genome.fa.s257.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168082.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_33, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  671528

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 839 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561886--565256	181	18.8	179	76	7	2393	40	8	9	41	1.69
565260--577264	181	66.4	179	71	10	4721	40	8	9	41	1.68
567279--567337	24	2.4	25	85	2	75	35	3	1	59	1.24
567277--567332	25	2.2	26	81	9	71	33	3	0	62	1.12
567415--567463	16	2.8	18	72	15	57	44	10	8	36	1.68
565260--585426	362	55.5	361	69	12	6700	40	8	9	41	1.68
570682--570721	18	2.4	17	87	8	55	45	2	7	45	1.45
574434--577264	180	15.7	180	76	5	1978	39	8	10	41	1.69
577263--585426	181	45.5	180	75	7	5103	40	8	9	41	1.69
583836--583872	17	2.4	16	86	13	51	35	5	2	56	1.36
577263--585420	541	15.2	536	75	8	4835	40	8	9	41	1.69
580658--585426	360	13.2	359	75	7	3205	39	8	9	41	1.69
585927--587082	180	6.4	181	73	8	550	42	9	8	39	1.68
586204--586249	21	2.2	22	77	18	53	28	10	10	50	1.71
585927--587075	357	3.2	357	76	7	867	42	9	8	39	1.67
587669--587702	17	2.0	17	100	0	68	52	5	11	29	1.61
587812--588149	182	1.9	185	82	8	442	43	9	7	39	1.66
587205--588230	552	1.9	549	79	8	1190	41	10	8	39	1.70
587182--589702	181	14.0	181	72	11	1046	41	9	8	40	1.67
587686--589702	533	3.8	533	76	9	1416	42	8	8	41	1.66
589005--589647	352	1.8	352	79	5	753	41	8	7	41	1.64
589394--590018	316	2.0	316	80	9	722	42	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590001--590038	18	2.2	18	86	13	53	42	5	7	44	1.56
590183--590215	18	1.9	17	88	11	50	36	12	9	42	1.74
589783--591496	181	9.6	177	75	7	1036	41	9	8	40	1.68
591015--591324	167	1.9	166	83	2	388	41	9	7	41	1.65
591828--595528	181	20.6	180	74	9	2401	42	10	7	40	1.67
592076--592397	178	1.8	177	84	3	441	43	10	6	39	1.65
592276--592571	163	1.8	162	82	3	380	39	11	8	40	1.70
592953--592996	18	2.5	18	82	14	56	40	11	4	43	1.61
591977--592998	520	2.0	517	78	8	1065	43	11	7	38	1.68
594869--594907	18	2.2	18	86	9	53	58	2	5	33	1.33
592500--595528	536	5.6	533	76	7	2346	42	10	7	40	1.67
595529--598171	182	14.7	182	76	7	2083	39	8	10	41	1.69
598119--598216	44	2.2	44	85	1	124	36	9	10	43	1.70
599288--602268	181	16.6	182	74	7	2119	40	9	8	41	1.68
599295--602269	542	5.5	540	75	8	2327	40	9	8	41	1.68
602515--602553	20	2.0	20	85	9	55	53	2	5	38	1.37
602450--604036	181	9.0	179	73	9	1012	41	10	8	39	1.70
604487--605155	358	1.9	360	80	5	789	42	9	7	40	1.65
604352--605179	181	4.6	179	73	8	583	42	9	7	40	1.66
605180--607812	181	14.6	179	74	7	1539	40	8	10	41	1.70
606394--606439	23	2.0	24	82	4	58	39	2	6	52	1.40
605180--607804	363	7.3	356	73	9	1148	40	8	10	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607776--607867	44	2.1	44	89	4	141	39	8	9	42	1.69
608774--611856	181	17.2	181	73	9	1905	41	9	8	40	1.67
612038--613606	181	8.8	178	73	8	960	41	10	8	39	1.70
612066--613369	710	1.8	706	79	7	1533	42	10	8	38	1.70
614826--615139	165	1.9	162	81	3	378	37	6	10	44	1.66
614993--615486	179	2.8	176	79	8	473	41	7	9	41	1.65
615732--618998	181	18.1	181	73	8	1988	41	9	8	41	1.67
615732--618998	358	9.1	359	73	9	1662	41	9	8	41	1.67
619179--620743	181	8.8	180	73	10	855	41	10	8	39	1.69
619207--620593	528	2.6	533	77	7	1371	41	9	8	39	1.69
621331--621386	18	3.1	19	80	15	73	41	12	5	41	1.66
621180--621909	181	4.1	181	76	7	623	41	9	7	42	1.64
621911--628192	181	35.1	181	75	8	4166	39	8	10	41	1.69
621911--628192	358	17.5	357	73	8	3747	39	8	10	41	1.69
