genome.fa.s2294.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold6
Parameters: 2 7 7 80 10 50 1000
Length:  4312818

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
782201--782242	20	2.1	20	95	0	75	21	23	4	50	1.68
783119--783320	45	4.5	45	89	0	305	27	18	17	36	1.94
790527--790552	12	2.2	12	100	0	52	0	7	0	92	0.39
803816--803855	18	2.2	18	86	8	55	50	15	10	25	1.74
804970--805045	15	5.1	15	72	23	61	14	22	1	61	1.40
804950--805056	45	2.4	44	79	6	133	13	23	0	62	1.36
815037--815144	53	2.0	53	87	3	155	37	13	24	25	1.92
816323--816355	15	2.2	15	94	0	57	57	6	9	27	1.53
822186--822239	26	2.1	26	96	0	99	25	25	18	29	1.98
828791--828831	12	3.4	12	89	0	64	36	7	14	41	1.74
833960--834042	41	2.0	42	97	2	159	27	12	26	33	1.92
845240--845499	42	6.2	41	76	10	231	36	25	15	22	1.94
845234--845503	84	3.2	85	93	1	454	35	24	16	23	1.95
849243--849425	29	6.6	29	75	16	131	39	20	16	22	1.92
849302--849434	58	2.3	58	83	10	166	40	20	15	24	1.90
854784--854905	48	2.5	49	81	7	126	38	21	21	18	1.93
859217--859251	7	5.1	7	93	6	54	34	0	8	57	1.29
863863--863920	24	2.4	24	88	0	89	27	24	18	29	1.98
865502--865557	28	2.0	28	89	0	85	42	17	12	26	1.85
866705--866752	23	2.1	23	88	7	71	37	18	10	33	1.85
870400--870547	73	2.0	73	98	0	287	37	13	16	32	1.88
874981--875059	29	2.7	29	84	0	95	37	21	16	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
875009--875114	29	3.7	30	77	9	105	40	20	16	22	1.91
876674--876713	19	2.1	19	100	0	80	37	15	15	32	1.88
881565--881630	32	2.1	32	97	0	123	43	10	22	22	1.84
885018--885058	17	2.6	15	88	7	55	80	4	9	4	1.00
885571--885611	19	2.2	18	86	4	55	4	21	53	19	1.63
890768--891034	137	1.9	138	81	5	317	29	27	21	21	1.98
894091--894261	20	8.6	20	68	10	109	16	30	16	35	1.92
894091--894309	40	5.5	40	83	0	251	18	30	15	35	1.92
898463--898509	26	1.9	23	87	12	67	55	10	2	31	1.46
898628--898664	17	2.1	18	85	14	51	35	2	5	56	1.36
899413--899443	16	1.9	16	100	0	62	25	19	19	35	1.95
919646--919798	53	2.9	53	84	3	209	32	13	25	28	1.94
922328--922501	27	6.4	26	76	5	123	29	20	14	35	1.92
934262--934496	50	4.6	51	80	8	230	23	27	21	27	1.99
934262--934516	106	2.5	103	79	6	268	23	27	20	27	1.99
934830--934886	30	1.9	30	85	0	78	31	22	5	40	1.76
941441--941568	49	2.6	50	81	6	154	23	27	18	30	1.98
944843--944885	13	3.3	13	80	0	50	46	20	0	32	1.51
944850--944916	13	5.2	13	75	0	62	38	20	0	40	1.53
945280--945321	18	2.4	17	84	11	57	21	0	2	76	0.90
951377--951515	40	3.5	40	84	0	188	18	23	21	35	1.95
951414--951515	20	5.1	20	69	0	87	17	23	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955208--955297	43	2.1	43	87	2	128	38	14	17	28	1.89
955407--955494	36	2.5	36	84	1	115	38	15	21	23	1.92
960769--960810	21	2.0	20	86	13	59	19	9	50	21	1.75
961340--961373	16	2.2	15	89	5	50	55	0	0	44	0.99
966703--966855	42	3.7	41	77	10	161	29	26	20	23	1.99
966703--966855	41	3.7	42	82	4	186	29	26	20	23	1.99
969746--970521	385	2.0	385	99	0	1527	33	24	12	30	1.92
972642--972673	16	2.0	16	93	0	55	71	0	6	21	1.07
978599--979067	100	4.7	98	86	3	553	24	18	22	33	1.97
978575--979084	150	3.4	148	80	3	531	25	19	23	31	1.98
978626--979084	200	2.3	200	88	0	650	25	18	23	32	1.97
978682--979084	100	4.0	100	91	1	621	25	19	23	31	1.98
978575--979069	50	9.9	50	76	3	449	25	18	23	32	1.97
979460--979723	123	2.1	125	90	3	406	26	24	19	28	1.99
981813--981865	6	8.7	6	82	12	54	5	9	1	83	0.89
981813--981880	12	5.3	13	75	10	68	7	7	1	83	0.86
