genome.fa.s3.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397256.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_56.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13963513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  8  of  29  ( 3437 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2782984--2783121	45	3.0	46	76	9	115	39	31	10	18	1.86
2783072--2783126	22	2.4	23	93	3	94	38	38	7	16	1.76
2783089--2783167	22	3.6	22	76	6	79	39	31	7	21	1.81
2783223--2783274	23	2.3	23	86	0	68	30	34	11	23	1.90
2783414--2783457	22	2.0	22	86	0	61	40	15	9	34	1.79
2789045--2789118	10	7.3	10	83	3	85	1	13	2	82	0.84
2789899--2789941	22	1.9	23	86	13	63	65	9	9	16	1.47
2790326--2790391	33	2.1	30	81	13	80	24	7	1	66	1.26
2790337--2790399	33	1.9	33	93	0	108	30	6	0	63	1.19
2790491--2790522	15	2.1	15	94	0	55	31	0	0	68	0.90
2790460--2790526	32	2.1	32	83	13	84	29	1	0	68	0.98
2799148--2799227	39	2.1	38	92	2	133	31	13	22	32	1.93
2799548--2799574	2	13.5	2	100	0	54	51	0	0	48	1.00
2805987--2806025	17	2.3	17	90	0	60	58	5	10	25	1.51
2806044--2806077	17	2.0	17	88	0	50	58	17	5	17	1.57
2812520--2812569	23	2.3	23	82	6	68	54	14	10	22	1.69
2818027--2818075	2	24.5	2	95	0	89	48	2	0	48	1.12
2818419--2818588	86	2.0	83	93	3	286	33	18	16	31	1.93
2822038--2822118	40	2.0	40	92	0	135	19	29	12	38	1.89
2839257--2839385	44	2.8	46	82	10	158	42	13	9	34	1.76
2839257--2839415	48	3.4	46	78	10	164	40	13	9	37	1.77
2840765--2840804	20	2.2	18	86	13	55	30	0	2	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2840764--2840806	19	2.4	17	82	17	52	32	0	2	65	1.06
2845154--2845207	3	18.0	3	100	0	108	33	0	0	66	0.92
2850321--2850383	27	2.5	24	76	18	65	39	3	1	55	1.25
2851790--2851833	22	2.0	22	100	0	88	59	4	4	31	1.38
2853732--2853767	19	1.9	19	88	5	56	30	2	0	66	1.06
2862374--2862617	68	3.6	68	79	3	213	35	15	10	38	1.82
2871712--2871788	32	2.4	33	77	12	81	27	22	6	44	1.77
2872970--2873009	1	40.0	1	100	0	80	0	0	0	100	0.00
2889239--2889293	26	2.1	27	82	3	67	30	5	5	58	1.44
2890399--2890446	20	2.5	20	79	3	53	54	2	6	37	1.38
2891440--2891501	26	2.4	26	80	0	70	58	24	9	8	1.57
2891539--2891566	4	7.0	4	100	0	56	50	25	0	25	1.50
2893141--2893989	439	2.0	416	85	6	1119	39	11	6	42	1.66
2894065--2894134	30	2.3	29	81	11	79	55	0	0	44	0.99
2900164--2900196	16	2.1	16	94	0	57	9	24	0	66	1.20
2906596--2906626	2	15.5	2	100	0	62	51	0	0	48	1.00
2909638--2909686	21	2.5	20	80	12	57	26	6	4	63	1.36
2912530--2912571	19	2.3	19	79	4	50	69	9	7	14	1.37
2913540--2914007	254	1.8	257	86	5	689	42	7	12	37	1.70
2915275--2915318	23	1.9	23	81	9	54	38	27	0	34	1.57
2915354--2915422	33	2.1	33	83	0	84	17	33	10	39	1.83
2916665--2916885	93	2.4	92	90	3	336	27	33	23	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2916852--2916918	33	2.0	33	91	0	107	26	34	23	14	1.94
2917787--2917860	15	4.9	15	91	0	112	28	25	12	33	1.92
2925987--2926057	36	2.0	36	97	0	133	38	12	15	33	1.85
2926315--2926366	24	2.1	25	82	3	61	69	3	25	1	1.16
2934555--2934581	6	4.5	6	100	0	54	14	18	33	33	1.92
2940224--2940257	2	17.5	2	93	6	61	50	0	0	50	1.00
2940225--2940254	15	2.0	15	100	0	60	53	0	0	46	1.00
2940224--2940256	17	1.9	17	100	0	66	51	0	0	48	1.00
2941688--2941732	18	2.5	18	88	0	63	35	40	4	20	1.72
2943088--2943134	2	23.5	2	85	8	60	46	2	4	46	1.34
2944258--2944585	120	2.8	118	84	6	405	23	9	17	49	1.75
2947373--2947439	35	1.9	35	100	0	134	17	8	19	53	1.70
2960959--2961084	34	3.7	35	76	5	114	40	24	11	23	1.88
2966119--2966167	20	2.4	20	83	10	55	22	22	8	46	1.77
