genome.fa.s2294.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold6
Parameters: 2 7 7 80 10 50 1000
Length:  4312818

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1549478--1549511	13	2.5	13	90	4	50	32	0	0	67	0.91
1556493--1556709	107	2.0	109	96	3	404	51	2	8	37	1.46
1568277--1568313	19	2.0	19	89	5	58	64	10	0	24	1.25
1568539--1568595	29	2.0	29	89	0	87	35	0	26	38	1.57
1568622--1568665	15	2.8	15	83	16	54	31	0	6	61	1.22
1575637--1575669	17	1.9	17	93	0	57	81	0	18	0	0.68
1576049--1576104	22	2.6	22	80	8	62	37	42	0	19	1.52
1577542--1577748	114	1.8	113	81	5	256	35	12	21	30	1.90
1577766--1577799	3	11.3	3	100	0	68	67	0	0	32	0.91
1578220--1578278	28	2.1	29	87	3	84	37	1	28	32	1.67
1578316--1578350	18	1.9	18	94	0	61	28	2	5	62	1.32
1578333--1578361	14	2.1	14	93	6	51	27	0	6	65	1.18
1579919--1579949	16	1.9	16	93	0	53	3	0	16	80	0.83
1584122--1584160	17	2.5	15	76	15	51	53	2	0	43	1.14
1594003--1594389	108	3.6	108	86	1	526	39	17	17	25	1.92
1593954--1594394	27	16.3	27	84	2	474	39	18	17	24	1.92
1594591--1594685	26	3.7	26	78	2	111	16	17	24	41	1.90
1594795--1594940	30	4.9	30	87	1	204	19	26	23	30	1.98
1600754--1600818	24	2.5	26	82	14	80	53	3	0	43	1.16
1600947--1602530	177	8.9	177	85	4	1988	37	12	13	35	1.83
1600947--1602530	364	4.4	358	85	4	2058	37	12	13	35	1.83
1602529--1602715	97	1.9	100	91	4	308	32	13	18	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1603969--1604002	17	1.9	18	88	5	52	11	5	8	73	1.24
1603963--1604010	17	2.7	17	80	6	51	16	4	6	72	1.20
1604205--1604256	18	2.8	19	69	16	54	26	3	7	61	1.41
1604721--1604760	21	1.9	21	94	0	71	20	12	12	55	1.69
1605125--1605160	19	1.9	19	88	5	56	38	2	5	52	1.39
1605125--1605173	19	2.7	18	84	9	55	40	2	4	53	1.32
1605130--1605173	19	2.2	21	84	11	58	38	2	4	54	1.33
1606202--1606237	2	18.0	2	94	0	63	47	0	2	50	1.15
1611400--1611554	26	6.0	26	82	5	163	19	10	22	47	1.80
1611407--1611546	51	2.7	52	83	2	176	19	11	22	47	1.81
1624063--1624495	132	3.3	132	92	0	706	31	20	22	25	1.98
1625957--1626007	18	2.8	18	80	11	50	25	5	3	64	1.33
1625928--1625985	28	2.1	27	81	12	64	32	3	5	58	1.37
1626014--1626077	26	2.4	29	77	15	75	35	1	3	59	1.23
1629143--1629212	34	2.1	34	97	0	131	18	35	2	42	1.65
1629977--1630017	21	1.9	22	85	14	59	36	4	9	48	1.58
1631698--1631727	14	2.1	14	100	0	60	23	6	30	40	1.80
1632338--1632376	18	2.2	17	86	13	53	33	0	20	46	1.51
1639654--1639818	25	6.6	25	86	3	181	31	22	23	23	1.98
1640573--1640598	12	2.2	12	100	0	52	15	0	65	19	1.27
1660508--1660539	16	2.0	16	93	0	55	25	15	0	59	1.36
1660767--1660906	51	2.7	52	77	8	160	30	26	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1673704--1673928	51	4.4	51	75	6	190	31	24	16	27	1.97
1686449--1686683	40	5.9	40	86	1	292	44	25	15	14	1.85
1687336--1687373	19	2.1	18	85	14	51	57	10	0	31	1.32
1687968--1688306	172	2.0	169	85	6	454	38	18	10	33	1.84
1689970--1690034	28	2.3	28	97	0	121	32	23	21	23	1.98
1690430--1690730	27	11.1	27	82	6	333	18	21	17	42	1.90
1691951--1692077	50	2.5	51	85	3	159	25	14	27	33	1.94
1701488--1701632	72	2.0	72	100	0	290	51	8	4	35	1.51
1712643--1712956	27	11.3	27	81	7	351	17	20	19	42	1.89
1712664--1712739	36	2.1	36	82	4	91	15	21	18	44	1.86
1715272--1715433	30	5.4	30	77	10	109	38	11	27	21	1.88
1715272--1715441	90	1.9	90	84	4	227	37	11	28	22	1.89
1723059--1723115	21	2.7	21	83	0	69	12	14	31	42	1.82
1729178--1730075	447	2.0	447	96	0	1643	31	14	22	31	1.94
1733134--1733318	75	2.5	76	75	3	178	27	25	20	27	1.99
