genome.fa.s257.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168082.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_33, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  671528

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 839 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345651--345753	45	2.3	44	81	6	118	18	36	27	17	1.93
351624--359767	181	45.2	178	72	11	3241	40	8	9	41	1.68
353417--359767	181	35.5	181	74	9	3382	40	8	9	41	1.67
353425--359754	357	17.7	357	74	9	3498	40	8	9	41	1.67
355273--355305	18	1.9	17	88	11	50	48	6	6	39	1.53
353470--359767	539	11.7	539	75	9	3835	40	8	9	41	1.67
355842--359495	182	20.4	180	74	10	973	40	8	9	42	1.67
359817--360244	181	2.4	181	81	4	454	40	8	8	42	1.65
360115--360397	155	1.8	155	83	3	381	42	8	7	41	1.63
360247--361475	362	3.4	358	78	6	1044	42	9	7	39	1.66
360247--361444	540	2.2	538	79	4	1272	43	9	7	39	1.65
360247--361467	181	6.8	179	75	7	924	43	9	7	39	1.66
360693--361502	359	2.3	357	79	5	848	42	10	7	39	1.66
361459--361559	50	2.0	50	98	0	193	44	16	3	34	1.67
362863--366371	180	19.6	180	76	6	2406	40	7	9	42	1.66
362863--366371	361	9.8	357	75	8	2355	40	7	9	42	1.66
362863--366335	721	4.8	712	75	9	2410	40	7	9	42	1.66
366375--368096	180	9.6	181	70	11	466	41	9	8	40	1.67
367369--367419	18	2.8	19	80	17	72	41	11	3	43	1.60
366888--368381	357	4.2	356	76	8	1195	40	9	8	40	1.69
366887--368381	180	8.4	180	75	6	1128	40	9	8	40	1.69
367020--368340	718	1.8	714	80	5	1565	40	10	8	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368417--376626	181	45.9	181	72	10	3882	41	10	8	39	1.68
370075--370401	180	1.8	178	82	4	413	44	11	7	37	1.68
372550--372596	18	2.7	18	74	12	53	40	12	4	42	1.63
373380--373427	23	2.1	22	84	3	60	43	2	2	52	1.24
373685--373729	19	2.4	19	100	0	90	31	8	11	48	1.69
374185--375951	538	3.3	527	78	7	1301	41	10	8	39	1.69
376144--376608	177	2.6	176	80	7	474	40	10	8	40	1.68
378645--378730	29	3.0	29	88	6	129	31	5	30	32	1.81
379373--379473	6	16.5	6	73	13	55	71	0	5	21	1.13
379372--379489	12	9.7	11	72	18	67	71	2	5	21	1.18
379372--379479	25	4.5	23	77	15	85	70	1	5	22	1.18
379406--379509	53	1.9	56	80	9	126	74	2	7	15	1.17
380550--380709	51	3.1	51	88	0	221	40	13	9	36	1.76
381396--381501	51	2.1	51	83	3	133	31	16	21	30	1.96
381326--381560	120	2.0	120	87	1	346	31	17	20	31	1.95
382757--382831	15	5.1	14	68	7	51	2	13	4	80	0.97
382766--382831	29	2.3	29	81	5	80	3	13	4	78	1.02
383147--383185	7	5.4	7	87	6	51	0	10	0	89	0.48
383146--383187	11	3.8	11	96	0	75	0	11	0	88	0.53
383151--383197	22	2.1	22	84	7	60	4	10	0	85	0.74
387060--387168	13	8.9	11	72	23	60	70	0	6	22	1.15
387097--387158	25	2.5	26	84	10	85	72	1	8	17	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387085--387168	5	15.4	5	79	13	71	72	1	5	20	1.12
388233--388392	51	3.2	51	83	0	205	39	16	9	35	1.81
388440--389106	182	3.8	178	79	6	683	41	9	8	39	1.69
389155--391722	180	14.4	176	74	9	1511	41	10	7	39	1.69
390737--395505	181	26.1	180	72	10	1761	41	9	8	40	1.68
390724--391726	182	5.6	180	76	7	798	41	10	8	39	1.69
391798--395444	181	20.2	180	75	8	2304	41	9	8	40	1.68
395542--397765	181	12.5	180	74	8	1385	41	9	8	39	1.69
395503--398318	536	5.2	529	75	9	1788	41	9	8	40	1.68
395511--398318	180	15.6	179	72	9	1477	41	9	8	40	1.68
397038--397354	175	1.8	175	79	2	377	39	10	6	43	1.65
398435--399239	181	4.5	180	76	7	695	42	10	7	39	1.69
399316--399370	16	3.5	16	97	2	103	50	5	0	43	1.25