2984186--2984215	14	2.2	14	94	5	53	83	0	13	3	0.77
2984539--2984563	6	4.2	6	100	0	50	0	0	52	48	1.00
2985311--2985377	30	2.2	30	91	0	116	43	0	0	56	0.99
2985501--2985535	18	1.9	18	88	11	54	45	5	14	34	1.68
2986369--2986444	28	2.6	28	87	6	98	48	3	0	47	1.20
2986628--2986660	16	2.1	16	88	11	50	54	0	0	45	0.99
2987693--2987720	5	5.6	5	100	0	56	17	0	0	82	0.68
2988133--2988188	29	1.9	29	85	0	76	35	1	0	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2993785--2993918	66	2.0	66	89	0	205	30	9	16	43	1.80
2994017--2994069	27	2.0	27	92	0	88	35	13	16	33	1.88
2994043--2994169	32	4.0	32	86	0	155	36	25	12	25	1.91
2996853--2996928	30	2.5	31	71	4	82	35	13	6	44	1.69
3001905--3001967	33	1.9	33	83	0	81	39	4	12	42	1.64
3003212--3003258	15	3.0	16	81	6	60	29	2	10	57	1.44
3006131--3006185	24	2.3	24	100	0	110	23	16	7	52	1.68
3008822--3008911	16	5.6	16	73	7	76	46	16	4	32	1.67
3008823--3008911	10	8.9	10	71	9	65	47	16	4	31	1.67
3008812--3008905	30	3.1	30	89	3	143	46	14	5	32	1.67
3011069--3011101	18	1.9	17	88	11	50	57	6	3	33	1.38
3011075--3011108	18	1.9	18	88	5	52	58	8	2	29	1.43
3011075--3011120	18	2.5	19	82	10	51	63	10	2	23	1.38
3031518--3031754	119	2.0	119	99	0	465	36	24	9	29	1.87
3032843--3033335	246	2.0	245	94	0	860	33	16	13	35	1.89
3034376--3034433	25	2.3	25	85	5	73	44	8	12	34	1.72
3036242--3036289	19	2.5	19	93	0	87	22	16	25	35	1.95
3039059--3039122	25	2.6	25	87	5	85	43	7	15	32	1.76
3040223--3040298	40	1.9	40	86	0	107	21	25	21	32	1.97
3055540--3055578	19	2.0	20	90	5	62	38	5	7	48	1.54
3056835--3056877	17	2.6	16	78	10	50	74	4	4	16	1.16
3057056--3057106	22	2.3	22	96	0	93	7	23	3	64	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3061797--3061835	20	1.9	20	84	5	51	35	7	10	46	1.67
3065544--3065745	35	5.8	35	84	0	224	50	19	8	20	1.74
3066031--3066072	14	3.0	14	82	6	50	16	21	4	57	1.58
3066342--3066376	18	1.9	18	88	0	52	17	31	0	51	1.45
3075955--3076025	26	2.9	26	71	21	64	49	0	0	50	1.00
3077148--3077188	21	2.0	21	90	4	66	75	0	2	21	0.92
3077942--3077974	5	6.6	5	92	0	57	0	57	0	42	0.98
3087666--3087695	14	2.2	14	94	5	53	33	3	0	63	1.11
3088698--3088801	51	2.0	51	98	0	199	43	12	18	25	1.85
3103872--3103905	18	1.9	17	88	5	50	23	29	0	47	1.52
3105417--3105473	21	2.6	22	76	13	64	50	17	17	14	1.77
3105969--3106078	30	3.7	30	87	2	159	31	11	24	31	1.91
3106030--3106097	29	2.3	30	84	2	84	32	13	20	33	1.91
3105981--3106095	59	1.9	59	85	3	160	33	13	22	31	1.92
3106089--3106153	28	2.3	28	86	0	85	27	13	23	35	1.93
3113716--3113769	24	2.2	24	81	15	58	18	12	1	66	1.33
3115970--3116004	12	2.9	12	100	0	70	65	8	0	25	1.21
3120463--3120579	60	2.0	60	91	3	191	28	5	13	52	1.64
3121036--3121099	25	2.3	29	76	17	82	39	17	9	34	1.82
3121056--3121116	29	2.3	25	83	11	68	40	11	14	32	1.82
3121694--3121731	20	1.9	20	88	0	58	44	0	10	44	1.38
3124978--3125015	15	2.6	15	83	4	51	21	2	18	57	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3139202--3139228	2	13.5	2	100	0	54	48	0	0	51	1.00
3146361--3146410	18	2.8	18	87	6	66	36	4	60	0	1.16
3146359--3146394	6	6.0	6	100	0	72	33	0	66	0	0.92
3150016--3150041	12	2.2	12	100	0	52	34	23	0	42	1.54
3156940--3157442	252	2.0	252	82	3	618	47	17	10	24	1.79
3157800--3157839	21	2.0	21	85	5	55	47	5	10	37	1.59
3157949--3158000	19	2.5	22	73	26	58	50	3	1	44	1.31
3160412--3160450	14	2.7	14	81	18	53	5	10	7	76	1.13
3164771--3164809	12	2.9	14	81	14	55	43	0	0	56	0.99
3164768--3164810	14	3.2	14	80	12	63	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29