1737799--1737920	40	3.0	40	78	7	140	40	18	25	15	1.90
1739944--1739973	15	2.0	15	93	0	51	56	3	40	0	1.16
1748878--1748953	23	3.1	23	68	27	66	38	30	7	23	1.83
1752146--1752377	42	5.5	41	72	12	175	34	24	15	25	1.94
1752138--1752377	85	2.8	84	84	3	293	34	24	16	25	1.96
1759521--1759709	42	4.5	43	74	9	147	34	26	14	23	1.94
1759472--1759709	84	2.8	85	83	1	284	34	26	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1761805--1761866	24	2.6	24	89	5	99	48	8	4	38	1.54
1761805--1761873	24	2.9	23	84	4	84	50	7	4	37	1.50
1763827--1763973	43	3.4	44	79	10	142	25	19	25	29	1.98
1783141--1783209	24	2.9	24	84	4	95	47	8	4	39	1.54
1788423--1788472	1	50.0	1	87	0	73	0	6	0	94	0.33
1792730--1792762	12	2.8	12	100	0	66	57	24	0	18	1.40
1801054--1801100	25	1.9	25	86	4	69	19	8	0	72	1.10
1809312--1809404	19	4.8	19	90	1	150	36	9	16	37	1.81
1809312--1809427	38	2.9	39	89	6	171	36	8	16	38	1.79
1809325--1809427	19	5.0	22	81	9	96	36	7	16	38	1.78
1809611--1809655	23	2.0	23	81	0	54	22	0	15	62	1.33
1809879--1809920	3	13.7	3	85	5	57	30	2	0	66	1.04
1811262--1811388	21	5.9	21	69	15	89	27	18	13	40	1.87
1811261--1811444	87	2.1	87	91	2	298	27	19	13	40	1.89
1811956--1812015	29	2.1	28	90	3	93	28	11	18	41	1.85
1815395--1815445	27	1.9	26	92	4	84	35	3	5	54	1.43
1817204--1817694	123	4.0	123	88	1	689	30	15	21	31	1.95
1821042--1821443	45	8.9	44	82	9	490	25	0	23	50	1.51
1821042--1821438	136	2.9	134	86	3	530	25	0	23	50	1.52
1821042--1821446	181	2.2	182	90	3	631	25	0	23	50	1.52
1821313--1821399	23	3.7	26	90	4	84	27	0	21	50	1.49
1821941--1821976	18	2.0	18	94	0	63	38	8	27	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1822627--1822651	7	3.6	7	100	0	50	60	12	0	28	1.32
1823753--1823795	11	3.8	12	81	6	54	58	0	0	41	0.98
1823803--1823853	11	4.6	11	92	0	84	49	7	23	19	1.74
1823794--1823889	33	2.9	33	79	4	86	47	4	28	19	1.68
1823859--1823898	11	3.6	11	93	6	64	45	0	35	20	1.51
1832323--1832353	12	2.5	13	89	10	55	45	0	0	54	0.99
1837191--1837236	24	2.1	20	84	15	56	54	2	28	15	1.53
1853663--1853780	41	2.9	42	87	2	150	26	16	24	33	1.96
1853668--1853793	41	3.1	41	83	4	121	25	15	25	34	1.95
1855377--1855479	53	1.9	54	88	2	154	35	13	14	35	1.86
1858894--1859068	53	3.3	50	73	12	163	28	22	18	30	1.97
1858865--1859068	79	2.6	79	82	3	250	28	22	18	30	1.97
1858865--1859057	26	7.3	26	74	12	108	28	22	18	30	1.98
1871709--1871763	23	2.4	23	81	6	67	56	3	5	34	1.40
1871756--1871838	23	3.6	23	81	1	85	60	1	8	30	1.34
1871811--1871850	17	2.4	17	95	0	71	60	7	5	27	1.45
1871756--1871868	23	5.1	22	73	16	74	60	4	7	28	1.43
1885760--1885818	31	1.9	31	86	6	84	49	11	18	20	1.79
1900739--1901109	44	8.6	43	73	12	210	27	21	23	26	1.99
1900555--1900809	132	1.9	132	82	4	307	30	20	23	25	1.99
1900776--1900986	84	2.4	86	80	9	234	28	19	23	27	1.99
1904568--1904601	17	2.0	17	100	0	68	29	5	5	58	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915230--1915790	44	12.8	45	71	13	280	26	22	20	29	1.99
1915166--1915573	218	1.9	210	92	5	683	27	22	20	28	1.99
1915377--1915746	172	2.1	172	94	2	643	27	22	21	28	1.99
1915466--1915696	128	1.8	128	82	5	297	26	21	22	29	1.99
1915460--1915788	89	3.8	88	75	11	336	26	23	21	28	1.99
1916550--1916609	28	2.3	28	80	11	74	60	11	11	16	1.60
1927998--1928038	21	2.0	21	85	0	55	56	4	7	31	1.48
1940826--1940861	17	2.1	17	100	0	72	52	19	11	16	1.73
1946166--1946203	17	2.2	17	90	0	58	2	21	0	76	0.91
1947745--1947779	12	2.9	12	82	0	52	45	0	34	20	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14