genome.fa.s2294.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold6
Parameters: 2 7 7 80 10 50 1000
Length:  4312818

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346989--347014	10	2.6	10	100	0	52	19	0	23	57	1.40
349331--349407	35	2.2	36	90	4	129	27	3	16	51	1.62
350707--350745	14	2.8	14	84	0	51	43	10	7	38	1.67
357691--357966	27	10.3	26	82	6	254	44	19	18	17	1.87
357691--357977	81	3.6	79	81	6	294	43	19	18	18	1.89
358319--358402	28	3.0	28	83	0	123	21	23	25	29	1.99
358372--358442	33	2.2	33	84	5	90	23	25	22	28	2.00
360503--360536	11	3.1	11	91	0	50	17	20	20	41	1.91
371506--371567	31	2.0	31	93	0	106	37	11	8	43	1.70
376558--376721	39	4.2	39	85	1	195	42	21	6	28	1.78
376583--376734	39	3.9	39	85	0	205	40	22	7	28	1.82
381410--381461	22	2.3	22	81	12	61	48	3	3	44	1.39
381893--381943	24	2.1	24	96	0	93	45	5	19	29	1.74
389934--390066	51	2.6	51	84	1	169	30	24	18	25	1.98
399440--399496	29	2.1	26	90	9	87	26	10	14	49	1.75
404817--404949	50	2.7	50	81	4	169	21	27	23	27	1.99
412027--412065	4	9.8	4	82	0	51	23	23	2	51	1.61
412026--412064	20	2.0	20	94	0	69	20	23	2	53	1.57
412330--412556	50	4.4	51	84	5	271	23	29	20	26	1.99
413814--413980	82	2.0	82	93	2	282	28	8	23	38	1.85
415008--415052	22	2.0	22	87	8	65	53	17	0	28	1.44
424258--424313	26	2.2	26	86	0	76	44	10	10	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437868--438151	138	2.1	138	96	0	523	43	5	9	41	1.61
437989--438376	213	1.8	213	96	1	715	40	7	9	42	1.66
438382--438562	75	2.4	75	89	0	281	29	14	9	46	1.76
441623--441701	21	3.6	21	65	15	52	46	13	16	22	1.82
441591--441713	45	2.7	45	92	2	194	46	14	17	21	1.84
441591--441734	45	3.2	43	83	11	166	47	13	17	22	1.82
445628--445904	140	2.0	140	89	2	432	41	7	6	44	1.59
451950--452252	150	2.0	150	97	0	570	34	19	19	26	1.96
452388--452557	76	2.2	76	86	2	234	45	7	12	34	1.70
452575--452997	138	3.1	138	92	1	695	39	8	5	46	1.58
464021--464073	19	3.0	17	78	10	61	35	9	18	35	1.84
464045--464089	23	2.0	23	91	4	74	37	4	17	40	1.70
464055--464099	23	2.0	23	86	4	65	33	4	15	46	1.66
471744--472286	44	12.6	44	69	13	249	29	20	22	27	1.98
471907--472280	173	2.2	173	91	2	610	29	19	21	29	1.98
471744--472238	217	2.3	217	82	7	562	29	20	22	28	1.98
472013--472283	84	3.2	84	66	13	219	29	18	22	29	1.98
472885--472927	19	2.3	19	100	0	86	37	9	16	37	1.81
483945--484001	28	2.0	28	96	0	105	43	14	10	31	1.79
492252--492285	16	2.1	16	88	0	50	26	29	14	29	1.95
495735--495792	12	4.6	12	80	18	64	24	10	6	58	1.55
495734--495792	13	4.5	13	79	14	68	23	10	6	59	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495736--495794	27	2.3	27	82	8	79	25	11	6	55	1.60
503013--503081	27	2.5	28	86	4	97	20	18	17	43	1.88
510256--510317	24	2.6	24	86	0	88	46	14	9	29	1.76
512406--512435	12	2.5	12	94	0	51	53	0	10	36	1.35
512743--512783	16	2.7	15	85	7	55	82	2	0	14	0.76
512743--512785	7	5.7	7	81	13	50	81	2	0	16	0.79
526607--526879	87	3.1	88	73	9	279	31	19	20	28	1.97
526663--526911	46	5.6	46	69	12	135	33	17	21	27	1.95
526497--526892	175	2.3	175	91	1	650	32	18	20	28	1.96
526954--527051	44	2.2	44	88	0	142	29	20	24	25	1.99
527029--527269	44	5.5	44	68	13	129	34	16	20	28	1.94
526974--527319	175	2.0	175	92	0	575	32	18	20	28	1.96
527026--527309	85	3.3	85	75	10	313	33	17	21	28	1.96
527337--527459	44	2.8	44	83	2	140	30	20	20	29	1.97
527878--527920	9	4.6	9	77	11	50	0	2	16	81	0.79
