526115--526152	15	2.5	16	83	12	53	44	7	0	47	1.32
526365--526407	23	1.9	23	85	4	61	39	0	0	60	0.97
526387--526459	27	2.7	29	79	16	84	46	4	1	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526887--527201	174	1.8	174	85	4	447	39	9	9	40	1.72
527081--528086	179	5.6	177	73	7	698	39	7	11	41	1.70
527967--528215	129	1.9	129	84	0	327	42	7	10	39	1.67
527789--528410	310	2.0	306	81	3	710	40	7	9	41	1.66
528647--528682	17	2.1	18	89	5	56	36	0	8	55	1.30
528097--532897	181	26.8	177	72	11	2361	40	8	9	42	1.68
528162--538367	541	19.0	535	72	12	3378	40	8	9	41	1.69
530943--531265	177	1.8	177	80	1	387	41	9	10	39	1.72
531263--531312	20	2.5	20	100	0	100	46	0	0	54	1.00
531669--532545	180	5.0	172	73	12	386	38	9	9	42	1.69
531384--536653	361	14.7	352	71	12	1422	40	8	10	41	1.70
533534--536900	181	18.6	179	74	9	2109	40	8	9	40	1.70
534504--536668	721	3.0	712	78	6	1918	41	9	9	40	1.70
536907--538416	180	8.5	179	78	6	1074	40	7	10	41	1.69
536912--538416	530	2.8	525	76	8	1306	40	7	10	41	1.69
538505--539144	180	3.6	178	79	3	620	41	8	10	39	1.70
539108--539140	18	1.9	17	88	11	50	48	6	6	39	1.53
539103--539149	19	2.7	18	80	12	62	44	4	10	40	1.59
539302--539347	17	2.6	19	83	13	62	47	8	4	39	1.54
539899--539939	21	2.1	20	86	13	59	39	7	4	48	1.52
539166--544045	181	27.4	181	76	7	3666	41	9	8	40	1.68
539166--545524	361	17.7	359	73	10	3645	40	9	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543450--544649	604	2.0	604	79	7	1292	41	9	7	41	1.65
544106--545162	360	2.9	359	79	6	1009	41	9	7	41	1.65
544042--545514	181	8.3	181	73	8	914	39	9	8	41	1.68
545408--545649	120	2.0	119	87	2	351	35	12	8	44	1.72
546169--546222	23	2.3	24	84	9	67	61	5	1	31	1.30
545722--547472	357	4.9	356	74	8	1238	42	9	8	39	1.69
546605--546637	18	1.9	17	88	11	50	33	6	12	48	1.65
547142--547174	18	1.9	17	88	11	50	39	12	6	42	1.67
546934--547275	179	1.9	178	82	7	424	43	9	7	39	1.65
547125--547435	170	1.8	170	82	1	399	41	12	6	39	1.69
547565--547836	82	3.2	81	64	31	185	38	8	8	45	1.64
548214--550244	181	11.3	179	77	8	1676	42	9	8	39	1.68
550114--550398	157	1.8	157	80	3	340	36	10	9	43	1.71
550271--550975	179	3.9	180	73	9	496	41	8	9	40	1.69
550834--551140	158	1.9	158	81	6	363	43	10	7	38	1.67
550984--552602	181	9.0	181	76	6	1214	42	9	7	40	1.65
550984--554366	361	9.5	362	74	8	2155	42	9	7	40	1.65
551067--552602	717	2.1	712	77	7	1521	43	9	6	40	1.65
552586--554171	180	8.9	181	73	8	960	42	8	8	40	1.65
552670--553865	543	2.2	540	80	4	1318	42	9	8	40	1.66
552952--554157	363	3.4	360	76	8	850	42	8	8	40	1.65
554376--555785	182	7.9	180	72	9	922	42	9	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555157--556918	689	2.5	684	78	7	1674	42	8	8	40	1.66
556467--557035	181	3.2	179	82	1	620	40	8	9	41	1.68
557149--561652	181	24.9	180	69	12	1598	39	8	9	42	1.68
557171--559174	358	5.6	351	73	10	895	39	8	10	42	1.68
557216--559242	538	3.8	531	74	8	1460	39	8	10	42	1.68
557149--559242	182	11.7	179	74	9	1173	39	8	10	42	1.68
559476--560349	347	2.5	342	78	6	806	40	9	9	41	1.69
559734--561428	347	4.8	342	72	12	898	41	7	9	41	1.67
560819--560864	23	1.9	25	82	8	60	52	6	13	28	1.65
560566--561652	180	6.1	179	76	8	873	40	7	10	42	1.67

Tables:   1   2   3   4   5   6   7