621911--628192	714	8.8	712	73	10	3094	39	8	10	41	1.69
624920--624958	20	2.1	19	85	9	53	35	5	0	58	1.20
625704--626144	177	2.5	179	75	6	407	40	6	12	40	1.68
621911--628114	536	11.5	533	74	9	3709	39	8	10	41	1.69
628085--628298	106	2.0	106	82	3	261	33	10	7	48	1.66
628191--631715	362	9.6	360	70	11	1454	40	8	9	41	1.68
628191--629808	180	9.0	179	74	7	1123	40	8	9	41	1.68
629864--629910	17	2.6	19	80	12	55	44	4	10	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629837--631708	181	10.4	181	76	7	1443	39	8	9	42	1.68
629832--631708	537	3.5	538	77	5	1445	39	8	9	42	1.68
629921--631603	718	2.3	714	79	8	1748	39	8	9	42	1.68
631754--635468	180	20.7	180	76	6	2628	41	9	8	40	1.67
631840--634851	181	16.8	179	74	9	894	41	9	8	40	1.67
631754--635462	361	10.3	358	76	7	2596	41	9	8	40	1.67
635367--635560	93	2.1	92	94	3	345	37	10	6	45	1.64
635462--637706	181	12.5	178	71	13	838	40	9	7	42	1.66
636852--636922	34	2.1	35	94	2	126	38	14	5	42	1.69
636873--637532	180	3.8	171	78	10	530	40	9	6	43	1.64
637747--639471	181	9.6	181	76	5	1227	42	10	7	39	1.67
637747--639471	361	4.8	357	77	7	1384	42	10	7	39	1.67
640157--640189	14	2.4	14	90	5	50	45	42	3	9	1.51
640171--640400	7	35.4	7	70	13	136	45	36	0	18	1.50
640176--640402	20	12.1	19	71	17	102	44	36	0	19	1.51
640254--640362	33	3.4	32	83	5	121	44	37	0	18	1.50
640157--640383	13	17.4	13	72	14	121	44	35	0	18	1.54
640252--640383	57	2.3	58	80	8	162	43	38	0	17	1.49
640285--640400	25	4.6	26	78	13	100	43	40	0	16	1.48
640252--640400	57	2.6	57	78	9	160	44	38	0	16	1.48
640962--643979	358	8.5	355	74	8	1878	42	10	7	39	1.68
641321--643588	526	4.2	535	75	9	1301	42	10	7	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641321--643896	177	14.4	177	73	11	1353	42	9	7	40	1.67
642548--642852	168	1.8	168	84	6	420	42	11	5	39	1.65
642706--643979	180	7.1	181	74	7	862	41	10	8	39	1.68
644404--644452	18	2.8	17	78	12	55	46	8	10	34	1.67
643984--644758	355	2.2	357	81	4	889	40	7	10	41	1.68
644618--644925	145	2.1	146	83	6	392	41	8	9	40	1.68
644766--649744	180	27.7	179	75	8	3307	40	8	9	41	1.68
644768--649744	361	13.8	359	74	8	3024	40	8	9	41	1.68
644766--657964	181	73.5	181	70	11	4304	39	8	10	41	1.68
650359--650409	26	2.0	26	88	0	75	43	3	5	47	1.46
644817--652820	537	14.9	530	72	11	2383	40	8	9	41	1.68
653517--653596	41	2.0	40	95	2	142	41	10	10	38	1.72
657566--657964	182	2.2	182	79	8	413	37	8	11	42	1.71
658282--659236	180	5.4	178	79	7	872	40	8	10	40	1.70
658282--659166	356	2.5	353	79	7	934	40	8	9	40	1.69
658895--659495	327	1.8	326	84	3	816	39	8	8	42	1.66
659221--659784	289	2.0	287	83	2	729	40	8	7	43	1.64
659546--662927	180	18.7	178	72	11	948	40	8	9	42	1.67
661703--661743	18	2.3	18	91	0	64	43	2	0	53	1.13
659507--662924	360	9.5	355	73	10	1559	40	8	9	42	1.67
661466--662843	719	1.9	718	81	4	1650	39	8	8	43	1.66
662967--666359	181	19.1	178	74	8	2058	42	9	7	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662969--666158	540	6.0	535	74	10	1608	42	9	7	40	1.65
663413--664736	722	1.8	722	80	4	1616	42	9	8	39	1.67
662967--670151	721	10.0	715	69	13	2514	42	9	7	40	1.66
666415--666731	165	1.9	165	80	5	372	40	7	7	43	1.63
666563--668386	181	10.2	179	78	8	1479	41	9	8	41	1.66
666566--668230	902	1.8	900	80	6	2008	41	8	8	41	1.66
666566--668386	358	5.1	361	78	7	1715	41	9	8	41	1.66
668428--670151	180	9.6	177	76	7	1244	42	9	8	39	1.68
668428--669990	538	2.9	532	77	6	1425	42	9	8	39	1.68

Tables:   1   2   3   4   5   6   7

The End!