527884--527928	20	2.2	21	92	4	74	2	2	11	84	0.80
527880--527929	25	2.0	25	88	7	75	2	2	12	84	0.80
542889--542973	28	3.0	28	94	0	143	41	14	9	35	1.78
543003--543058	29	1.9	29	96	0	103	21	7	30	41	1.80
544391--544511	22	5.5	23	68	15	94	42	14	11	31	1.81
544389--544524	44	3.1	44	96	0	254	43	13	11	31	1.80
545817--545856	21	1.9	21	84	0	53	52	2	7	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546938--547021	37	2.3	37	83	4	98	27	14	21	36	1.92
548164--548404	30	7.9	30	87	3	295	42	15	7	34	1.76
560072--560115	21	2.0	22	82	4	54	29	2	4	63	1.26
560089--560192	19	5.2	18	70	23	57	36	0	4	58	1.19
560085--560191	43	2.6	43	81	10	109	37	0	4	57	1.19
560089--560203	20	5.7	19	76	16	99	34	0	6	59	1.22
575918--575974	24	2.4	25	85	11	84	28	3	10	57	1.48
577201--577376	75	2.4	75	86	4	232	25	4	12	57	1.53
580774--580940	41	4.1	41	100	0	334	26	9	10	53	1.65
585007--585064	28	2.1	28	86	0	80	27	18	29	24	1.98
587552--587636	26	3.3	26	88	6	120	47	15	14	23	1.82
596737--596839	20	5.2	20	63	6	57	14	31	18	35	1.91
596721--597043	40	8.1	40	83	2	371	17	27	17	37	1.92
596721--597041	120	2.7	120	86	2	439	17	28	16	37	1.92
596878--596949	20	3.6	20	72	7	65	16	26	16	40	1.90
599519--599606	28	3.2	28	90	4	135	26	5	35	32	1.80
603711--603808	20	4.9	20	69	9	65	13	30	18	37	1.89
605697--605757	26	2.3	26	80	0	68	21	22	21	34	1.97
612884--612928	20	2.3	19	85	14	65	73	0	0	26	0.84
612890--612939	21	2.4	20	78	18	57	68	2	2	28	1.12
626275--626356	36	2.2	36	93	2	137	35	17	21	25	1.95
636111--636182	35	2.1	35	89	5	110	30	15	22	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640269--640298	15	1.9	16	93	6	53	40	0	0	60	0.97
644505--644546	21	2.0	21	81	9	50	50	7	4	38	1.51
645142--645169	1	28.0	1	100	0	56	0	0	0	100	0.00
645668--645732	29	2.2	29	86	0	85	47	12	3	36	1.57
646862--646910	14	3.5	13	86	13	62	51	0	2	46	1.12
646862--646915	29	2.0	26	82	10	63	55	0	1	42	1.10
653773--653877	28	3.8	28	85	0	147	26	22	23	26	2.00
654140--654690	27	20.2	27	84	8	654	17	19	20	42	1.89
654154--654219	34	1.9	34	93	6	116	16	16	27	39	1.90
657265--657296	16	2.0	16	93	0	55	25	12	21	40	1.88
657470--657672	61	3.3	61	85	0	253	32	14	24	28	1.95
666443--666498	24	2.2	26	82	14	73	69	1	23	5	1.18
669629--669676	14	3.1	16	79	14	64	64	0	2	33	1.05
690116--690294	94	1.9	94	89	0	277	34	11	23	31	1.90
690373--690577	61	3.4	61	86	0	239	34	17	22	25	1.95
694207--694328	51	2.4	50	83	5	138	22	18	28	30	1.97
699015--699351	50	6.6	50	84	4	347	27	20	29	23	1.99
700514--700669	83	1.9	83	100	0	312	34	14	15	35	1.88
705406--705620	45	4.8	45	91	1	324	25	19	18	36	1.94
706899--706931	16	2.1	16	100	0	66	18	39	30	12	1.87
720173--720263	24	3.8	24	73	0	83	28	23	21	26	1.99
720171--720263	48	1.9	48	86	0	132	29	23	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720280--720375	24	4.0	24	82	10	115	31	22	18	27	1.97
720173--720373	110	1.8	110	81	2	251	30	22	20	25	1.99
720736--720787	24	2.2	24	85	0	68	55	9	3	30	1.50
747905--747948	22	2.0	21	83	12	54	40	0	0	59	0.98
748081--748300	110	2.0	111	90	2	354	28	18	17	35	1.94
768174--768251	20	4.0	19	81	5	86	46	12	8	32	1.73
768173--768248	40	1.9	39	86	7	109	44	13	9	32	1.75
768175--768259	39	2.2	40	82	6	102	48	10	9	31	1.70
780162--780324	42	3.9	42	80	1	166	30	18	21	29	1.97
780162--780324	84	1.9	84	86	2	229	30	18	21	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14