990307--990364	31	1.9	30	92	3	98	32	12	10	44	1.75
990309--990365	15	3.7	15	76	4	69	33	10	10	45	1.73
991500--991568	28	2.5	28	85	0	84	40	15	20	23	1.91
993989--994041	25	2.1	25	96	0	97	45	9	9	35	1.69
1000763--1000826	22	2.8	22	81	6	74	57	0	1	40	1.08
1002855--1002888	14	2.3	14	90	10	50	41	0	2	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1005589--1005640	20	2.6	20	87	0	77	40	21	28	9	1.84
1008920--1008955	18	2.0	18	100	0	72	33	0	33	33	1.58
1014620--1014653	7	4.9	7	92	0	59	44	26	14	14	1.84
1031701--1031780	28	2.9	28	90	0	124	32	21	22	23	1.98
1058514--1058662	41	3.6	41	80	3	156	31	25	23	19	1.98
1066198--1066230	14	2.2	16	89	10	52	69	0	6	24	1.10
1072761--1072822	10	5.8	10	74	20	54	72	8	3	16	1.21
1072751--1072822	34	2.2	32	87	5	99	72	6	2	18	1.20
1072834--1072867	17	2.0	17	88	0	50	76	0	20	2	0.92
1074071--1074189	44	2.7	44	84	2	159	31	21	19	26	1.97
1074326--1074911	132	4.4	132	91	1	915	29	20	24	25	1.99
1075006--1075048	21	2.1	21	86	4	61	41	11	27	18	1.85
1075196--1075316	44	2.8	44	81	5	120	31	18	20	29	1.96
1076196--1076230	12	2.8	12	86	4	52	60	0	2	37	1.12
1081768--1081956	41	4.6	40	79	3	146	35	24	20	19	1.96
1081802--1081957	82	1.9	82	81	2	188	33	27	20	17	1.96
1081801--1081957	41	3.8	40	83	3	170	34	27	20	17	1.95
1082629--1082801	86	2.0	87	98	1	339	42	17	10	30	1.82
1085537--1085578	18	2.3	18	88	12	59	19	38	28	14	1.90
1091758--1091790	17	1.9	17	93	0	57	18	12	33	36	1.88
1093010--1093149	68	2.1	68	91	0	226	27	15	23	34	1.94
1099608--1099666	28	2.1	28	90	0	91	38	20	22	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100070--1100121	27	1.9	27	84	7	70	28	21	17	32	1.96
1100105--1100264	27	5.9	27	74	4	99	33	10	18	37	1.84
1100105--1100265	54	3.0	54	77	4	171	33	9	18	37	1.84
1102714--1102752	17	2.3	17	90	0	60	20	17	33	28	1.96
1112682--1112722	13	2.9	14	79	20	50	36	9	12	41	1.76
1112682--1112717	13	2.6	15	79	20	51	30	11	11	47	1.74
1123037--1123084	16	2.9	17	78	15	55	41	2	2	54	1.24
1123044--1123088	22	2.0	22	87	8	65	40	2	0	57	1.11
1131182--1131324	41	3.5	41	98	0	268	29	21	19	29	1.98
1133840--1133884	24	1.9	23	86	4	63	46	15	6	31	1.72
1141920--1142002	40	2.1	39	91	6	132	26	26	22	24	2.00
1142172--1143093	53	17.4	53	99	0	1772	46	20	11	20	1.82
1142202--1143121	27	34.7	27	78	3	389	46	21	11	20	1.82
1143607--1143708	34	3.0	34	65	11	91	21	20	27	30	1.98
1143791--1143855	34	1.9	34	84	6	87	27	21	23	27	1.99
1146734--1146780	23	2.0	23	87	0	67	40	27	2	29	1.68
1146736--1146790	23	2.4	23	81	0	65	43	25	1	29	1.65
1157478--1157510	15	2.3	15	89	5	50	30	30	9	30	1.88
1162262--1162419	43	3.8	40	75	9	131	26	26	18	28	1.98
1162262--1162419	84	1.9	83	81	3	192	26	26	18	28	1.98
1162540--1162629	34	2.6	34	89	6	146	45	16	6	31	1.73
1170315--1170361	19	2.5	19	96	0	85	27	17	6	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1170732--1170761	15	2.0	15	93	0	51	46	3	0	50	1.18
1175720--1175749	9	3.3	9	90	0	51	86	0	13	0	0.57
1182239--1182275	7	5.4	7	81	18	51	67	0	16	16	1.23
1182232--1182275	14	3.1	14	87	9	54	68	0	15	15	1.22
1182232--1182291	16	3.4	16	77	22	59	66	0	16	16	1.25
1185914--1186538	129	4.9	129	92	0	1020	30	19	24	24	1.98
1185920--1186538	257	2.4	257	93	0	1051	31	18	25	24	1.98
1186553--1186969	44	9.6	43	71	9	186	26	19	26	28	1.99
1186723--1187421	129	5.5	126	73	12	450	28	18	23	28	1.98
1186531--1186969	218	2.0	218	91	1	711	26	19	26	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14