399726--400356	182	3.5	181	77	4	513	41	7	9	40	1.67
407944--411471	181	19.8	174	72	12	568	40	8	9	41	1.68
407974--408630	346	1.9	337	82	4	798	41	8	9	41	1.67
408312--413014	181	25.8	181	72	10	2542	40	8	9	41	1.68
411065--411107	20	2.2	20	83	4	52	37	2	0	60	1.10
411855--412809	180	5.2	183	75	9	592	39	7	9	43	1.66
412116--412911	180	4.4	180	77	7	533	39	8	10	42	1.69
412314--412967	359	1.8	360	79	5	777	39	7	10	42	1.69
412956--412996	17	2.6	16	85	11	57	39	2	7	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413016--415894	180	16.1	180	75	8	2045	40	8	10	41	1.69
414751--414792	18	2.4	18	84	15	61	45	2	9	42	1.49
413016--415894	538	5.4	532	77	7	2255	40	8	10	41	1.69
436365--436466	45	2.3	45	84	6	127	23	28	20	27	1.99
437759--437794	18	2.0	18	94	0	63	33	8	22	36	1.84
444000--444024	13	1.9	13	100	0	50	24	16	28	32	1.96
446070--447192	503	2.2	503	79	5	1133	31	19	24	23	1.98
453070--453103	9	3.8	9	84	0	50	2	11	0	85	0.71
453071--453104	18	1.9	17	94	5	59	2	14	0	82	0.79
453608--453666	7	8.6	7	74	10	59	15	1	38	44	1.56
455791--455884	38	2.4	38	94	1	161	30	12	11	44	1.78
461163--461200	7	5.6	7	84	3	51	26	2	2	68	1.16
461648--461693	15	3.2	14	85	11	58	19	0	2	78	0.86
461666--461692	5	5.4	5	100	0	54	18	0	0	81	0.69
461770--461827	3	19.7	3	92	3	100	65	0	1	32	1.03
461826--461869	3	14.7	3	90	0	70	68	27	0	4	1.09
461820--461872	12	4.4	12	92	0	88	67	22	0	9	1.19
464131--464170	6	6.7	6	88	0	53	40	20	20	20	1.92
465140--465169	2	15.0	2	100	0	60	50	0	0	50	1.00
465722--465746	3	8.3	3	100	0	50	36	0	0	64	0.94
468650--468741	44	2.1	44	83	0	112	35	13	13	38	1.83
472644--472714	34	2.1	34	81	5	81	39	12	15	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472789--472862	34	2.2	34	87	0	103	33	12	13	40	1.82
474301--474625	161	2.0	161	83	3	413	44	16	7	31	1.75
475445--475484	21	1.9	21	85	10	55	37	7	5	50	1.53
477026--477091	15	4.3	15	75	3	60	18	4	30	46	1.68
477011--477217	23	8.9	23	68	11	80	19	2	29	47	1.64
477034--477195	16	10.4	16	70	11	68	18	2	31	47	1.62
477026--477091	31	2.2	30	83	2	78	18	4	30	46	1.68
477145--477232	16	5.6	16	72	9	56	23	2	23	50	1.61
477126--477240	15	7.4	15	69	9	61	20	1	28	48	1.60
479504--479533	10	3.1	10	90	9	53	50	0	0	50	1.00
480557--480801	125	2.0	125	82	4	307	42	9	6	41	1.64
481245--481287	2	21.5	2	95	0	77	0	46	0	53	1.00
481414--481477	22	2.8	22	77	13	67	40	12	1	45	1.51
481394--481481	22	4.0	23	69	15	60	39	12	3	44	1.59
481494--481606	22	5.3	22	70	15	76	32	10	5	51	1.59
486960--486996	19	1.9	19	88	0	56	29	2	24	43	1.68
495010--495072	23	2.6	24	79	18	76	17	6	3	73	1.18
499143--499310	1	168.0	1	72	0	120	85	8	1	3	0.78
499144--499310	11	14.9	11	79	10	151	85	8	1	3	0.78
499144--499310	16	10.7	15	80	12	169	85	8	1	3	0.78
499143--499310	21	7.8	21	77	18	150	85	8	1	3	0.78
500403--500483	34	2.4	34	80	12	85	34	18	11	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500399--500565	82	2.0	82	83	4	212	32	16	11	38	1.85
500556--500593	18	2.2	18	85	4	51	28	13	15	42	1.85
500590--500635	17	2.7	17	80	12	51	32	13	13	41	1.82
500779--501305	114	4.6	114	75	5	381	21	26	15	36	1.93
501686--501817	50	2.6	50	77	8	135	38	9	17	34	1.81
502249--502311	23	2.6	24	80	16	76	17	4	3	74	1.12
502248--502311	20	3.3	18	76	20	51	17	4	3	75	1.11
503370--503442	27	2.7	26	77	12	67	45	2	2	49	1.31
503510--504085	288	2.0	288	99	0	1143	42	9	10	37	1.71
504822--504931	55	2.0	55	82	5	132	45	4	2	47	1.37

Tables:   1   2   3   4   5   6   7