Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold6
Parameters: 2 7 7 80 10 50 1000
Length:  4312818

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1587 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4256688--4256801
28
3.9
28
80
14
117
36
1
1
59
1.18
4256725--4256810
41
2.2
38
81
6
100
34
0
2
62
1.08
4256663--4256801
10
14.5
10
70
16
89
36
2
1
59
1.18
4256784--4256822
20
2.0
20
85
10
53
28
0
2
69
1.02
4256663--4256801
19
7.2
20
72
12
89
36
2
1
59
1.18
4256787--4256825
17
2.3
16
86
8
51
25
0
2
71
0.98
4257637--4257670
17
1.9
18
88
5
52
29
38
0
32
1.58
4257620--4257747
57
2.3
56
84
6
163
23
31
1
43
1.63
4258097--4258134
19
2.0
19
94
0
67
26
13
34
26
1.93
4266363--4266425
1
63.0
1
93
0
99
95
4
0
0
0.28
4278695--4278738
19
2.2
20
84
11
56
45
4
13
36
1.64
4281756--4281793
9
4.3
9
80
6
51
44
0
7
47
1.32
4281762--4281800
17
2.3
17
95
0
69
43
0
5
51
1.24
4282903--4282951
20
2.5
20
89
0
71
53
0
24
22
1.47
4288592--4288674
6
13.5
6
71
18
64
78
7
1
13
1.01
4288592--4288674
19
4.5
18
72
18
64
78
7
1
13
1.01
4288685--4288867
3
62.0
3
69
16
64
62
5
4
27
1.38
4288781--4288895
16
7.3
16
73
14
53
68
2
1
26
1.12
4288809--4288908
4
25.5
4
73
18
61
71
2
1
26
1.04
4288784--4288903
27
4.5
25
71
21
86
70
2
1
25
1.10
4288820--4288908
16
5.3
16
73
17
74
71
2
1
24
1.04
4288834--4288907
24
2.8
27
71
25
77
71
1
1
25
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4309270--4309361
46
2.0
46
100
0
184
36
19
21
21
1.95
4309362--4309629
43
6.2
42
79
9
213
30
20
21
27
1.98
4309362--4309548
42
4.4
43
82
9
204
32
19
22
25
1.98
4309362--4309629
86
3.1
85
80
7
249
30
20
21
27
1.98
4310047--4310112
21
3.1
21
86
4
89
3
43
19
33
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!