Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397256.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_56.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13963513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  29  of  29  ( 3437 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13318729--13318758
6
5.0
6
91
0
51
83
0
3
13
0.77
13319073--13319156
38
2.3
37
80
12
93
39
0
1
59
1.05
13319909--13319974
28
2.6
25
76
11
71
40
1
0
57
1.08
13343004--13343259
129
2.0
128
90
2
406
27
23
23
25
2.00
13351617--13351656
19
2.1
19
85
0
53
55
0
0
45
0.99
13362591--13362631
20
2.0
20
85
4
55
34
2
0
63
1.08
13383102--13383209
54
2.0
54
94
0
189
23
23
24
29
1.99
13401760--13401963
101
2.0
101
99
0
399
25
17
16
40
1.90
13416387--13416415
2
14.5
2
100
0
58
51
48
0
0
1.00
13420697--13420784
42
2.1
43
93
4
153
31
19
17
31
1.94
13437055--13437084
2
15.0
2
100
0
60
50
0
0
50
1.00
13448403--13448440
20
1.9
20
94
0
67
28
5
31
34
1.80
13449765--13449789
2
12.5
2
100
0
50
52
0
0
48
1.00
13475695--13475830
68
2.0
68
86
0
191
35
19
17
27
1.94
13495146--13495193
23
2.1
23
85
11
64
50
2
2
45
1.25
13500178--13500211
13
2.5
14
85
9
52
29
2
5
61
1.34
13506423--13506464
21
2.0
21
100
0
84
4
33
9
52
1.55
13508244--13508268
3
8.3
3
100
0
50
32
0
0
68
0.90
13509373--13509397
5
5.0
5
100
0
50
60
0
0
40
0.97
13513414--13513458
21
2.1
21
100
0
90
17
17
33
31
1.94
13515423--13515503
33
2.4
34
83
10
103
55
4
0
39
1.21
13515423--13515503
35
2.4
34
85
10
103
55
4
0
39
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13531488--13531524
4
10.0
4
88
11
53
75
0
24
0
0.80
13533167--13533216
25
2.0
26
84
11
68
54
4
0
42
1.19
13533208--13533246
17
2.2
18
86
4
53
53
5
0
41
1.23
13537833--13537870
19
2.1
19
90
5
60
31
0
0
68
0.90
13561362--13561411
16
3.1
16
72
16
50
44
4
6
46
1.47
13574088--13574143
2
28.0
2
88
0
85
44
0
0
55
0.99
13589122--13589147
2
13.0
2
100
0
52
50
0
0
50
1.00
13590255--13590457
100
2.0
99
88
0
298
38
13
10
37
1.79
13603560--13603586
14
1.9
14
100
0
54
48
7
7
37
1.59
13610641--13610721
30
2.6
31
73
9
76
46
0
2
50
1.14
13648521--13648555
2
17.5
2
90
0
52
42
0
2
54
1.15
13656043--13656238
81
2.4
81
83
6
245
40
4
9
46
1.55
13667264--13667296
16
2.0
17
88
5
50
39
0
3
57
1.14
13683120--13683161
6
7.3
6
81
10
52
0
40
0
59
0.97
13683115--13683158
16
2.8
16
85
0
52
0
40
0
59
0.98
13683115--13683161
22
2.1
22
92
0
76
0
40
0
59
0.97
13683190--13683218
7
4.1
7
100
0
58
0
27
0
72
0.85
13693045--13693085
21
2.0
21
85
9
57
41
2
4
51
1.36
13694517--13694581
25
2.6
25
79
20
73
44
3
1
50
1.26
13700240--13700271
16
1.9
17
93
6
57
0
15
0
84
0.63
13700252--13700311
30
2.0
31
90
3
95
6
13
10
70
1.34
13702651--13702700
16
2.9
17
81
18
68
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13720787--13720812
2
13.0
2
100
0
52
50
0
0
50
1.00
13758864--13758908
24
1.9
23
81
4
54
26
20
11
42
1.85
13763244--13764728
401
3.7
400
76
6
1558
29
17
23
30
1.97
13763175--13764793
807
2.0
809
93
0
2771
29
16
23
30
1.96
13767909--13767941
3
11.0
3
100
0
66
66
0
33
0
0.92
13769280--13769304
12
2.1
12
100
0
50
24
60
0
16
1.36
13775914--13775946
2
16.5
2
100
0
66
0
51
0
48
1.00
13795282--13795325
2
22.0
2
90
0
70
0
50
0
50
1.00
13795468--13795493
3
8.7
3
100
0
52
34
0
0
65
0.93
13798241--13798268
2
14.0
2
100
0
56
50
0
0
50
1.00
13801702--13801726
2
12.5
2
100
0
50
48
0
0
52
1.00
13828396--13828427
2
16.0
2
100
0
64
50
0
0
50
1.00
13831801--13831831
3
10.3
3
100
0
62
32
0
0
67
0.91
13832853--13832879
8
3.4
8
100
0
54
22
40
11
25
1.87
13845776--13845810
18
1.9
18
88
0
52
60
20
11
8
1.57
13855659--13855724
32
2.1
32
91
0
105
25
16
22
34
1.95
13858016--13858042
2
13.5
2
100
0
54
48
0
0
51
1.00
13860394--13860451
29
2.0
29
96
0
107
20
17
15
46
1.84
13879124--13879602
159
3.0
159
94
0
816
39
11
18
30
1.86
13881645--13881671
2
13.5
2
100
0
54
48
0
0
51
1.00
13886004--13886074
30
2.4
30
95
0
133
21
30
8
39
1.83
13892882--13892926
15
3.2
15
75
15
51
48
4
46
0
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13902847--13902879
7
4.9
7
88
3
50
12
24
0
63
1.28
13922338--13922396
27
2.2
27
87
0
82
33
16
30
18
1.94
13922356--13922434
26
3.0
26
79
7
79
31
18
31
17
1.95
13923356--13923400
19
2.4
19
84
0
63
17
20
17
44
1.87
13937748--13937860
39
2.9
39
82
0
136
26
32
10
30
1.90
13942901--13942948
20
2.4
20
79
6
53
27
2
18
52
1.57
13947900--13947949
26
1.9
26
87
0
73
26
26
10
38
1.87
13949366--13949405
7
5.7
7
100
0
80
30
0
42
27
1.56
13958879--13958911
14
2.4
14
94
0
57
3
9
51
36
1.49
13958885--13958918
14
2.4
14
90
0
50
2
5
50
41
1.42
13958897--13958959
29
2.2
28
85
2
81
11
4
42
41
1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29

The End!